Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3142c_(-)_3509115_3509543
DateThu Aug 8 16:20:32 BST 2019
Unique Job ID14866f033ce75869
SequenceMTEQEMTEQW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.038 Y:20.095 Z:29.538
Model (left) based on template c3luuA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution
Confidence and coverage
Confidence: 65.9% Coverage: 15%
22 residues ( 15% of your sequence) have been modelled with 65.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3luuA_



65.9 32
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution
2c2l6pA_



65.4 29
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
3c2l6nA_



60.4 29
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1;
PDBTitle: nmr solution structure of the protein yp_001092504.1
4d2auwa2



57.5 23
Fold:NE0471 N-terminal domain-like
Superfamily:NE0471 N-terminal domain-like
Family:NE0471 N-terminal domain-like
5c3pbpD_



42.9 17
PDB header:transport protein,structural protein
Chain: D: PDB Molecule:nucleoporin nup82;
PDBTitle: structure of the yeast heterotrimeric nup82-nup159-nup116 nucleoporin2 complex
6c2auwB_



42.1 23
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
7c5lhxA_



41.9 26
PDB header:structural protein
Chain: A: PDB Molecule:serine/threonine-protein kinase plk4;
PDBTitle: pb3 domain of drosophila melanogaster plk4 (sak)
8d1lp9e1



41.0 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
9d1bd2d1



38.6 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
10d1j8hd1



36.4 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
11d3pmga4



35.7 43
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
12d2cdea1



34.6 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
13d1kfia4



32.5 29
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
14c4g6tA_



30.2 16
PDB header:chaperone
Chain: A: PDB Molecule:type iii chaperone protein shca;
PDBTitle: structure of the hopa1-scha chaperone-effector complex
15c3k8rA_



30.1 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution
16d1kgcd1



29.0 30
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
17c5xcxB_



28.3 28
PDB header:immune system
Chain: B: PDB Molecule:vl-sarah(s37c) chimera;
PDBTitle: crystal structure of ts2/16 fv-clasp fragment
18c5ix9A_



27.2 21
PDB header:antifreeze protein, cell adhesion
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: cell surface anchoring domain
19c2ldmA_



27.2 33
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
20d2esvd1



26.1 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
21d1h5ba_



not modelled 24.0 30
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
22d2qqsa2



not modelled 22.9 47
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
23d1qrnd1



not modelled 22.7 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
24d2ak4d1



not modelled 21.3 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
25c2ol3A_



not modelled 21.2 27
PDB header:immune system
Chain: A: PDB Molecule:bm3.3 t-cell receptor alpha-chain;
PDBTitle: crystal structure of bm3.3 scfv tcr in complex with pbm8-h-2kbm8 mhc2 class i molecule
26c4kq7B_



not modelled 19.9 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf2961 family protein (bacuni_00161) from2 bacteroides uniformis atcc 8492 at 1.62 a resolution
27c3p8dB_



not modelled 19.0 33
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
28d1jyoa_



not modelled 18.5 20
Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
29c5xcqB_



not modelled 17.4 21
PDB header:immune system
Chain: B: PDB Molecule:vl-sarah(m24c) chimera;
PDBTitle: crystal structure of p20.1 fv-clasp fragment with its antigen peptide
30d1mbya_



not modelled 17.0 26
Fold:Polo-box domain
Superfamily:Polo-box domain
Family:Swapped Polo-box domain
31d1i9ea_



not modelled 16.8 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
32c2equA_



not modelled 16.6 22
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
33d1u3hb1



not modelled 16.5 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
34d1w7ja1



not modelled 15.5 27
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
35c4m8aA_



not modelled 15.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: crystal structure of thermotoga maritima ftsh periplasmic domain
36d2qqra2



not modelled 15.4 47
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
37c5zu4B_



not modelled 15.1 20
PDB header:antitumor protein
Chain: B: PDB Molecule:natterin-like protein;
PDBTitle: crystal structure of lamprey immune protein
38c5fu5A_



not modelled 15.0 25
PDB header:sugar binding protein
Chain: A: PDB Molecule:cbm77-rfpl;
PDBTitle: the complexity of the ruminococcus flavefaciens cellulosome2 reflects an expansion in glycan recognition
39d2fug31



