Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3138_(pflA)_3504192_3505280
DateThu Aug 8 16:20:32 BST 2019
Unique Job ID661ac8c92fd5f8b5
SequenceMSDPFTIATK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.533 Y:47.370 Z:44.687
Model (left) based on template c3c8fA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme;
PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with partially2 disordered adomet
Confidence and coverage
Confidence:100.0% Coverage: 58%
210 residues ( 58% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
315 residues ( 87%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c8fA_
100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme;
PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with partially2 disordered adomet
2c6fz6B_
99.9 17
PDB header:transferase
Chain: B: PDB Molecule:probable dual-specificity rna methyltransferase rlmn;
PDBTitle: crystal structure of a radical sam methyltransferase from2 sphaerobacter thermophilus
3c3rfaB_
99.9 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribosomal rna large subunit methyltransferase n;
PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine
4c3canA_
99.9 18
PDB header:lyase activator
Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme;
PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482
5c3rfaA_
99.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n;
PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine
6c2yx0A_
99.9 17
PDB header:metal binding protein
Chain: A: PDB Molecule:radical sam enzyme;
PDBTitle: crystal structure of p. horikoshii tyw1
7d1tv8a_
99.9 19
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:MoCo biosynthesis proteins
8c5v1tA_
99.9 17
PDB header:metal binding protein
Chain: A: PDB Molecule:radical sam;
PDBTitle: crystal structure of streptococcus suis suib bound to precursor2 peptide suia
9c6efnA_
99.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:sporulation killing factor maturation protein skfb;
PDBTitle: structure of a ripp maturase, skfb
10c4njkA_
99.9 21
PDB header:lyase
Chain: A: PDB Molecule:7-carboxy-7-deazaguanine synthase;
PDBTitle: crystal structure of quee from burkholderia multivorans in complex2 with adomet, 7-carboxy-7-deazaguanine, and mg2+
11c5th5C_
99.8 13
PDB header:lyase
Chain: C: PDB Molecule:7-carboxy-7-deazaguanine synthase;
PDBTitle: crystal structure of quee from bacillus subtilis with 6-carboxypterin-2 5'-deoxyadenosyl ester bound
12c6b4cH_
99.8 13
PDB header:antiviral protein
Chain: H: PDB Molecule:viperin;
PDBTitle: structure of viperin from trichoderma virens
13c4u0pB_
99.8 16
PDB header:transferase
Chain: B: PDB Molecule:lipoyl synthase 2;
PDBTitle: the crystal structure of lipoyl synthase in complex with s-adenosyl2 homocysteine
14c6nhlB_
99.8 15
PDB header:lyase
Chain: B: PDB Molecule:7-carboxy-7-deazaguanine synthase;
PDBTitle: crystal structure of quee from escherichia coli
15c4k39A_
99.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic sulfatase-maturating enzyme;
PDBTitle: native ansmecpe with bound adomet and cp18cys peptide
16c5vslB_
99.8 14
PDB header:antiviral protein
Chain: B: PDB Molecule:radical s-adenosyl methionine domain-containing protein 2;
PDBTitle: crystal structure of viperin with bound [4fe-4s] cluster and s-2 adenosylhomocysteine (sah)
17c5wggA_
99.8 12
PDB header:peptide binding protein
Chain: A: PDB Molecule:radical sam domain protein;
PDBTitle: structural insights into thioether bond formation in the biosynthesis2 of sactipeptides
18c4wcxC_
99.7 17
PDB header:lyase
Chain: C: PDB Molecule:biotin and thiamin synthesis associated;
PDBTitle: crystal structure of hydg: a maturase of the [fefe]-hydrogenase
19c5exkG_
99.7 16
PDB header:transferase
Chain: G: PDB Molecule:lipoyl synthase;
PDBTitle: crystal structure of m. tuberculosis lipoyl synthase with 6-2 thiooctanoyl peptide intermediate
20c2z2uA_
99.7 21
PDB header:metal binding protein
Chain: A: PDB Molecule:upf0026 protein mj0257;
PDBTitle: crystal structure of archaeal tyw1
21c2a5hC_
not modelled 99.6 13
PDB header:isomerase
Chain: C: PDB Molecule:l-lysine 2,3-aminomutase;
PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate).
