Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3175_(-)_3542857_3544344
DateThu Aug 8 16:20:36 BST 2019
Unique Job IDed1082f69d63bf57
SequenceMAMSAKASDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.588 Y:59.165 Z:58.480
Model (left) based on template d2f2aa1
Top template information
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
Confidence and coverage
Confidence:100.0% Coverage: 93%
461 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2f2aa1



100.0 25
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
2c6diiH_



100.0 24
PDB header:hydrolase
Chain: H: PDB Molecule:fatty acid amide hydrolase;
PDBTitle: structure of arabidopsis fatty acid amide hydrolase in complex with2 methyl linolenyl fluorophosphonate
3c4wj3A_



100.0 30
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
4c3h0rP_



100.0 27
PDB header:ligase
Chain: P: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
5c4yj6A_



100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:aryl acylamidase;
PDBTitle: the crystal structure of a bacterial aryl acylamidase belonging to the2 amidase signature (as) enzymes family
6d1m22a_



100.0 28
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
7c3a2qA_



100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:6-aminohexanoate-cyclic-dimer hydrolase;
PDBTitle: structure of 6-aminohexanoate cyclic dimer hydrolase complexed with2 substrate
8c4gysA_



100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: granulibacter bethesdensis allophanate hydrolase co-crystallized with2 malonate
9c3kfuE_



100.0 31
PDB header:ligase/rna
Chain: E: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the transamidosome
10c5h6sB_



100.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase s179a mutant complexed with a2 substrate
11c5h6tB_



100.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase from microbacterium sp. strain hm58-2
12d1mt5a_



100.0 23
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
13c4cp8C_



100.0 24
PDB header:hydrolase
Chain: C: PDB Molecule:allophanate hydrolase;
PDBTitle: structure of the amidase domain of allophanate hydrolase2 from pseudomonas sp strain adp
14c2vyaB_



100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:fatty-acid amide hydrolase 1;
PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750
15c6c6gA_



100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:biuret hydrolase;
PDBTitle: an unexpected vestigial protein complex reveals the evolutionary2 origins of an s-triazine catabolic enzyme. inhibitor bound complex.
16c2dc0A_



100.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:probable amidase;
PDBTitle: crystal structure of amidase
17d2gi3a1



100.0 25
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
18c3a1iA_



100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:amidase;
PDBTitle: crystal structure of rhodococcus sp. n-771 amidase complexed2 with benzamide
19d1ocka_



100.0 26
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
20c4issA_



100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: semet-substituted kluyveromyces lactis allophanate hydrolase
21c5i8iD_



not modelled 100.0 22
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
22c5ewqC_



not modelled 100.0 21
PDB header:hydrolase
Chain: C: PDB Molecule:amidase;
PDBTitle: the crystal structure of an amidase family protein from bacillus2 anthracis str. ames
23c4n0hA_



not modelled 100.0 21
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab
24c3r4kD_



not modelled 56.5 20
PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
25d1h5wa_



not modelled 50.7 15
Fold:Upper collar protein gp10 (connector protein)
Superfamily:Upper collar protein gp10 (connector protein)
Family:Upper collar protein gp10 (connector protein)
26c1ijgE_



not modelled 50.5 15
PDB header:viral protein
Chain: E: PDB Molecule:upper collar protein;
PDBTitle: structure of the bacteriophage phi29 head-tail connector2 protein
27c5tjjA_



not modelled 44.7 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of icir transcriptional regulator from2 alicyclobacillus acidocaldarius
28c2kvuA_



not modelled 37.2 7
PDB header:transcription regulator
Chain: A: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: solution nmr structure of sap domain of mkl/myocardin-like2 protein 1 from h.sapiens, northeast structural genomics3 consortium target target hr4547e
29c2do1A_



not modelled 35.6 12
PDB header:gene regulation
Chain: A: PDB Molecule:nuclear protein hcc-1;
PDBTitle: solution structure of the sap domain of human nuclear2 protein hcc-1
30c3k2qA_



