Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3172c_(-)_3540879_3541361
DateThu Aug 8 16:20:36 BST 2019
Unique Job ID7e2be7e79a054bec
SequenceMSVALLREMF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.989 Y:30.431 Z:33.052
Model (left) based on template c3g0kA_
Top template information
PDB header:ca-binding protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution
Confidence and coverage
Confidence: 88.1% Coverage: 44%
70 residues ( 44% of your sequence) have been modelled with 88.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g0kA_
88.1 13
PDB header:ca-binding protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution
2c3hk4B_
75.3 11
PDB header:lyase
Chain: B: PDB Molecule:mlr7391 protein;
PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution
3c3robC_
71.3 7
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
4d2f99a1
69.8 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SnoaL-like polyketide cyclase
5d2gexa1
66.8 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SnoaL-like polyketide cyclase
6c5x7lA_
66.1 11
PDB header:isomerase
Chain: A: PDB Molecule:tsrd;
PDBTitle: structure of tsrd from streptomyces laurentii
7c3f9sB_
64.7 15
PDB header:lyase
Chain: B: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (lferr_0659) from2 acidithiobacillus ferrooxidans atcc at 1.76 a resolution
8c4lgqA_
64.4 19
PDB header:lyase
Chain: A: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (cv_0247) from2 chromobacterium violaceum atcc 12472 at 2.72 a resolution
9c3fsdA_
64.4 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
10d2geya1
64.3 22
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SnoaL-like polyketide cyclase
11d2r4ia1
59.1 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
12c6of9G_
56.2 18
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
13c3bb9D_
56.1 10
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
14d1mi1a1
53.0 22
Fold:BEACH domain
Superfamily:BEACH domain
Family:BEACH domain
15c5ig5E_
51.9 10
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
16c3kspA_
39.7 15
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
17c3kkgA_
39.0 15
PDB header:lyase
Chain: A: PDB Molecule:putative snoal-like polyketide cyclase;
PDBTitle: crystal structure of putative snoal-like polyketide cyclase2 (yp_509242.1) from jannaschia sp. ccs1 at 1.40 a resolution
18c3k0zB_
38.0 11
PDB header:lyase
Chain: B: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of putative polyketide cyclase (np_977253.1) from2 bacillus cereus atcc 10987 at 1.91 a resolution
19d1hkxa_
38.0 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
20c3f7sA_
37.2 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
21d1t77a1
not modelled 35.8 19
Fold:BEACH domain
Superfamily:BEACH domain
Family:BEACH domain
22c5ig4A_
not modelled 35.7 8
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
23d3ebta1
not modelled 35.6 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SnoaL-like polyketide cyclase
24d3cu3a1
not modelled 32.4 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
25c4z9cB_
not modelled 32.3 30
PDB header:transferase
Chain: B: PDB Molecule:subtilase cytotoxin subunit b-like protein;
PDBTitle: ecpltab oxidized
26c1mi1A_
not modelled 31.5 22
PDB header:signaling protein
Chain: A: PDB Molecule:neurobeachin;
PDBTitle: crystal structure of the ph-beach domain of human2 neurobeachin
27d2ux0a1
not modelled 29.5 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
28c4ovmE_
not modelled 29.3 19
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
29d1vr5a1
not modelled 25.0 11
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
30c3hx8A_
not modelled 23.5 10
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
31d3b7ca1
not modelled 22.9 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
32d1sjwa_
not modelled 21.3 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SnoaL-like polyketide cyclase
33c4k6lC_
not modelled 21.1 28
PDB header:toxin
Chain: C: PDB Molecule:putative pertussis-like toxin subunit;
PDBTitle: structure of typhoid toxin
34c4i4kB_
not modelled 19.7 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
35c4fprC_
not modelled 19.1 15
PDB header:protein binding
Chain: C: PDB Molecule:avirulence effector avrlm4-7;
PDBTitle: structure of a fungal protein
36c5z62N_
not modelled 18.3 27
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
37c3t0yB_
not modelled 18.2 31
PDB header:transcription regulator/protein binding
Chain: B: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
38c5whvF_
not modelled 17.1 31
PDB header:toxin
Chain: F: PDB Molecule:artb protein;
PDBTitle: crystal structure of artb
39d3bb9a1
not modelled 16.2 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
40c3t0yD_
not modelled 16.2 31
PDB header:transcription regulator/protein binding
Chain: D: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
41c2kesA_
not modelled 16.2 40
PDB header:protein binding
Chain: A: PDB Molecule:synphilin-1;
PDBTitle: solution structure of the coiled-coil domain of synphilin-1
42c4hr1A_
not modelled 15.1 24
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of pav1-137, a protein from the virus pav1 that infects2 pyrococcus abyssi.