22d1r30a_
not modelled 99.6 17
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Biotin synthase
23c1r30A_
not modelled 99.6 17
PDB header:transferase
Chain: A: PDB Molecule:biotin synthase;
PDBTitle: the crystal structure of biotin synthase, an s-adenosylmethionine-2 dependent radical enzyme
24c3t7vA_
not modelled 99.6 13
PDB header:transferase
Chain: A: PDB Molecule:methylornithine synthase pylb;
PDBTitle: crystal structure of methylornithine synthase (pylb)
25c3cixA_
not modelled 99.6 13
PDB header:adomet binding protein
Chain: A: PDB Molecule:fefe-hydrogenase maturase;
PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate
26c6c8vA_
not modelled 99.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme pqq synthesis protein e;
PDBTitle: x-ray structure of pqqe from methylobacterium extorquens
27c4jc0B_
not modelled 99.5 13
PDB header:transferase
Chain: B: PDB Molecule:ribosomal protein s12 methylthiotransferase rimo;
PDBTitle: crystal structure of thermotoga maritima holo rimo in complex with2 pentasulfide, northeast structural genomics consortium target vr77
28c6fd2B_
not modelled 99.4 18
PDB header:biosynthetic protein
Chain: B: PDB Molecule:putative apramycin biosynthetic oxidoreductase 4;
PDBTitle: radical sam 1,2-diol dehydratase aprd4 in complex with its substrate2 paromamine
29c4rtbA_
not modelled 99.3 12
PDB header:lyase
Chain: A: PDB Molecule:hydg protein;
PDBTitle: x-ray structure of the fefe-hydrogenase maturase hydg from2 carboxydothermus hydrogenoformans
30d1olta_
not modelled 99.3 11
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Oxygen-independent coproporphyrinogen III oxidase HemN
31c4m7tA_
not modelled 99.2 14
PDB header:metal binding protein
Chain: A: PDB Molecule:btrn;
PDBTitle: crystal structure of btrn in complex with adomet and 2-doia
32c5l7jA_
not modelled 99.2 15
PDB header:translation
Chain: A: PDB Molecule:elp3 family;
PDBTitle: crystal structure of elp3 from dehalococcoides mccartyi
33c5ul4A_
not modelled 99.0 11
PDB header:metal binding protein
Chain: A: PDB Molecule:oxsb protein;
PDBTitle: structure of cobalamin-dependent s-adenosylmethionine radical enzyme2 oxsb with aqua-cobalamin and s-adenosylmethionine bound
34c4r33A_
not modelled 98.8 15
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
35c6qk7C_
not modelled 98.8 15
PDB header:translation
Chain: C: PDB Molecule:elongator complex protein 3;
PDBTitle: elongator catalytic subcomplex elp123 lobe
36c2qgqF_
not modelled 98.7 14
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:protein tm_1862;
PDBTitle: crystal structure of tm_1862 from thermotoga maritima. northeast2 structural genomics consortium target vr77
37c4fheA_
not modelled 98.7 11
PDB header:lyase
Chain: A: PDB Molecule:spore photoproduct lyase;
PDBTitle: spore photoproduct lyase c140a mutant
38c6iazA_
not modelled 98.1 12
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase, elp3 family;
PDBTitle: the archaeal methanocaldococcus infernus elp3 with n-terminus deletion2 (1-46)
39c3e49A_
not modelled 95.9 17
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold;
PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution
40c3no5C_
not modelled 95.6 14
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution
41c2y0fD_
not modelled 95.1 27
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
42c3c6cA_
not modelled 94.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution
43c3noyA_
not modelled 94.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
44c2y7eA_
not modelled 94.0 14
PDB header:lyase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form)
45c3e02A_
not modelled 94.0 15
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849;
PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution
46c3chvA_
not modelled 93.7 11
PDB header:metal binding protein
Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim
PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution
47c5zmyF_
not modelled 92.9 15
PDB header:hydrolase
Chain: F: PDB Molecule:cis-epoxysuccinate hydrolase;
PDBTitle: crystal structure of a cis-epoxysuccinate hydrolase producing d(-)-2 tartaric acids
48d1x7fa2
not modelled 92.8 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Outer surface protein, N-terminal domain
49c1x7fA_
not modelled 92.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:outer surface protein;
PDBTitle: crystal structure of an uncharacterized b. cereus protein
50c4u3eA_
not modelled 88.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
51c5fkvA_
not modelled 87.7 18
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
52c2gb5B_
not modelled 86.2 16
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
53c6o3pA_
not modelled 86.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
54c6hmsB_
not modelled 85.5 30
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
55c5vrvA_
not modelled 83.4 18
PDB header:hydrolase,oxidoreductase
Chain: A: PDB Molecule:protein regulated by acid ph;
PDBTitle: 2.05 angstrom resolution crystal structure of c-terminal domain2 (duf2156) of putative lysylphosphatidylglycerol synthetase from3 agrobacterium fabrum.