not modelled 14.6 8
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
40c4by2C_



not modelled 14.4 12
PDB header:structural protein
Chain: C: PDB Molecule:anastral spindle 2, sas 4;
PDBTitle: sas-4 (dcpap) tcp domain in complex with a proline rich motif of ana22 (dstil) of drosophila melanogaster
41d1fo0a_



not modelled 14.2 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
42c2x8nA_



not modelled 14.1 19
PDB header:structural genomics
Chain: A: PDB Molecule:cv0863;
PDBTitle: solution nmr structure of uncharacterized protein cv0863 from2 chromobacterium violaceum. northeast structural genomics target3 (nesg) target cvt3. ocsp target cv0863.
43c4uc4A_



not modelled 14.0 14
PDB header:replication
Chain: A: PDB Molecule:lysine-specific demethylase 4b;
PDBTitle: crystal structure of hybrid tudor domain of human lysine demethylase2 kdm4b
44d1prtb1



not modelled 13.8 20
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
45c6hhkB_



not modelled 13.7 21
PDB header:viral protein
Chain: B: PDB Molecule:gp105;
PDBTitle: structure of gp105 of listeria bacteriophage a511
46d2bnqd1



not modelled 13.4 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
47c4chjA_



not modelled 12.8 36
PDB header:cell cycle
Chain: A: PDB Molecule:imc sub-compartment protein isp3;
PDBTitle: structure of inner membrane complex (imc) sub-compartment2 protein 3 (isp3) from toxoplasma gondii
48d1b88a_



not modelled 12.3 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
49c3tgoD_



not modelled 12.3 14
PDB header:membrane protein
Chain: D: PDB Molecule:lipoprotein 34;
PDBTitle: crystal structure of the e. coli bamcd complex
50d1aoga2



not modelled 12.0 13
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
51d1tvda_



not modelled 11.8 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
52c3mb2J_



not modelled 11.8 29
PDB header:isomerase
Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
53c4gvbB_



not modelled 11.7 17
PDB header:toxin
Chain: B: PDB Molecule:kp6 killer toxin subunit beta;
PDBTitle: crystal structure of the virally encoded antifungal protein, kp6,2 heterodimer
54c3qiiA_



not modelled 11.3 33
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
55d1ac6a_



not modelled 10.9 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
56d1kj2a_



not modelled 10.8 38
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
57c3aqjQ_



not modelled 10.4 40
PDB header:metal binding protein
Chain: Q: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of a c-terminal domain of the bacteriophage p2 tail2 spike protein, gpv
58d1td4a_



not modelled 10.3 26
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
59c6dslB_



not modelled 10.2 28
PDB header:splicing
Chain: B: PDB Molecule:consensus engineered intein catc;
PDBTitle: consensus engineered intein (cat) with atypical split site
60c4furD_



not modelled 10.0 29
PDB header:hydrolase
Chain: D: PDB Molecule:urease subunit gamma 2;
PDBTitle: crystal structure of urease subunit gamma 2 from brucella melitensis2 biovar abortus 2308
61c1yc7B_



not modelled 9.7 14
PDB header:immune system
Chain: B: PDB Molecule:anti-vsg immunoglobulin heavy chain variable
PDBTitle: caban33 vhh fragment against vsg
62c5edfA_



not modelled 9.6 11
PDB header:unknown function
Chain: A: PDB Molecule:frpc operon protein;
PDBTitle: crystal structure of the selenomethionine-substituted iron-regulated2 protein frpd from neisseria meningitidis
63d1c5ea_



not modelled 9.4 32
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
64d2co3a1



not modelled 9.3 47
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
65d1u3ha1



not modelled 9.3 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
66d2cnza1



not modelled 8.9 47
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
67c4z42A_



not modelled 8.7 29
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit gamma;
PDBTitle: crystal structure of urease from yersinia enterocolitica
68d4ubpa_



not modelled 8.7 21
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
69c2fvhB_



not modelled 8.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:urease gamma subunit;
PDBTitle: crystal structure of rv1848, a urease gamma subunit urea (urea2 amidohydrolase), from mycobacterium tuberculosis
70d3elga1



