Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3180c_(-)_3549251_3549685
DateThu Aug 8 16:20:37 BST 2019
Unique Job ID771910bb8ac91c4d
SequenceVPLVYFDASA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.469 Y:33.820 Z:43.635
Model (left) based on template d2fe1a1
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.8% Coverage: 89%
128 residues ( 89% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2fe1a1



99.8 29
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2c2fe1A_



99.8 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
3d1v8pa_



99.7 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c1v8pK_



99.7 20
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
5c5wzfB_



99.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
6c4xgrG_



99.6 24
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
7c5x3tD_



99.4 22
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
8d2h1ca1



99.4 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
9c3zvkC_



99.3 9
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
10c6a7vG_



99.3 14
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
11d1y82a1



99.3 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c6nklA_



99.2 12
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
13c3h87B_



99.2 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
14d1v96a1



99.2 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
15c4chgC_



99.1 17
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
16c3tndC_



99.1 14
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
17c5sv2A_



99.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
18c5l6mC_



99.1 11
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
19c3dboB_



99.0 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
20d1w8ia_



98.6 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c3i8oA_



not modelled 98.6 12
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22c3ix7A_



not modelled 98.4 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
23c5ywwA_



not modelled 98.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
24c5f4hF_



not modelled 98.2 16
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25d1o4wa_



not modelled 98.2 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
26c2lcqA_



not modelled 98.2 16
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 97.7 14
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 96.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 96.2 16
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c6g5iy_



not modelled 96.2 23
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
31c2mdtA_



not modelled 95.6 14
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
32c4mj7B_



not modelled 93.8 10
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c2hwyB_



not modelled 76.0 14
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
34d1wbha1



not modelled 41.6 12
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
35c6oviA_



not modelled 31.0 13
PDB header:lyase
Chain: A: PDB Molecule:keto-deoxy-phosphogluconate aldolase;
PDBTitle: crystal structure of kdpg aldolase from legionella pneumophila with2 pyruvate captured at low ph as a covalent carbinolamine intermediate
36d1vhca_



not modelled 26.5 13
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
37c2yw3E_



not modelled 22.8 23
PDB header:lyase
Chain: E: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-
PDBTitle: crystal structure analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-2 deydro-3-deoxyphosphogluconate aldolase from tthb1
38c4yakD_



not modelled 21.0 14
PDB header:ligase
Chain: D: PDB Molecule:beta subunit of acyl-coa synthetase (ndp forming);
PDBTitle: ca. korarchaeum cryptofilum dinucleotide forming acetyl-coenzyme a2 synthetase 1 in complex with coenzyme a, acetyl-coenzyme a and with3 phosphorylated phosphohistidine segment (site i orientation)
39d2ebfx2



not modelled 17.2 15
Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:PMT domain-like
40d1mxsa_



not modelled 16.0 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
41d1hx0a2



not modelled 16.0 25
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
42c4fxeB_



not modelled 13.6 7
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
43c4e38A_



not modelled 13.5 14
PDB header:lyase
Chain: A: PDB Molecule:keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
PDBTitle: crystal structure of probable keto-hydroxyglutarate-aldolase from2 vibrionales bacterium swat-3 (target efi-502156)
44c1jqsB_



not modelled 13.0 28
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
45c4qccA_



not modelled 12.9 14
PDB header:structural protein, lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-
PDBTitle: structure of a cube-shaped, highly porous protein cage designed by2 fusing symmetric oligomeric domains
46c4bk9B_



not modelled 12.6 13
PDB header:lyase
Chain: B: PDB Molecule:2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxo
PDBTitle: crystal structure of 2-keto-3-deoxy-6-phospho-gluconate aldolase from2 zymomonas mobilis atcc 29191
47c2k29A_



not modelled 12.2 7
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
48d1hi9a_



not modelled 11.7 17
Fold:Dipeptide transport protein
Superfamily:Dipeptide transport protein
Family:Dipeptide transport protein
49d2gjpa2



not modelled 11.3 10
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
50c2zkr9_



not modelled 10.9 25
PDB header:ribosomal protein/rna
Chain: 9: PDB Molecule:60s ribosomal protein l32;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
51d3dhpa2



not modelled 10.8 25
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
52d1v32a_



not modelled 10.8 16
Fold:SWIB/MDM2 domain
Superfamily:SWIB/MDM2 domain
Family:SWIB/MDM2 domain
53d1g94a2



not modelled 10.7 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
54c3v33A_



not modelled 10.2 23
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
55d1piia2



not modelled 10.2 23
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
56c3fesB_



not modelled 10.1 13
PDB header:atp binding protein
Chain: B: PDB Molecule:atp-dependent clp endopeptidase;
PDBTitle: crystal structure of the atp-dependent clp protease clpc from2 clostridium difficile
57d1jaea2



not modelled 9.8 20
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
58d1y81a1



not modelled 9.7 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
59c1bplA_



not modelled 9.7 10
PDB header:glycosyltransferase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
60c1mwoA_



not modelled 9.4 40
PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase;
PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase
61d1mxga2



not modelled 9.2 40
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
62c1jdaA_



not modelled 9.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
63d1vc4a_



not modelled 9.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
64c4hecB_



not modelled 9.0 13
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
65c3labA_



not modelled 8.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate) aldolase;
PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica
66d1nowa1



not modelled 8.5 33
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
67c1ud8A_



not modelled 8.4 10
PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
68d1hvxa2



not modelled 8.2 40
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
69c5guiA_



not modelled 8.2 16
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein clpc1, chloroplastic;
PDBTitle: crystal structure of the n-terminal domain of caseinolytic protease2 associated chaperone clpc1 from arabidopsis thaliana
70d1yhta1



not modelled 8.1 24
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
71d1qvra1



not modelled 8.0 21
Fold:Double Clp-N motif
Superfamily:Double Clp-N motif
Family:Double Clp-N motif
72c1j1hA_



not modelled 7.9 26
PDB header:rna binding protein
Chain: A: PDB Molecule:small protein b;
PDBTitle: solution structure of a tmrna-binding protein, smpb, from2 thermus thermophilus
73c3v32B_



not modelled 7.9 26
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
74c1p6vC_



not modelled 7.8 26
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ssra-binding protein;
PDBTitle: crystal structure of the trna domain of transfer-messenger2 rna in complex with smpb
75d1p6va_



not modelled 7.8 26
Fold:Small protein B (SmpB)
Superfamily:Small protein B (SmpB)
Family:Small protein B (SmpB)
76c2h9aA_



not modelled 7.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron-sulfur
PDBTitle: corrinoid iron-sulfur protein
77d1a53a_



not modelled 7.7 16
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
78c3ff4A_



not modelled 7.5 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
79c2qpuB_



not modelled 7.4 20
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
80d1em9a_



not modelled 7.4 13
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
81c2duwA_



not modelled 7.3 26
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
82c4y0bA_



not modelled 7.2 7
PDB header:protein binding
Chain: A: PDB Molecule:double clp-n motif protein;
PDBTitle: the structure of arabidopsis clpt1
83c1gcyA_



not modelled 7.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
84c3cceY_



not modelled 7.2 35
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l32e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation u2535a
85d1vqoy1



not modelled 7.2 35
Fold:Barstar-like
Superfamily:Ribosomal protein L32e
Family:Ribosomal protein L32e
86c4hh5A_



not modelled 7.2 18
PDB header:protein binding
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: n-terminal domain (1-163) of clpv1 atpase from e.coli eaec sci1 t6ss.
87c5u2lA_



not modelled 7.2 20
PDB header:protein binding
Chain: A: PDB Molecule:heat shock protein 104;
PDBTitle: crystal structure of the hsp104 n-terminal domain from candida2 albicans
88d2d3na2



not modelled 7.1 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
89c4uqwA_



not modelled 6.9 15
PDB header:chaperone
Chain: A: PDB Molecule:protein clpv1;
PDBTitle: coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
90c2v82A_



not modelled 6.9 13
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase;
PDBTitle: kdpgal complexed to kdpgal
91d1jaka1



not modelled 6.9 19
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
92c6emwD_



not modelled 6.9 10
PDB header:chaperone
Chain: D: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: structure of s.aureus clpc in complex with meca
93c1jd7A_



not modelled 6.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
94d2f2ab1



not modelled 6.9 20
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
95c6gyaA_



not modelled 6.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:a-amylase;
PDBTitle: amylase in complex with branched ligand
96d1ud2a2



not modelled 6.5 10
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97d1gcya2



not modelled 6.5 20
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
98d1tfra2



not modelled 6.5 8
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
99c3blpX_



not modelled 6.4 25
PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase

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