43c1tuhA_
not modelled 15.1 6
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein egc068;
PDBTitle: structure of bal32a from a soil-derived mobile gene cassette
44d1tuha_
not modelled 15.1 6
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Hypothetical protein egc068 from a soil-derived mobile gene cassette
45c3h3hA_
not modelled 13.9 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized snoal-like protein;
PDBTitle: crystal structure of a snoal-like protein of unknown function2 (bth_ii0226) from burkholderia thailandensis e264 at 1.60 a3 resolution
46d1m0da_
not modelled 13.5 53
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Endonuclease I (Holliday junction resolvase)
47c4jzlA_
not modelled 12.5 33
PDB header:apoptosis, transport protein
Chain: A: PDB Molecule:b-cell receptor-associated protein 31;
PDBTitle: crystal structure of bap31 vded at alkaline ph
48c3msoA_
not modelled 12.4 6
PDB header:isomerase
Chain: A: PDB Molecule:steroid delta-isomerase;
PDBTitle: crystal structure of a steroid delta-isomerase (np_250810.1) from2 pseudomonas aeruginosa at 2.57 a resolution
49c3gzrA_
not modelled 12.4 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
50c4w7yB_
not modelled 11.9 28
PDB header:transport protein
Chain: B: PDB Molecule:b-cell receptor-associated protein 29;
PDBTitle: dimeric bap29 vded with disulfide bonds in crystal contacts
51c5aiiP_
not modelled 11.7 20
PDB header:hydrolase
Chain: P: PDB Molecule:limonene-1,2-epoxide hydrolase;
PDBTitle: discovery and characterization of thermophilic limonene-1,2-epoxide2 hydrolases from hot spring metagenomic libraries.3 ch55-sample-peg complex
52c4pfwA_
not modelled 11.3 14
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate-binding protein;
PDBTitle: crystal structure of mannohexaose bound oligopeptide abc transporter,2 periplasmic oligopeptide-binding protein (tm1226) from thermotoga3 maritima at 2.2 a resolution
53c1algA_
not modelled 11.1 75
PDB header:oxidoreductase
Chain: A: PDB Molecule:p11;
PDBTitle: solution structure of an hgr inhibitor, nmr, 10 structures
54c4efzB_
not modelled 11.0 26
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of a hypothetical metallo-beta-lactamase from2 burkholderia pseudomallei
55c3k6qB_
not modelled 10.8 21
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
56d3bofa2
not modelled 10.4 29
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
57c6d34B_
not modelled 10.1 11
PDB header:biosynthetic protein
Chain: B: PDB Molecule:terc;
PDBTitle: apo crystal structure of terc, a terfestatin biosynthesis enzyme
58c3dwqD_
not modelled 10.0 21
PDB header:toxin
Chain: D: PDB Molecule:subtilase cytotoxin, subunit b;
PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli with neu5gc-2,3gal-1,3glcnac
59c4f3nA_
not modelled 9.9 38
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized acr, cog1565 superfamily;
PDBTitle: high resolution native crystal structure of an uncharacterized acr,2 cog1565 superfamily protein from burkholderia thailandensis, solved3 by iodide ion sad
60c1lw7A_
not modelled 9.9 24
PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulator nadr;
PDBTitle: nadr protein from haemophilus influenzae
61c3g8zA_
not modelled 9.8 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function with cystatin-like fold;
PDBTitle: crystal structure of protein of unknown function with cystatin-like2 fold (np_639274.1) from xanthomonas campestris at 1.90 a resolution
62c5aigA_
not modelled 9.8 10
PDB header:hydrolase
Chain: A: PDB Molecule:limonene-1,2-epoxide hydrolase;
PDBTitle: discovery and characterization of thermophilic limonene-1,2-epoxide2 hydrolases from hot spring metagenomic libraries. tomsk-sample-3 valpromide complex
63d1wjna_
not modelled 9.5 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
64d1ss6a_
not modelled 9.0 35
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
65c3fgyB_
not modelled 8.9 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein (bxe_b1094) from burkholderia2 xenovorans lb400 at 1.59 a resolution
66c4uwqK_
not modelled 8.8 71
PDB header:hydrolase
Chain: K: PDB Molecule:soxy protein;
PDBTitle: crystal structure of the disulfide-linked complex of the2 thiosulfodyrolase soxb with the carrier-protein soxyz from3 thermus thermophilus
67c3iwcD_
not modelled 8.7 11
PDB header:lyase
Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase;
PDBTitle: t. maritima adometdc complex with s-adenosylmethionine methyl ester
68c3gwrA_
not modelled 8.5 13