not modelled 8.6 9
Fold:BLIP-like
Superfamily:BT0923-like
Family:BT0923-like
71c3metB_



not modelled 8.5 26
PDB header:transcription
Chain: B: PDB Molecule:saga-associated factor 29 homolog;
PDBTitle: crystal structure of sgf29 in complex with h3k4me2
72c3htyC_



not modelled 8.3 22
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein bt_0869;
PDBTitle: crystal structure of a lipocalin-like protein (bt_0869) from2 bacteroides thetaiotaomicron vpi-5482 at 1.95 a resolution
73c2wv9A_



not modelled 8.3 27
PDB header:hydrolase
Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin
PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus
74d1e9ya2



not modelled 8.2 21
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
75c5c2mA_



not modelled 8.1 24
PDB header:structural protein
Chain: A: PDB Molecule:predicted protein;
PDBTitle: the de novo evolutionary emergence of a symmetrical protein is shaped2 by folding constraints
76c4chmB_



not modelled 7.7 14
PDB header:cell cycle
Chain: B: PDB Molecule:imc sub-compartment protein isp1;
PDBTitle: structure of inner membrane complex (imc) sub-compartment protein 12 (isp1) from toxoplasma gondii
77c5t49A_



not modelled 7.6 30
PDB header:hydrolase
Chain: A: PDB Molecule:bh0236 protein;
PDBTitle: crystal structure of semet derivative bhgh81
78d1olma2



not modelled 7.6 15
Fold:Supernatant protein factor (SPF), C-terminal domain
Superfamily:Supernatant protein factor (SPF), C-terminal domain
Family:Supernatant protein factor (SPF), C-terminal domain
79d1mkia_



not modelled 7.6 25
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:Glutaminase
80d1ncbh1



not modelled 7.3 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
81d3bmva3



not modelled 7.2 31
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
82c2qqsB_



not modelled 7.2 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
83c3j20N_



not modelled 7.1 16
PDB header:ribosome
Chain: N: PDB Molecule:30s ribosomal protein s12p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
84d1k3xa2



not modelled 7.0 20
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
85c4rgiA_



not modelled 6.9 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ktsc domain protein ypo2434 from yersinia pestis
86d1ejxa_



not modelled 6.8 21
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
87d1ucbh1



not modelled 6.8 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
88c3jbhA_



not modelled 6.8 10
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain striated muscle;
PDBTitle: two heavy meromyosin interacting-heads motifs flexible docked into2 tarantula thick filament 3d-map allows in depth study of intra- and3 intermolecular interactions
89c5xcvE_



not modelled 6.8 22
PDB header:immune system
Chain: E: PDB Molecule:vl-sarah(s37c) chimera,vl-sarah(s37c) chimera;
PDBTitle: crystal structure of nz-1 fv-clasp fragment with its antigen peptide
90d1igmh_



not modelled 6.8 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
91c3tu3A_



not modelled 6.6 26
PDB header:toxin/toxin chaperone
Chain: A: PDB Molecule:exou chaperone;
PDBTitle: 1.92 angstrom resolution crystal structure of the full-length spcu in2 complex with full-length exou from the type iii secretion system of3 pseudomonas aeruginosa
92c3ay2A_



not modelled 6.6 10
PDB header:antitumor protein, antiviral protein
Chain: A: PDB Molecule:lipid modified azurin protein;
PDBTitle: crystal structure of neisserial azurin
93c6dbdC_



not modelled 6.6 21
PDB header:immune system
Chain: C: PDB Molecule:nanobody vhh r326;
PDBTitle: crystal structure of vhh r326
94c2n5uA_



not modelled 6.6 17
PDB header:photosynthesis
Chain: A: PDB Molecule:tsr0524 protein;
PDBTitle: solution structure of the cyanobacterial cytochrome b6f complex2 subunit petp
95d1q1jl1



not modelled 6.6 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
96c4i86A_



not modelled 6.5 12
PDB header:transferase
Chain: A: PDB Molecule:cellulose synthase 1;
PDBTitle: crystal structure of pilz domain of cesa from cellulose synthesizing2 bacterium
97d1wtla_



not modelled 6.5 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
98d1xaua_



not modelled 6.3 42
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
99d1f8th1



not modelled 6.2 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite