Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3145_(nuoA)_3511679_3512065
DateThu Aug 8 16:20:33 BST 2019
Unique Job IDcb1a330c782ee393
SequenceLNVYIPILVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.074 Y:73.553 Z:44.440
Model (left) based on template c6humC_
Top template information
PDB header:proton transport
Chain: C: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 3;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
Confidence and coverage
Confidence:100.0% Coverage: 87%
111 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6humC_



100.0 37
PDB header:proton transport
Chain: C: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 3;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
2c5lc5A_



100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: structure of mammalian respiratory complex i, class2
3c6gcs3_



100.0 20
PDB header:oxidoreductase
Chain: 3: PDB Molecule:nd3 subunit (nu3m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
4c3rkoE_



100.0 31
PDB header:oxidoreductase
Chain: E: PDB Molecule:nadh-quinone oxidoreductase subunit a;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
5c3rkoA_



100.0 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-quinone oxidoreductase subunit a;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
6c4he8B_



100.0 41
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh-quinone oxidoreductase subunit 7;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
7c6g72A_



99.9 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: mouse mitochondrial complex i in the deactive state
8c2ml7A_



35.2 43
PDB header:unknown function
Chain: A: PDB Molecule:specific abundant protein 3;
PDBTitle: ginsentides: characterization, structure and application of a new2 class of highly stable cystine knot peptides in ginseng
9d1jwya1



26.6 31
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
10d3bz7a1



24.9 31
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
11c3fy6A_



21.3 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of v. cholerae. integron cassette2 protein vch_cass3
12d2csha2



18.2 60
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
13d1k32a1



15.3 29
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:Tail specific protease PDZ domain
14d2adra2



14.8 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
15c2elsA_



9.3 27
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 2nd c2h2 zinc finger of human2 zinc finger protein 406
16c4oudA_



8.8 31
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: engineered tyrosyl-trna synthetase with the nonstandard amino acid l-2 4,4-biphenylalanine
17c2k9pA_



8.6 15
PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
18c6cfwI_



8.6 15
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
19c1zrtD_



8.2 11
PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
20c2ytaA_



8.0 33
PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger protein 32;
PDBTitle: solution structure of c2h2 type zinc finger domain 3 in2 zinc finger protein 32
21d2j7ja2



not modelled 7.6 67
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
22c4oudB_



not modelled 7.5 38
PDB header:ligase
Chain: B: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: engineered tyrosyl-trna synthetase with the nonstandard amino acid l-2 4,4-biphenylalanine
23c5oliA_



not modelled 7.1 6
PDB header:protein binding
Chain: A: PDB Molecule:putative transferase caf17, mitochondrial;
PDBTitle: crystal structure of human iba57
24c2dmdA_



not modelled 6.6 8
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 64, isoforms 1 and 2;
PDBTitle: solution structure of the n-terminal c2h2 type zinc-binding2 domain of the zinc finger protein 64, isoforms 1 and 2
25c2fynH_



not modelled 6.6 16
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c1;
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
26c3ssbC_



not modelled 6.2 100
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:inducible metalloproteinase inhibitor protein;
PDBTitle: structure of insect metalloproteinase inhibitor in complex with2 thermolysin
27c2wsc1_



not modelled 5.9 15
PDB header:photosynthesis
Chain: 1: PDB Molecule:at3g54890;
PDBTitle: improved model of plant photosystem i
28c2axqA_



not modelled 5.9 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below