56c3qc3B_
not modelled 82.6 14
PDB header:isomerase
Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase;
PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution
57c5flmI_
not modelled 82.6 23
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
58c1i3qI_
not modelled 82.3 20
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
59c3hkzP_
not modelled 81.7 29
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
60c3cc4Z_
not modelled 81.4 28
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
61c3lotC_
not modelled 80.2 16
PDB header:structure genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution
62c3zf7o_
not modelled 80.2 24
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
63c4a17Y_
not modelled 79.9 24
PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
64c2hnhA_
not modelled 78.7 17
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii alpha subunit;
PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii
65c2qa4Z_
not modelled 78.0 28
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
66c3floD_
not modelled 77.5 23
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit
67c4gx9A_
not modelled 77.4 17
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit epsilon,dna polymerase iii
PDBTitle: crystal structure of a dna polymerase iii alpha-epsilon chimera
68d1ffkw_
not modelled 76.8 34
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
69c4v36B_
not modelled 76.6 19
PDB header:transferase
Chain: B: PDB Molecule:lysyl-trna-dependent l-ysyl-phosphatidylgycerol synthase;
PDBTitle: the structure of l-pgs from bacillus licheniformis
70d1muwa_
not modelled 76.5 14
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
71c6k0aC_
not modelled 76.3 15
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ribonuclease p protein component 3;
PDBTitle: cryo-em structure of an archaeal ribonuclease p
72c3ct7E_
not modelled 76.3 14
PDB header:isomerase
Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase;
PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12
73c4b6ap_
not modelled 75.8 21
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
74c1yshD_
not modelled 75.6 24
PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
75c3j39p_
not modelled 75.4 21
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
76c2zkrz_
not modelled 75.3 24
PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
77d1hjsa_
not modelled 75.2 9
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
78d1jj2y_
not modelled 75.0 31
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
79d1vqoz1
not modelled 74.7 28
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
80c3h0gI_
not modelled 74.2 24
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
81c3j21i_
not modelled 73.9 34
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
82c2qkdA_
not modelled 73.7 15
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
83d7reqa2
not modelled 73.4 13
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
84c3izrm_
not modelled 72.9 24
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
85c3jyw9_
not modelled 72.6 21
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
86c3dx5A_
not modelled 72.3 10
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
87c5zb8B_
not modelled 71.5 14
PDB header:dna binding protein
Chain: B: PDB Molecule:pfuendoq;
PDBTitle: crystal structure of the novel lesion-specific endonuclease pfuendoq2 from pyrococcus furiosus
88c5y06A_
not modelled 71.3 25
PDB header:unknown function
Chain: A: PDB Molecule:msmeg_4306;
PDBTitle: structural characterization of msmeg_4306 from mycobacterium smegmatis
89c3axtA_
not modelled 70.5 17
PDB header:transferase
Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase
PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine
90c6ncsB_
not modelled 70.3 11
PDB header:biosynthetic protein
Chain: B: PDB Molecule:n-acetylneuraminic acid (sialic acid) synthetase;
PDBTitle: crystal structure of n-acetylneuraminic acid (sialic acid) synthetase2 from leptospira borgpetersenii serovar hardjo-bovis in complex with3 citrate
91c4k3zA_
not modelled 69.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-erythrulose 4-phosphate dehydrogenase;
PDBTitle: crystal structure of d-erythrulose 4-phosphate dehydrogenase from2 brucella melitensis, solved by iodide sad
92c2nb9A_
not modelled 69.9 32
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger
93c5ijlA_
not modelled 69.0 27
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
94c4c2mX_
not modelled 69.0 20
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
95d1xima_
not modelled 68.9 14
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
96d1bxca_
not modelled 68.6 14
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
97c4l9mA_
not modelled 68.3 22
PDB header:signaling protein
Chain: A: PDB Molecule:ras guanyl-releasing protein 1;
PDBTitle: autoinhibited state of the ras-specific exchange factor rasgrp1
98c4yddF_
not modelled 68.2 3
PDB header:oxidoreductase
Chain: F: PDB Molecule:dmso reductase family type ii enzyme, iron-sulfur subunit;
PDBTitle: crystal structure of the perchlorate reductase pcrab from azospira2 suillum ps
99c1s1i9_
not modelled 67.8 21
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
100c3rmjB_
not modelled 67.6 10
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of truncated alpha-isopropylmalate synthase from2 neisseria meningitidis
101d1qt1a_
not modelled 67.3 17
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
102c4ur7B_
not modelled 67.2 6
PDB header:lyase
Chain: B: PDB Molecule:keto-deoxy-d-galactarate dehydratase;
PDBTitle: crystal structure of keto-deoxy-d-galactarate dehydratase2 complexed with pyruvate
103c3j21e_
not modelled 67.0 35
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
104d1yx1a1
not modelled 66.6 11
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:KguE-like
105c3ogrA_
not modelled 66.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose
106c3e35A_
not modelled 66.4 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein sco1997;
PDBTitle: actinobacteria-specific protein of unknown function, sco1997
107c5zhzA_
not modelled 66.2 15
PDB header:dna binding protein
Chain: A: PDB Molecule:probable endonuclease 4;
PDBTitle: crystal structure of the apurinic/apyrimidinic endonuclease iv from2 mycobacterium tuberculosis
108c3bicA_
not modelled 65.2 12
PDB header:isomerase
Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor;
PDBTitle: crystal structure of human methylmalonyl-coa mutase
109d1bxba_
not modelled 64.1 15
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
110c1dvbA_
not modelled 63.8 35
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
111c2lcqA_
not modelled 63.4 28
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
112c1hk8A_
not modelled 63.4 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
113d1hk8a_
not modelled 63.4 15
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
114c4rulA_
not modelled 63.3 29
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of full-length e.coli topoisomerase i in complex2 with ssdna
115d1ujpa_
not modelled 63.1 15
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
116d2apob1
not modelled 63.1 28
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
117c2p0oA_
not modelled 63.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf871;
PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function
118d2q02a1
not modelled 63.0 12
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
119c1yuzB_
not modelled 62.7 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
120c2zaeB_
not modelled 61.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease p protein component 4;
PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3

Binding site prediction 

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