not modelled 35.6 15
PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
31c2higA_



not modelled 34.0 20
PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
32d1k75a_



not modelled 27.1 20
Fold:ALDH-like
Superfamily:ALDH-like
Family:L-histidinol dehydrogenase HisD
33d1h1js_



not modelled 26.6 18
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
34c6an0A_



not modelled 25.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of histidinol dehydrogenase from elizabethkingia2 anophelis
35c3obfA_



not modelled 23.7 17
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, iclr family;
PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302
36c4m1eC_



not modelled 23.5 17
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from2 planctomyces limnophilus dsm 3776, nysgrc target 029364.
37c4e94A_



not modelled 23.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:mccc family protein;
PDBTitle: crystal structure of mccf-like protein from streptococcus pneumoniae
38c1zrjA_



not modelled 23.2 14
PDB header:dna binding protein
Chain: A: PDB Molecule:e1b-55kda-associated protein 5 isoform c;
PDBTitle: solution structure of the sap domain of human e1b-55kda-2 associated protein 5 isoform c
39c5xoeA_



not modelled 23.2 18
PDB header:transferase
Chain: A: PDB Molecule:atp-dependent 6-phosphofructokinase;
PDBTitle: crystal structure of the apo staphylococcus aureus phosphofructokinase
40d2do1a1



not modelled 21.7 11
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
41c1dvpA_



not modelled 21.7 9
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
42c3zyqA_



not modelled 21.0 7
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
43d1zrja1



not modelled 20.6 14
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
44c4lnaA_



not modelled 20.4 17
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from spirosoma2 linguale dsm 74, nysgrc target 029362
45c2c4kD_



not modelled 20.2 24
PDB header:regulatory protein
Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase-associated protein
PDBTitle: crystal structure of human phosphoribosylpyrophosphate synthetase-2 associated protein 39 (pap39)
46c2na9A_



not modelled 20.0 50
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
47c4g4sP_



not modelled 19.8 27
PDB header:hydrolase/chaperone
Chain: P: PDB Molecule:proteasome assembly chaperone 2;
PDBTitle: structure of proteasome-pba1-pba2 complex
48c4uc0A_



not modelled 19.4 15
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of a purine nucleoside phosphorylase (psi-nysgrc-2 029736) from agrobacterium vitis
49c2na8A_



not modelled 19.3 50
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
50c4nsnC_



not modelled 18.6 10
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase from2 porphyromonas gingivalis atcc 33277, nysgrc target 030972,3 orthorhombic symmetry
51d1w53a_



not modelled 18.2 12
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Phosphoserine phosphatase RsbU, N-terminal domain
52c4g07A_



not modelled 18.2 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:histidinol dehydrogenase;
PDBTitle: the crystal structure of the c366s mutant of hdh from brucella suis
53c4l5cE_



not modelled 18.1 11
PDB header:transferase
Chain: E: PDB Molecule:s-methyl-5'-thioadenosine phosphorylase;
PDBTitle: methylthioadenosine phosphorylase from schistosoma mansoni in complex2 with adenine in space group p212121
54d2f48a1



not modelled 16.8 20
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
55d3claa_



not modelled 16.7 7
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
56d1li4a2



not modelled 16.7 25
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
57d1saza2



not modelled 16.3 7
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
58c4twbB_



not modelled 16.3 17
PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase;
PDBTitle: sulfolobus solfataricus ribose-phosphate pyrophosphokinase
59c3p0jD_



not modelled 16.0 14
PDB header:ligase
Chain: D: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: leishmania major tyrosyl-trna synthetase in complex with tyrosinol,2 triclinic crystal form 1
60c2kveA_



not modelled 15.9 17
PDB header:hormone
Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor;
PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf)
61c5f1yA_



