Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3166c_(-)_3534389_3535348
DateThu Aug 8 16:20:35 BST 2019
Unique Job IDd5bb85bf3a300f09
SequenceMPGTKPGSDK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.191 Y:36.261 Z:41.570
Model (left) based on template c1wolA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:122aa long conserved hypothetical protein;
PDBTitle: crystal structure of st0689, an archaeal hepn homologue
Confidence and coverage
Confidence: 68.3% Coverage: 30%
95 residues ( 30% of your sequence) have been modelled with 68.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1wolA_
68.3 11
PDB header:unknown function
Chain: A: PDB Molecule:122aa long conserved hypothetical protein;
PDBTitle: crystal structure of st0689, an archaeal hepn homologue
2c2hsbA_
46.8 12
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical upf0332 protein af0298;
PDBTitle: crystal structure of a hepn domain containing protein (af_0298) from2 archaeoglobus fulgidus at 1.95 a resolution
3c2k9yB_
32.9 21
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
4c2k9yA_
32.9 21
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
5c4nqfB_
32.4 14
PDB header:transferase
Chain: B: PDB Molecule:nucleotidyltransferase;
PDBTitle: crystal structure of hepn domain protein
6c2n7iA_
29.3 38
PDB header:hormone receptor
Chain: A: PDB Molecule:prolactin receptor;
PDBTitle: nmr structure of the prolactin receptor transmembrane domain
7c2dr1A_
23.7 28
PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
8c2hdyA_
19.0 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
9d1jqoa_
18.8 15
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
10c1jqoA_
18.8 15
PDB header:lyase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize
11c3o10D_
17.1 12
PDB header:chaperone
Chain: D: PDB Molecule:sacsin;
PDBTitle: crystal structure of the hepn domain from human sacsin
12d1ufba_
15.0 19
Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:HEPN domain
13c4xtrG_
14.5 27
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:pep12p;
PDBTitle: structure of get3 bound to the transmembrane domain of pep12
14d1utga_
13.6 19
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
15c1puoA_
13.0 25
PDB header:allergen
Chain: A: PDB Molecule:major allergen i polypeptide, fused chain 2, chain 1;
PDBTitle: crystal structure of fel d 1- the major cat allergen
16d1utra_
12.5 12
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
17c3geiB_
11.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
18d2ejna1
11.5 27
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
19c2xa0C_
10.3 42
PDB header:apoptosis
Chain: C: PDB Molecule:apoptosis regulator bax;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
20c5usrG_
10.0 16
PDB header:transferase
Chain: G: PDB Molecule:cysteine desulfurase, mitochondrial;
PDBTitle: crystal structure of human nfs1-isd11 in complex with e. coli acyl-2 carrier protein at 3.09 angstroms
21c5zsqA_
not modelled 9.8 18
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cysteine desulfurase;
PDBTitle: nifs from hydrogenimonas thermophila, soaked with l-cysteine for 4 min
22d1ccda_
not modelled 9.7 12
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
23c2ks1A_
not modelled 9.2 22
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
24c2jwaA_
not modelled 9.2 22
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
25c1xzqA_
not modelled 9.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
26c2v75A_
not modelled 8.5 20
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein nab2;
PDBTitle: n-terminal domain of nab2
27c3wy7D_
not modelled 8.1 18
PDB header:transferase
Chain: D: PDB Molecule:8-amino-7-oxononanoate synthase;
PDBTitle: crystal structure of mycobacterium smegmatis 7-keto-8-aminopelargonic2 acid (kapa) synthase biof
28c2m59A_
not modelled 8.0 21
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
29c2m59B_
not modelled 8.0 21
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
30c4eb5B_
not modelled 7.9 14
PDB header:transferase/metal binding protein
Chain: B: PDB Molecule:probable cysteine desulfurase 2;
PDBTitle: a. fulgidus iscs-iscu complex structure
31c4f40B_
not modelled 7.8 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:prostaglandin f2-alpha synthase/d-arabinose dehydrogenase;
PDBTitle: x-ray crystal structure of apo prostaglandin f synthase from2 leishmania major friedlin
32c2momC_
not modelled 7.6 19
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
33c2momB_
not modelled 7.6 19
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
34c1zzaA_
not modelled 7.4 50
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
35d2csba1
not modelled 7.2 26
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
36d1p3wa_
not modelled 6.7 29
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
37d1nvja_
not modelled 6.5 32
Fold:alpha/beta-Hammerhead
Superfamily:Molybdopterin synthase subunit MoaE
Family:Molybdopterin synthase subunit MoaE
38c2wmmA_
not modelled 6.3 13
PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein mukb;
PDBTitle: crystal structure of the hinge domain of mukb
39c3lvmB_
not modelled 6.3 29
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
40c4q76B_
not modelled 6.1 10
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase 2, chloroplastic;
PDBTitle: crystal structure of nfs2 c384s mutant, the plastidial cysteine2 desulfurase from arabidopsis thaliana
41c6jbzC_
not modelled 5.9 18
PDB header:transferase
Chain: C: PDB Molecule:molybdenum cofactor biosynthesis protein e;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
42c6jc0D_
not modelled 5.8 26
PDB header:transferase
Chain: D: PDB Molecule:putative molybdenum cofactor biosynthesis protein;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
43c5usrC_
not modelled 5.8 18
PDB header:transferase
Chain: C: PDB Molecule:cysteine desulfurase, mitochondrial;
PDBTitle: crystal structure of human nfs1-isd11 in complex with e. coli acyl-2 carrier protein at 3.09 angstroms
44c4bk8A_
not modelled 5.8 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:desulfoferrodoxin, ferrous iron-binding region;
PDBTitle: superoxide reductase (neelaredoxin) from ignicoccus2 hospitalis
45c6hwhX_
not modelled 5.8 14
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
46c3exmA_
not modelled 5.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase sc4828;
PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp
47c5b87B_
not modelled 5.7 21
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of a cysteine desulfurase from thermococcus2 onnurineus na1 in complex with alanine at 2.3 angstrom resolution
48c2lowA_
not modelled 5.7 11
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
49c3c0uA_
not modelled 5.6 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yaeq;
PDBTitle: crystal structure of e.coli yaeq protein
50c1bm4A_
not modelled 5.4 25
PDB header:viral protein
Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid);
PDBTitle: momlv capsid protein major homology region peptide analog
51c1w7pD_
not modelled 5.4 9
PDB header:protein transport
Chain: D: PDB Molecule:vps36p, ylr417w;
PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36)
52c2qieA_
not modelled 5.4 23
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex with precursor2 z
53c5o4uK_
not modelled 5.3 25
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
54c2k59B_
not modelled 5.3 21
PDB header:transport protein
Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: nmr structures of the second transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit
55c2wp4A_
not modelled 5.3 27
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2 1;
PDBTitle: crystal structure of rv3119 from mycobacterium tuberculosis
56c3rpfB_
not modelled 5.3 18
PDB header:transferase
Chain: B: PDB Molecule:molybdopterin synthase catalytic subunit;
PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695
57d2ot9a1
not modelled 5.3 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:YaeQ-like
58c4l3uA_
not modelled 5.2 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3571 family protein (abaye3784) from2 acinetobacter baumannii aye at 1.95 a resolution
59c2omdB_
not modelled 5.2 36
PDB header:lyase
Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2;
PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5
60c3gehA_
not modelled 5.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
61d1y76a1
not modelled 5.1 10
Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
62c2gl7C_
not modelled 5.1 41
PDB header:transcription
Chain: C: PDB Molecule:b-cell lymphoma 9 protein;
PDBTitle: crystal structure of a beta-catenin/bcl9/tcf4 complex
63c3sl9D_
not modelled 5.1 41
PDB header:signaling protein, protein binding
Chain: D: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below