Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3154_(nuoJ)_3521136_3521924
DateThu Aug 8 16:20:34 BST 2019
Unique Job IDfbf1f40d998b3df1
SequenceMTAVLASDVI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.837 Y:60.695 Z:45.858
Model (left) based on template c6nbxG_
Top template information
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
Confidence and coverage
Confidence:100.0% Coverage: 72%
189 residues ( 72% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6nbxG_
100.0 28
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
2c3rkoF_
100.0 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
3c6humG_
100.0 32
PDB header:proton transport
Chain: G: PDB Molecule:nadh dehydrogenase subunit 6;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
4c6gcs6_
100.0 14
PDB header:oxidoreductase
Chain: 6: PDB Molecule:nd6 subunit (nu6m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
5c4heaJ_
100.0 32
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-quinone oxidoreductase subunit 10;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
6c5xtdm_
98.8 16
PDB header:oxidoreductase/electron transport
Chain: M: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: cryo-em structure of human respiratory complex i
7c6g2jJ_
98.7 15
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-ubiquinone oxidoreductase chain 6;
PDBTitle: mouse mitochondrial complex i in the active state
8c5ldwJ_
98.5 17
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-ubiquinone oxidoreductase chain 6;
PDBTitle: structure of mammalian respiratory complex i, class1
9c6cfwD_
97.5 12
PDB header:membrane protein
Chain: D: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
10c4djiA_
52.6 13
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
11d2fd5a2
42.8 16
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
12c2m20B_
41.4 38
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
13c3rkoM_
39.6 17
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
14c6cfwG_
37.2 9
PDB header:membrane protein
Chain: G: PDB Molecule:monovalent cation/h+ antiporter subunit c;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
15d1sgva1
36.0 30
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
16c3kp9A_
33.6 12
PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
17c6e2fC_
31.8 10
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: cryo-em structure of human trpv6 in complex with calmodulin
18c4or2A_
30.5 9
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562, metabotropic glutamate receptor 1;
PDBTitle: human class c g protein-coupled metabotropic glutamate receptor 1 in2 complex with a negative allosteric modulator
19c5ir6B_
24.8 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
20c5gapG_
21.4 27
PDB header:transcription
Chain: G: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: body region of the u4/u6.u5 tri-snrnp
21c5is0E_
not modelled 21.3 18
PDB header:transport protein
Chain: E: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: structure of trpv1 in complex with capsazepine, determined in lipid2 nanodisc
22c6dvyC_
not modelled 19.7 15
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: cryo-em structure of mouse trpv3 in complex with 2-aminoethoxydiphenyl2 borate (2-apb)
23c4xtrG_
not modelled 17.9 60
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:pep12p;
PDBTitle: structure of get3 bound to the transmembrane domain of pep12
24c5o9zE_
not modelled 17.7 20
PDB header:splicing
Chain: E: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
25c5lq3F_
not modelled 17.4 6
PDB header:transport protein
Chain: F: PDB Molecule:cmeb;
PDBTitle: structures and transport dynamics of the campylobacter jejuni2 multidrug efflux pump cmeb
26c6mhvD_
not modelled 16.9 17
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: structure of human trpv3 in the presence of 2-apb in c4 symmetry
27c1qleB_
not modelled 16.1 6
PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit cytochrome2 c oxidase in the completely oxidized state complexed with an antibody3 fv fragment
28c6iedA_
not modelled 15.2 18
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
29c5wdaL_
not modelled 14.1 21
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
30c6humB_
not modelled 13.8 14
PDB header:proton transport
Chain: B: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 2;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
31c2qtsA_
not modelled 13.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:acid-sensing ion channel;
PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph
32c6bo5D_
not modelled 13.2 14
PDB header:membrane protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: trpv2 ion channel in partially closed state
33c6basA_
not modelled 12.9 17
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase roda;
PDBTitle: crystal structure of thermus thermophilus rod shape determining2 protein roda d255a mutant (q5six3_thet8)
34c1ar1B_
not modelled 12.2 6
PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
35c4he8I_
not modelled 11.4 13
PDB header:oxidoreductase
Chain: I: PDB Molecule:nadh-quinone oxidoreductase subunit 14;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
36c5vkqC_
not modelled 11.3 13
PDB header:membrane protein
Chain: C: PDB Molecule:no mechanoreceptor potential c isoform l;
PDBTitle: structure of a mechanotransduction ion channel drosophila nompc in2 nanodisc
37c3j5pB_
not modelled 11.2 14
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: structure of trpv1 ion channel determined by single particle electron2 cryo-microscopy
38c6humE_
not modelled 10.9 16
PDB header:proton transport
Chain: E: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 4l;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
39d2j8cl1
not modelled 10.8 13
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
40c3jcmK_
not modelled 10.6 27
PDB header:transcription
Chain: K: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of the spliceosomal u4/u6.u5 tri-snrnp
41c5ldwM_
not modelled 10.4 10
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4;
PDBTitle: structure of mammalian respiratory complex i, class1
42d2nn6i2
not modelled 10.0 41
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
43c5kdaA_
not modelled 9.8 30
PDB header:transferase
Chain: A: PDB Molecule:aromatic prenyltransferase;
PDBTitle: crystal structure of the aromatic prenyltransferase atapt from2 aspergillus terreus a8-4 in complex with dimethylallyl s-3 thiolodiphosphate and genistein
44c5ogeE_
not modelled 9.8 12
PDB header:membrane protein
Chain: E: PDB Molecule:gdp-mannose transporter 1;
PDBTitle: crystal structure of a nucleotide sugar transporter
45c6epcN_
not modelled 9.0 15
PDB header:hydrolase
Chain: N: PDB Molecule:26s proteasome non-atpase regulatory subunit 1;
PDBTitle: ground state 26s proteasome (gs2)
46c4heaK_
not modelled 8.3 11
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit 11;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
47d2dsya1
not modelled 7.7 20
Fold:TTHA1013/TTHA0281-like
Superfamily:TTHA1013/TTHA0281-like
Family:TTHA0281-like
48c4ld7N_
not modelled 7.5 23
PDB header:transferase
Chain: N: PDB Molecule:dimethylallyl tryptophan synthase;
PDBTitle: crystal structure of anapt from neosartorya fischeri
49c3ih1A_
not modelled 7.0 24
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
50c4b1yM_
not modelled 7.0 31
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-3 bound to g-actin
51c3j9pD_
not modelled 5.9 7
PDB header:transport protein
Chain: D: PDB Molecule:maltose-binding periplasmic protein, transient receptor
PDBTitle: structure of the trpa1 ion channel determined by electron cryo-2 microscopy
52c5xeaB_
not modelled 5.6 42
PDB header:viral protein
Chain: B: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of thogoto virus envelope glycoprotein
53c5do7B_
not modelled 5.6 7
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 8;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
54c4ifdI_
not modelled 5.5 43
PDB header:hydrolase/rna
Chain: I: PDB Molecule:exosome complex component csl4;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
55c6hwhX_
not modelled 5.4 25
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
56c5wtiZ_
not modelled 5.4 23
PDB header:hydrolase/dna/rna
Chain: Z: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of the crispr-associated protein in complex with2 crrna and dna
57c6eznC_
not modelled 5.2 20
PDB header:membrane protein
Chain: C: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
58c2k27A_
not modelled 5.2 22
PDB header:transcription regulator
Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
59d1q90n_
not modelled 5.1 36
Fold:Single transmembrane helix
Superfamily:PetN subunit of the cytochrome b6f complex
Family:PetN subunit of the cytochrome b6f complex
60c1h2sB_
not modelled 5.0 42
PDB header:membrane protein
Chain: B: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: molecular basis of transmenbrane signalling by sensory rhodopsin ii-2 transducer complex
61d1h2sb_
not modelled 5.0 42
Fold:Transmembrane helix hairpin
Superfamily:Htr2 transmembrane domain-like
Family:Htr2 transmembrane domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below