Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3165c_(-)_3533910_3534392
DateThu Aug 8 16:20:35 BST 2019
Unique Job ID4db825a284af1b54
SequenceMKRLIALGIF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.261 Y:23.549 Z:44.035
Model (left) based on template c6igaB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of argininosuccinate lyase from mycobacterium2 tuberculosis
Confidence and coverage
Confidence: 54.9% Coverage: 24%
39 residues ( 24% of your sequence) have been modelled with 54.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6igaB_



54.9 13
PDB header:lyase
Chain: B: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of argininosuccinate lyase from mycobacterium2 tuberculosis
2c1uusA_



51.0 21
PDB header:signal transduction
Chain: A: PDB Molecule:stat protein;
PDBTitle: structure of an activated dictyostelium stat in its2 dna-unbound form
3c3cm1C_



31.2 25
PDB header:cell cycle
Chain: C: PDB Molecule:ssga-like sporulation-specific cell division protein;
PDBTitle: crystal structure of ssga-like sporulation-specific cell division2 protein (yp_290167.1) from thermobifida fusca yx-er1 at 2.60 a3 resolution
4d1pzqa_



28.3 47
Fold:Dimerisation interlock
Superfamily:Docking domain A of the erythromycin polyketide synthase (DEBS)
Family:Docking domain A of the erythromycin polyketide synthase (DEBS)
5c6g3eA_



23.4 8
PDB header:lyase
Chain: A: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of edds lyase in complex with formate
6c4y5wD_



21.5 27
PDB header:transcription/dna
Chain: D: PDB Molecule:signal transducer and activator of transcription 6;
PDBTitle: transcription factor-dna complex
7c4y5uA_



20.9 27
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription 6;
PDBTitle: transcription factor
8d3e9va1



19.2 50
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
9d2z15a1



18.1 38
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
10c4jqfA_



17.8 32
PDB header:dna binding protein
Chain: A: PDB Molecule:cst complex subunit stn1;
PDBTitle: structure of the c-terminal domain of human telomeric stn1
11c4xboA_



17.6 19
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of full length e.coli trmj in complex with sah
12c2vxdA_



16.9 33
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: the structure of the c-terminal domain of nucleophosmin
13c1zjrA_



16.2 15
PDB header:transferase
Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase;
PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme
14d1i0aa_



15.9 13
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
15d1hy0a_



15.4 16
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
16c5td6A_



14.0 38
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
17c3drnB_



12.7 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein
PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus
18c5cfiC_



12.7 16
PDB header:hydrolase
Chain: C: PDB Molecule:bis(5'-nucleosyl)-tetraphosphatase (diadenosine
PDBTitle: structural and functional attributes of malaria parasite ap4a2 hydrolase
19d1k62a_



12.1 10
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
20c2llhA_



11.9 50
PDB header:dna binding protein, chaperone
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: nmr structure of npm1_c70
21d1tjva_



not modelled 10.6 13
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
22d1q7ha1



not modelled 10.1 44
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
23c3r90E_



not modelled 9.8 30
PDB header:rna binding protein
Chain: E: PDB Molecule:malignant t cell-amplified sequence 1;
PDBTitle: crystal structure of malignant t cell-amplified sequence 1 protein
24c2f6aJ_



not modelled 8.5 56
PDB header:cell adhesion/structural protein
Chain: J: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
25d2j7pe1



not modelled 8.4 70
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
26c3dboA_



not modelled 8.1 67
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
27c2f6aF_



not modelled 8.1 56
PDB header:cell adhesion/structural protein
Chain: F: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
28c2f6aI_



not modelled 8.1 56
PDB header:cell adhesion/structural protein
Chain: I: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
29c2f6aE_



not modelled 8.1 56
PDB header:cell adhesion/structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
30c2f6aG_



not modelled 8.1 56
PDB header:cell adhesion/structural protein
Chain: G: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
31c2f6aH_



not modelled 8.1 56
PDB header:cell adhesion/structural protein
Chain: H: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
32c3iv1F_



not modelled 8.0 43
PDB header:hydrolase
Chain: F: PDB Molecule:tumor susceptibility gene 101 protein;
PDBTitle: coiled-coil domain of tumor susceptibility gene 101
33c2n5nA_