not modelled 15.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:mccc family protein;
PDBTitle: crystal structure of ba3275, the member of s66 family of serine2 peptidases
62d1y88a1



not modelled 15.7 11
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:Hypothetical protein AF1548, C-terminal domain
63c2iv3B_



not modelled 15.6 18
PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
64c4gicB_



not modelled 14.9 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of a putative histidinol dehydrogenase (target psi-2 014034) from methylococcus capsulatus
65c3ilvA_



not modelled 14.9 13
PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii
66c4grdA_



not modelled 14.9 22
PDB header:lyase,isomerase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from burkholderia cenocepacia j2315
67d2dloa2



not modelled 14.9 56
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
68d1q23a_



not modelled 14.8 17
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
69d1zhva2



not modelled 14.7 19
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
70c2kqvA_



not modelled 14.5 35
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: sars coronavirus-unique domain (sud): three-domain molecular2 architecture in solution and rna binding. i: structure of the sud-m3 domain of sud-mc
71d1dvpa1



not modelled 14.4 9
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
72d4pfka_



not modelled 14.3 14
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
73c2lz1A_



not modelled 14.0 16
PDB header:transcription
Chain: A: PDB Molecule:nuclear factor erythroid 2-related factor 2;
PDBTitle: solution nmr structure of the dna-binding domain of human nf-e2-2 related factor 2, northeast structural genomics consortium (nesg)3 target hr3520o
74c2vc6A_



not modelled 13.9 18
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of mosa from s. meliloti with pyruvate bound
75d1ggaa2



not modelled 13.4 23
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
76d1g99a2



not modelled 13.2 3
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
77c2jzfA_



not modelled 12.9 35
PDB header:viral protein
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: nmr conformer closest to the mean coordinates of the domain 513-651 of2 the sars-cov nonstructural protein nsp3
78c2i9dC_



not modelled 12.9 8
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
79d1tf1a_



not modelled 12.8 20
Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
80c2jmkA_



not modelled 12.7 17
PDB header:protein binding
Chain: A: PDB Molecule:hypothetical protein ta0956;
PDBTitle: solution structure of ta0956
81c3dahB_



not modelled 12.6 18
PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase;
PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei
82d1sknp_



not modelled 12.5 14
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
83c4qmkB_



not modelled 12.5 41
PDB header:toxin
Chain: B: PDB Molecule:type iii secretion system effector protein exou;
PDBTitle: crystal structure of type iii effector protein exou (exou)
84c2g7uB_



not modelled 12.0 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
85c6aphA_



not modelled 11.9 25
PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of adenosylhomocysteinase from elizabethkingia2 anophelis nuhp1 in complex with nad and adenosine
86c5ifkC_



not modelled 11.8 25
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: purine nucleoside phosphorylase
87c3mq0A_



not modelled 11.7 25
PDB header:transcription repressor
Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon;
PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr
88c3c5yD_



not modelled 11.4 19
PDB header:isomerase
Chain: D: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
89c2mfqB_



not modelled 11.1 50
PDB header:transferase
Chain: B: PDB Molecule:bdnf/nt-3 growth factors receptor;
PDBTitle: nmr solution structures of frs2a ptb domain with neurotrophin receptor2 trkb
90c1zxxA_



not modelled 11.1 12
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
91c3p4iA_



not modelled 10.9 7
PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
92c1wtjB_



not modelled 10.8 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:ureidoglycolate dehydrogenase;
PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato
93c1vbiA_



not modelled 10.7 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase;
PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
94c2hkeB_



not modelled 10.6 30
PDB header:lyase
Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative;
PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei
95d2g82a2



not modelled 10.6 22
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
96c3izbF_



not modelled 10.6 16
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
97c3dezA_



not modelled 10.5 17
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans
98d1i27a_



not modelled 10.5 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal domain of the rap74 subunit of TFIIF
99d1v8ba2



not modelled 10.1 25
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase

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Transmembrane helix prediction 

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