Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3147_(nuoC)_3512625_3513335
DateThu Aug 8 16:20:33 BST 2019
Unique Job IDea2b5581ea2db6f3
SequenceMSPPNQDAQE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.528 Y:56.532 Z:44.769
Model (left) based on template c6gcsG_
Top template information
PDB header:oxidoreductase
Chain: G: PDB Molecule:30-kda protein (nugm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
Confidence and coverage
Confidence:100.0% Coverage: 72%
171 residues ( 72% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6gcsG_



100.0 33
PDB header:oxidoreductase
Chain: G: PDB Molecule:30-kda protein (nugm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
2c5ldwC_



100.0 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class1
3c3mcrA_



100.0 63
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh dehydrogenase, subunit c;
PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution
4d2fug51



100.0 32
Fold:Nqo5-like
Superfamily:Nqo5-like
Family:Nqo5-like
5c6cfwK_



100.0 24
PDB header:membrane protein
Chain: K: PDB Molecule:membrane-bound hydrogenase subunit beta;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
6c6humJ_



100.0 33
PDB header:proton transport
Chain: J: PDB Molecule:nad(p)h-quinone oxidoreductase subunit j;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
7d2p06a1



70.4 45
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:AF0060-like
8c2p06A_



70.4 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af_0060;
PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304
9c3s2xB_



59.1 25
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
10d1ru3a_



49.8 25
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Acetyl-CoA synthase
11c3gitA_



35.4 28
PDB header:transferase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase/acetyl-coa synthase subunit
PDBTitle: crystal structure of a truncated acetyl-coa synthase
12d1oaoc_



34.9 28
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Acetyl-CoA synthase
13c3kfwX_



21.7 36
PDB header:structural genomics, unknown function
Chain: X: PDB Molecule:uncharacterized protein;
PDBTitle: uncharacterized protein rv0674 from mycobacterium tuberculosis
14c1bl1A_



14.1 46
PDB header:hormone receptor
Chain: A: PDB Molecule:parathyroid hormone receptor;
PDBTitle: pth receptor n-terminus fragment, nmr, 1 structure
15c3kwlA_



13.8 19
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori
16c2fq8A_



12.1 29
PDB header:unknown function
Chain: A: PDB Molecule:2f;
PDBTitle: nmr structure of 2f associated with lipid disc
17c2fq5A_



12.1 29
PDB header:unknown function
Chain: A: PDB Molecule:peptide 2f;
PDBTitle: nmr structure of 2f associated with lipid disc
18d2f05a1



11.5 22
Fold:PAH2 domain
Superfamily:PAH2 domain
Family:PAH2 domain
19c3v8vB_



9.7 16
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna large subunit methyltransferase l;
PDBTitle: crystal structure of bifunctional methyltransferase ycby (rlmlk) from2 escherichia coli, sam binding
20c5a96A_



9.1 44
PDB header:viral protein
Chain: A: PDB Molecule:polyhedrin;
PDBTitle: crystal structure of lymantria dispar cpv14 polyhedra
21d1es6a2



not modelled 8.6 50
Fold:EV matrix protein
Superfamily:EV matrix protein
Family:EV matrix protein
22c5o60D_



not modelled 8.1 25
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l3;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
23c4wfbB_



not modelled 8.0 19
PDB header:ribosome
Chain: B: PDB Molecule:50s ribosomal protein l3;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with bc-3205
24c2mcdA_



not modelled 7.9 47
PDB header:hydrolase
Chain: A: PDB Molecule:murine norovirus 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus ns1/2 d94e mutant
25c3tcqA_



not modelled 7.8 40
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: crystal structure of matrix protein vp40 from ebola virus sudan
26c3hq2A_



not modelled 7.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:bacillus subtilis m32 carboxypeptidase;
PDBTitle: bsucp crystal structure
27c1es6A_



not modelled 7.5 50
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: crystal structure of the matrix protein of ebola virus
28c5b0vA_



not modelled 7.0 50
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: crystal structure of marburg virus vp40 dimer
29c1vw3C_



not modelled 6.7 21
PDB header:ribosome
Chain: C: PDB Molecule:54s ribosomal protein l9, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
30c6ogdB_



not modelled 6.7 23
PDB header:toxin
Chain: B: PDB Molecule:toxin subunit yena2;
PDBTitle: cryo-em structure of yentca in its prepore state
31d2gycb1



not modelled 6.7 18
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Ribosomal protein L3
32c3oe3B_



not modelled 6.3 16
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of plic-st, periplasmic lysozyme inhibitor of c-type2 lysozyme from salmonella typhimurium
33c3echC_



not modelled 6.3 36
PDB header:transcription, transcription regulation
Chain: C: PDB Molecule:25-mer fragment of protein armr;
PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr
34c5mlcE_



not modelled 6.3 19
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l3, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
35c5nz8A_



not modelled 6.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase with cellotetraose2 and phosphate bound
36d1s5qb_



not modelled 5.9 25
Fold:PAH2 domain
Superfamily:PAH2 domain
Family:PAH2 domain
37c1odpA_



not modelled 5.9 33
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
38c1odrA_



not modelled 5.9 33
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40
39c1odqA_



not modelled 5.9 33
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
40c5uz9B_



not modelled 5.7 25
PDB header:immune system/rna
Chain: B: PDB Molecule:crispr-associated protein csy2;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
41c2ks1B_



not modelled 5.6 42
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
42c5nz7A_



not modelled 5.3 12
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase ligand free form
43d2j01e1



not modelled 5.2 21
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Ribosomal protein L3
44c6e1cB_



not modelled 5.1 19
PDB header:metal binding protein
Chain: B: PDB Molecule:di-heme enzyme;
PDBTitle: crystal structure of a maug-like protein associated with microbial2 copper homeostasis
45d2ga5a1



not modelled 5.1 24
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
46c4dz4D_



not modelled 5.1 24
PDB header:hydrolase
Chain: D: PDB Molecule:agmatinase;
PDBTitle: x-ray crystal structure of a hypothetical agmatinase from burkholderia2 thailandensis

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