not modelled 7.9 27
PDB header:dna binding protein
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 4;
PDBTitle: structure of an n-terminal domain of chd4
34c4bjqB_



not modelled 7.9 31
PDB header:transferase
Chain: B: PDB Molecule:penicillin binding protein transpeptidase domain protein;
PDBTitle: crystal structure of e. coli penicillin binding protein 3,2 domain v88-s165
35c3hfnA_



not modelled 7.8 30
PDB header:rna binding protein
Chain: A: PDB Molecule:asl2047 protein;
PDBTitle: crystal structure of an hfq protein from anabaena sp.
36c2ch0A_



not modelled 7.7 22
PDB header:nuclear protein
Chain: A: PDB Molecule:inner nuclear membrane protein man1;
PDBTitle: solution structure of the human man1 c-terminal domain (residues 655-2 775)
37d1okkd1



not modelled 7.6 70
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
38d1dbda_



not modelled 7.5 27
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
39c2e9fC_



not modelled 7.2 18
PDB header:lyase
Chain: C: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine
40d1z3eb1



not modelled 7.2 44
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
41c2k9yB_



not modelled 7.0 46
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
42c2k9yA_



not modelled 7.0 46
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
43c1y1uA_



not modelled 7.0 15
PDB header:signaling protein
Chain: A: PDB Molecule:signal transducer and activator of transcription 5a;
PDBTitle: structure of unphosphorylated stat5a
44c3kxyV_



not modelled 6.9 56
PDB header:chaperone/transcription inhibitor
Chain: V: PDB Molecule:exse;
PDBTitle: crystal structure of the exsc-exse complex
45c3qoqC_



not modelled 6.8 43
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
46d1utca2



not modelled 6.8 38
Fold:7-bladed beta-propeller
Superfamily:Clathrin heavy-chain terminal domain
Family:Clathrin heavy-chain terminal domain
47c3d79A_



not modelled 6.3 33
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ph0734;
PDBTitle: crystal structure of hypothetical protein ph0734.1 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
48c3mgjA_



not modelled 6.3 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1480;
PDBTitle: crystal structure of the saccharop_dh_n domain of mj1480 protein from2 methanococcus jannaschii. northeast structural genomics consortium3 target mjr83a.
49d1lb2b_



not modelled 6.2 33
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
50d1n8ja_



not modelled 6.2 24
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
51d1rj9a1



not modelled 6.1 70
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
52c1c9lA_



not modelled 6.1 38
PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:clathrin;
PDBTitle: peptide-in-groove interactions link target proteins to the b-propeller2 of clathrin
53c4ytgA_



not modelled 6.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:peptidylarginine deiminase;
PDBTitle: crystal structure of porphyromonas gingivalis peptidylarginine2 deiminase (ppad) mutant c351a in complex with dipeptide met-arg.
54c3cuxA_



not modelled 5.9 25
PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
55c5enuB_



not modelled 5.9 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase/ thiol specific antioxidant/
PDBTitle: crystal structure of an alkyl hyroperoxide reductase from burkholderia2 ambifaria
56d2daqa1



not modelled 5.8 22
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
57d2cvea1



not modelled 5.7 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:YigZ N-terminal domain-like
58c1q7hA_



not modelled 5.6 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum
59c2kgsA_



not modelled 5.5 54
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922;
PDBTitle: solution structure of the amino-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis
60c1zs7A_



not modelled 5.5 56
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ape0525;
PDBTitle: the structure of gene product ape0525 from aeropyrum pernix
61c5he9E_



not modelled 5.2 10
PDB header:protein binding
Chain: E: PDB Molecule:phage inhibitor protein;
PDBTitle: bacterial initiation protein in complex with phage inhibitor protein
62c2ysiA_



not modelled 5.2 38
PDB header:protein binding
Chain: A: PDB Molecule:transcription elongation regulator 1;
PDBTitle: solution structure of the first ww domain from the mouse2 transcription elongation regulator 1, transcription factor3 ca150
63c4v14A_



not modelled 5.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: structure and function analysis of mutt from the2 psychrofile fish pathogen aliivibrio salmonicida and the3 mesophile vibrio cholerae
64d1g2ra_



not modelled 5.1 16
Fold:YlxR-like
Superfamily:YlxR-like
Family:YlxR-like
65d2csba3



not modelled 5.0 86
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain

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