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
69c3bl4B_
not modelled 8.1 22
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (arth_0117) from2 arthrobacter sp. fb24 at 2.20 a resolution
70c1jdhB_
not modelled 8.1 35
PDB header:transcription
Chain: B: PDB Molecule:htcf-4;
PDBTitle: crystal structure of beta-catenin and htcf-4
71d1pdaa2
not modelled 7.9 32
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
72c2o7jA_
not modelled 7.9 11
PDB header:sugar binding protein
Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic
PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose
73d1rh8a_
not modelled 7.8 17
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
74c2b3rA_
not modelled 7.5 31
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4-phosphate 3-kinase c2 domain-
PDBTitle: crystal structure of the c2 domain of class ii phosphatidylinositide2 3-kinase c2
75c4ytoA_
not modelled 7.4 20
PDB header:cell cycle
Chain: A: PDB Molecule:synaptonemal complex protein 1;
PDBTitle: structure of coiled-coil domain of sycp1
76d1u5ua_
not modelled 7.4 9
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Allene oxide synthase
77d1lt7a_
not modelled 7.2 29
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
78c1e1hC_
not modelled 7.1 18
PDB header:hydrolase
Chain: C: PDB Molecule:botulinum neurotoxin type a light chain;
PDBTitle: crystal structure of recombinant botulinum neurotoxin type a light2 chain, self-inhibiting zn endopeptidase.
79d1f83a_
not modelled 7.0 19
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Clostridium neurotoxins, catalytic domain
80d1tp6a_
not modelled 6.9 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:PA1314-like
81d2gxfa1
not modelled 6.8 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
82c4boeA_
not modelled 6.8 70
PDB header:cholesterol binding protein
Chain: A: PDB Molecule:japanin;
PDBTitle: japanin from rhipicephalus appendiculatus bound to cholesterol:2 tetragonal crystal form
83c6a56A_
not modelled 6.7 18
PDB header:sugar binding protein
Chain: A: PDB Molecule:ajlec;
PDBTitle: ajlec from the sea anemone anthopleura japonica
84d2vzsa2
not modelled 6.7 41
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
85c6bmcA_
not modelled 6.6 38
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: the structure of a dimeric type ii dah7ps associated with pyocyanin2 biosynthesis in pseudomonas aeruginosa
86d1nwwa_
not modelled 6.6 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Limonene-1,2-epoxide hydrolase-like
87d1wgla_
not modelled 6.6 25
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:CUE domain
88c3ry3B_
not modelled 6.6 3
PDB header:transport protein
Chain: B: PDB Molecule:putative solute-binding protein;
PDBTitle: putative solute-binding protein from yersinia pestis.
89c4gl8B_
not modelled 6.5 3
PDB header:protein transport
Chain: B: PDB Molecule:oligopeptide abc transporter oppaiv;
PDBTitle: x-ray crystal structure of a periplasmic oligopeptide-binding2 protein/oligopeptide abc transporter(oppaiv) from borrelia3 burgdorferi
90c3k3qB_
not modelled 6.5 18
PDB header:immune system
Chain: B: PDB Molecule:botulinum neurotoxin type a;
PDBTitle: crystal structure of a llama antibody complexed with the c. botulinum2 neurotoxin serotype a catalytic domain
91d1byna_
not modelled 6.4 14
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
92d1b0nb_
not modelled 6.4 33
Fold:Dimerisation interlock
Superfamily:SinR repressor dimerisation domain-like
Family:SinR repressor dimerisation domain-like
93c1b0nB_
not modelled 6.4 33
PDB header:transcription regulator
Chain: B: PDB Molecule:protein (sini protein);
PDBTitle: sinr protein/sini protein complex
94c3ehcA_
not modelled 6.4 15
PDB header:unknown function
Chain: A: PDB Molecule:snoal-like polyketide cyclase;
PDBTitle: crystal structure of a snoal-like polyketide cyclase (atu3018) from2 agrobacterium tumefaciens str. c58 at 2.12 a resolution
95c5ibzD_
not modelled 6.3 30
PDB header:lyase
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a novel cyclase (pfam04199).
96c3ke7A_
not modelled 6.2 5
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
97d1flia_
not modelled 6.1 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
98c3h5jA_
not modelled 6.0 67
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis
99c1ztyA_
not modelled 6.0 14
PDB header:sugar binding protein, signaling protein
Chain: A: PDB Molecule:chitin oligosaccharide binding protein;
PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite