Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3187_(-)_3553138_3554022
DateThu Aug 8 16:20:37 BST 2019
Unique Job IDcc4a01f5888c9278
SequenceLRWGVESICT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:71.692 Y:73.080 Z:105.391
Model (left) based on template c4fcyA_
Top template information
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposase;
PDBTitle: crystal structure of the bacteriophage mu transpososome
Confidence and coverage
Confidence: 99.9% Coverage: 88%
260 residues ( 88% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4fcyA_
99.9 14
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposase;
PDBTitle: crystal structure of the bacteriophage mu transpososome
2c3f9kV_
99.9 17
PDB header:viral protein, recombination
Chain: V: PDB Molecule:integrase;
PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd
3c5cz1B_
99.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain of mmtv integrase
4d1bcoa2
99.8 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:mu transposase, core domain
5d1c0ma2
99.8 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
6d1asua_
99.8 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
7c1c0mA_
99.8 23
PDB header:transferase
Chain: A: PDB Molecule:protein (integrase);
PDBTitle: crystal structure of rsv two-domain integrase
8c3nf9A_
99.7 18
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:integrase;
PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design
9c3jcaE_
99.7 20
PDB header:viral protein
Chain: E: PDB Molecule:integrase;
PDBTitle: core model of the mouse mammary tumor virus intasome
10c1bcoA_
99.7 16
PDB header:transposase
Chain: A: PDB Molecule:bacteriophage mu transposase;
PDBTitle: bacteriophage mu transposase core domain
11d1exqa_
99.7 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
12c5u1cA_
99.7 15
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 integrase, sso7d chimera;
PDBTitle: structure of tetrameric hiv-1 strand transfer complex intasome
13c3kksB_
99.7 17
PDB header:dna binding protein
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii
14c4mq3A_
99.7 20
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: the 1.1 angstrom structure of catalytic core domain of fiv integrase
15c1ex4A_
99.7 16
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: hiv-1 integrase catalytic core and c-terminal domain
16c3hpgC_
99.7 16
PDB header:transferase
Chain: C: PDB Molecule:integrase;
PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces
17c1k6yB_
99.7 16
PDB header:transferase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase
18d1hyva_
99.6 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
19c5m0rF_
99.6 17
PDB header:hydrolase
Chain: F: PDB Molecule:integrase;
PDBTitle: cryo-em reconstruction of the maedi-visna virus (mvv) strand transfer2 complex
20d1cxqa_
99.6 23
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
21d1c6va_
not modelled 99.6 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
22c5ejkG_
not modelled 99.5 19
PDB header:transferase/dna
Chain: G: PDB Molecule:gag-pro-pol polyprotein;
PDBTitle: crystal structure of the rous sarcoma virus intasome
23c3hosA_
not modelled 99.5 11
PDB header:transferase, dna binding protein/dna
Chain: A: PDB Molecule:transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
24c3l2tB_
not modelled 99.4 16
PDB header:recombination/dna
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)
25c5u1cD_
not modelled 99.1 16
PDB header:viral protein
Chain: D: PDB Molecule:hiv-1 integrase, sso7d chimera;
PDBTitle: structure of tetrameric hiv-1 strand transfer complex intasome
26c3dlrA_
not modelled 99.0 18
PDB header:transferase
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain from pfv integrase
27c3l2uA_
not modelled 98.7 12
PDB header:recombination/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv)2 intasome in complex with magnesium and gs91373 (elvitegravir)
28c1u78A_
not modelled 98.1 12
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
29c6paxA_
not modelled 98.0 17
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
30d1pdnc_
not modelled 98.0 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
31c5cr4B_
not modelled 97.6 10
PDB header:hydrolase
Chain: B: PDB Molecule:sleeping beauty transposase, sb100x;
PDBTitle: crystal structure of the sleeping beauty transposase catalytic domain
32c2f7tA_
not modelled 97.3 15
PDB header:dna binding protein
Chain: A: PDB Molecule:mos1 transposase;
PDBTitle: crystal structure of the catalytic domain of mos1 mariner2 transposase
33c2k27A_
not modelled 97.2 15
PDB header:transcription regulator
Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
34c3f2kB_
not modelled 96.5 16
PDB header:transferase
Chain: B: PDB Molecule:histone-lysine n-methyltransferase setmar;
PDBTitle: structure of the transposase domain of human histone-lysine2 n-methyltransferase setmar
35c5byhM_
not modelled 95.8 23
PDB header:transferase
Chain: M: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
36c5ui5I_
not modelled 95.5 25
PDB header:transcription/dna
Chain: I: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: crystal structure of aquifex aeolicus sigman bound to promoter dna
37c6gh5M_
not modelled 95.5 19
PDB header:transcription
Chain: M: PDB Molecule:rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: cryo-em structure of bacterial rna polymerase-sigma54 holoenzyme2 transcription open complex
38c5nwtM_
not modelled 94.1 22
PDB header:transferase
Chain: M: PDB Molecule:rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
39d2jn6a1
not modelled 94.0 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
40c1hlvA_
not modelled 93.1 20
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
41c2ahqA_
not modelled 89.9 30
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
42c2ao9H_
not modelled 89.8 13
PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:phage protein;
PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579
43c1b4aA_
not modelled 89.4 11
PDB header:repressor
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
44c4i7hA_
not modelled 88.6 17
PDB header:transcription
Chain: A: PDB Molecule:peroxide stress sensing regulator;
PDBTitle: structural basis for peroxide sensing and gene regulation by perr from2 streptococcus pyogenes
45c5unkA_
not modelled 88.4 25
PDB header:dna binding protein
Chain: A: PDB Molecule:sleeping beauty transposase;
PDBTitle: nmr structure of the red subdomain of the sleeping beauty transposase
46c2o03A_
not modelled 88.3 21
PDB header:gene regulation
Chain: A: PDB Molecule:probable zinc uptake regulation protein furb;
PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator
47c3mwmA_
not modelled 88.1 19
PDB header:transcription
Chain: A: PDB Molecule:putative metal uptake regulation protein;
PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
48c3hefB_
not modelled 88.0 9
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
49d2ao9a1
not modelled 87.8 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Nanomeric phage protein-like
50c1z4hA_
not modelled 87.7 20
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
51d1aoya_
not modelled 87.6 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
52c2fe3B_
not modelled 87.6 13
PDB header:dna binding protein
Chain: B: PDB Molecule:peroxide operon regulator;
PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch
53c2mt3A_
not modelled 86.8 20
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: structure of -24 dna binding domain of sigma 54 from e.coli
54c4mtdA_
not modelled 86.6 18
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:zinc uptake regulation protein;
PDBTitle: zinc uptake regulator complexed with zinc and dna
55c5nl9B_
not modelled 86.4 11
PDB header:dna binding protein
Chain: B: PDB Molecule:transcriptional regulator (fur family);
PDBTitle: crystal structure of a peroxide stress regulator from leptospira2 interrogans
56c2xigA_
not modelled 86.3 9
PDB header:transcription
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites
57d1b4aa1
not modelled 86.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
58c4j2nB_
not modelled 86.1 17
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
59c5fd6A_
not modelled 86.0 13
PDB header:transcription
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: zinc-bound manganese uptake regulator
60d1mzba_
not modelled 86.0 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FUR-like
61c4razB_
not modelled 85.7 11
PDB header:metal binding protein
Chain: B: PDB Molecule:dna-binding transcriptional dual regulator of siderophore
PDBTitle: crystal structure of magnetospirillum gryphiswaldense msr-1 holo-fur
62d2p5ka1
not modelled 85.3 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
63d1umqa_
not modelled 84.8 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
64c1umqA_
not modelled 84.8 14
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
65c4j2nA_
not modelled 84.7 18
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
66c6fkgC_
not modelled 84.3 9
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
67c2w57A_
not modelled 83.1 19
PDB header:metal transport
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains
68c5nbcD_
not modelled 82.5 19
PDB header:dna binding protein
Chain: D: PDB Molecule:ferric uptake regulation protein;
PDBTitle: structure of prokaryotic transcription factors
69c3ereD_
not modelled 82.5 15
PDB header:dna binding protein/dna
Chain: D: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
70c2o8kA_
not modelled 81.2 25
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
71c3eyyA_
not modelled 81.1 10
PDB header:transport
Chain: A: PDB Molecule:putative iron uptake regulatory protein;
PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition
72d1etxa_
not modelled 79.5 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
73c6dk4A_
not modelled 78.8 10
PDB header:metal transport
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of campylobacter jejuni peroxide stress regulator
74c2rn7A_
not modelled 77.5 19
PDB header:unknown function
Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
75d1fipa_
not modelled 77.3 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
76c4l5eA_
not modelled 76.1 21
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
77c2fu4B_
not modelled 75.9 19
PDB header:dna binding protein
Chain: B: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator)
78c3v4gA_
not modelled 75.0 17
PDB header:dna binding protein
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6
79c4etsB_
not modelled 74.6 15
PDB header:metal binding protein
Chain: B: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of campylobacter jejuni ferric uptake regulator
80d1f9na1
not modelled 72.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
81d1rzsa_
not modelled 72.5 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
82c6amaO_
not modelled 72.0 13
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
83c3e7lD_
not modelled 70.9 20
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
84c1g2hA_
not modelled 69.6 8
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
85d1g2ha_
not modelled 69.6 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
86c3o60A_
not modelled 68.5 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0861 protein;
PDBTitle: the crystal structure of lin0861 from listeria innocua to 2.8a
87d2id3a1
not modelled 68.4 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
88c2lvsA_
not modelled 68.0 23
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr solution structure of a crispr repeat binding protein
89c2lcvA_
not modelled 68.0 10
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
90c2m8gX_
not modelled 67.9 12
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
91d1t56a1
not modelled 66.9 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
92c2r0qF_
not modelled 66.0 19
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
93d1stza1
not modelled 64.8 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
94c3f1bA_
not modelled 64.4 16
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
95c5yszA_
not modelled 63.9 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: transcriptional regulator celr-cellobiose complex
96c2elhA_
not modelled 63.3 15
PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
97d2bjca1
not modelled 61.9 7
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
98d2g3ba1
not modelled 61.8 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
99c5l0pA_
not modelled 61.4 20
PDB header:de novo protein
Chain: A: PDB Molecule:transcription factor etv6, transcription factor etv6,
PDBTitle: symmetry-based assembly of a two-dimensional protein lattice
100d1jt6a1
not modelled 61.2 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
101d1qpza1
not modelled 61.0 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
102c1bdhA_
not modelled 60.8 12
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
103c2l0kA_
not modelled 60.5 14
PDB header:transcription
Chain: A: PDB Molecule:stage iii sporulation protein d;
PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna
104d2vkva1
not modelled 59.8 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
105c3kjxD_
not modelled 59.7 5
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
106d2fq4a1
not modelled 59.7 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
107c2l8nA_
not modelled 59.3 5
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
108c4mk6A_
not modelled 59.1 15
PDB header:transcription regulator
Chain: A: PDB Molecule:probable dihydroxyacetone kinase regulator dhsk_reg;
PDBTitle: crystal structure of probable dihydroxyacetone kinase regulator2 dhsk_reg from listeria monocytogenes egd-e
109c2guhA_
not modelled 57.4 11
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
110d1r8da_
not modelled 57.3 8
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
111d1k78a2
not modelled 57.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
112d1vi0a1
not modelled 56.9 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
113c4ac6A_
not modelled 56.5 11
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor acnr;
PDBTitle: corynebacterium glutamicum acnr au derivative structure
114c3ni7A_
not modelled 56.0 8
PDB header:transcription regulator
Chain: A: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of the tetr transcriptional regulator from2 nitrosomonas europaea atcc 19718
115c3ppbB_
not modelled 55.7 16
PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
116c2dg7A_
not modelled 55.3 21
PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
117c3b81A_
not modelled 55.3 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, acrr family;
PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution
118d1rkta1
not modelled 55.1 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
119c5dajB_
not modelled 55.1 21
PDB header:transcription regulator
Chain: B: PDB Molecule:nald;
PDBTitle: crystal structure of nald, the secondary repressor of mexab-oprm2 multidrug efflux pump in pseudomonas aeruginosa
120c1efaA_
not modelled 55.0 7
PDB header:transcription/dna
Chain: A: PDB Molecule:lac repressor;
PDBTitle: crystal structure of the lac repressor dimer bound to operator and the2 anti-inducer onpf

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite