Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3188_(-)_3554295_3554642
DateThu Aug 8 16:20:37 BST 2019
Unique Job ID196775edda293576
SequenceMAVTLDRAVE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.292 Y:27.959 Z:28.573
Model (left) based on template c6fkgC_
Top template information
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
Confidence and coverage
Confidence:100.0% Coverage: 93%
107 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fkgC_
100.0 27
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
2c6gw6B_
99.9 14
PDB header:toxin
Chain: B: PDB Molecule:xre antitoxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
3c6d0hB_
99.4 33
PDB header:toxin
Chain: B: PDB Molecule:pars: cog5642 (duf2384) antitoxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
4c2kfsA_
98.4 24
PDB header:dna-binding protein
Chain: A: PDB Molecule:conserved hypothetical regulatory protein;
PDBTitle: nmr structure of rv2175c
5c3fmyA_
98.3 19
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
6c3gn5B_
98.2 19
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
7c5jaaB_
98.1 23
PDB header:toxin
Chain: B: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higba2 toxin-antitoxin complex
8c5j9iH_
98.1 24
PDB header:antitoxin
Chain: H: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higa2 antitoxin c-terminal domain
9c2ppxA_
97.9 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
10d2ppxa1
97.9 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
11c1y9qA_
97.8 17
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
12c2o38A_
97.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
13d2o38a1
97.8 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
14c1b0nA_
97.7 11
PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
15d1b0na2
97.7 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
16c2kpjA_
97.7 23
PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
17c4ghjA_
97.7 15
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: 1.75 angstrom crystal structure of transcriptional regulator ftom2 vibrio vulnificus.
18c4ybaA_
97.7 11
PDB header:gene regulation
Chain: A: PDB Molecule:regulatory protein c;
PDBTitle: the structure of the c.kpn2i controller protein
19d2a6ca1
97.7 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
20c3omtA_
97.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
21c4pu4C_
not modelled 97.6 18
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
22c2ef8A_
not modelled 97.6 14
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
23c3op9A_
not modelled 97.6 22
PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
24d1rioa_
not modelled 97.5 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
25c3mlfC_
not modelled 97.5 14
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
26c3dnvB_
not modelled 97.5 12
PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator hipb;
PDBTitle: mdt protein
27c3bs3A_
not modelled 97.5 20
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
28d1r69a_
not modelled 97.5 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
29c3f52A_
not modelled 97.5 17
PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
30c2mezA_
not modelled 97.5 24
PDB header:rna binding protein
Chain: A: PDB Molecule:multiprotein bridging factor (mbp-like);
PDBTitle: flexible anchoring of archaeal mbf1 on ribosomes suggests role as2 recruitment factor
31d1x57a1
not modelled 97.5 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
32c3f6wE_
not modelled 97.5 13
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
33d1lmb3_
not modelled 97.5 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
34c3vk0B_
not modelled 97.5 10
PDB header:dna binding protein
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of hypothetical transcription factor nhtf from2 neisseria
35c2bnoA_
not modelled 97.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase from s.2 wedmorenis.
36d1utxa_
not modelled 97.4 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
37d1adra_
not modelled 97.4 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
38d1sq8a_
not modelled 97.4 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
39d2icta1
not modelled 97.4 12
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
40c2fjrB_
not modelled 97.4 13
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
41c3eusB_
not modelled 97.4 19
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
42c2jvlA_
not modelled 97.4 17
PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
43c3ivpD_
not modelled 97.4 25
PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
44d1llib_
not modelled 97.4 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
45d1y9qa1
not modelled 97.4 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
46c3trbA_
not modelled 97.4 13
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
47c3zhiA_
not modelled 97.4 15
PDB header:transcription
Chain: A: PDB Molecule:ci;
PDBTitle: n-terminal domain of the ci repressor from bacteriophage tp901-1
48c3clcC_
not modelled 97.4 15
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
49c3kxaD_
not modelled 97.3 12
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae
50d1y7ya1
not modelled 97.3 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
51c2ebyA_
not modelled 97.3 13
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
52d2croa_
not modelled 97.3 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
53d2r1jl1
not modelled 97.3 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
54c5uk3J_
not modelled 97.3 16
PDB header:lyase
Chain: J: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of cyanase from t. urticae
55d2b5aa1
not modelled 97.3 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
56c3b7hA_
not modelled 97.3 9
PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
57c2xcjB_
not modelled 97.2 17
PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
58c3cecA_
not modelled 97.2 15
PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
59c3t76A_
not modelled 97.2 8
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
60c2ewtA_
not modelled 97.2 21
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd
61c4mcxE_
not modelled 97.2 15
PDB header:toxin
Chain: E: PDB Molecule:antidote protein;
PDBTitle: p. vulgaris higba structure, crystal form 2
62c6f8sA_
not modelled 97.1 12
PDB header:toxin
Chain: A: PDB Molecule:xre family transcriptional regulator;
PDBTitle: toxin-antitoxin complex grata
63c5d4zF_
not modelled 97.1 12
PDB header:dna binding protein
Chain: F: PDB Molecule:repressor;
PDBTitle: crystal structure of repressor from salmonella-temperate phage
64c5woqA_
not modelled 97.1 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator clgr;
PDBTitle: crystal structure of an xre family protein transcriptional regulator2 from mycobacterium smegmatis
65c3lisB_
not modelled 97.0 13
PDB header:transcription
Chain: B: PDB Molecule:csp231i c protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)
66c3bdnB_
not modelled 96.9 16
PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
67d2ofya1
not modelled 96.9 20
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
68c4o8bA_
not modelled 96.8 15
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of transcriptional regulator bswr
69c2mqkA_
not modelled 96.8 8
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
70c3pxpA_
not modelled 96.7 19
PDB header:transcription regulator
Chain: A: PDB Molecule:helix-turn-helix domain protein;
PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution
71c2wusR_
not modelled 96.2 11
PDB header:structural protein
Chain: R: PDB Molecule:putative uncharacterized protein;
PDBTitle: bacterial actin mreb assembles in complex with cell shape protein rodz
72c5jubA_
not modelled 96.1 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of comr from s.thermophilus in complex with dna and2 its signalling peptide coms.
73c3fymA_
not modelled 96.1 5
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus
74c5d50I_
not modelled 96.0 24
PDB header:dna binding protein
Chain: I: PDB Molecule:repressor;
PDBTitle: crystal structure of rep-ant complex from salmonella-temperate phage
75c3qyxD_
not modelled 95.9 18
PDB header:transcription/dna
Chain: D: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of mycobacterium tuberculosis espr in complex with a2 small dna fragment
76c5fd4B_
not modelled 95.8 11
PDB header:transcription regulator
Chain: B: PDB Molecule:comr;
PDBTitle: crystal structure of comr from streptococcus suis
77c4rykA_
not modelled 95.5 18
PDB header:dna binding protein
Chain: A: PDB Molecule:lmo0325 protein;
PDBTitle: crystal structure of a putative transcriptional regulator from2 listeria monocytogenes egd-e
78c4yv9C_
not modelled 95.3 16
PDB header:dna binding protein/inhibitor
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of streptococcus dysgalactiae shp pheromone2 receptor rgg2
79d2hsga1
not modelled 95.1 23
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
80c2grmB_
not modelled 95.1 12
PDB header:transcription
Chain: B: PDB Molecule:prgx;
PDBTitle: crystal structure of prgx/icf10 complex
81d1rzsa_
not modelled 95.1 37
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
82c2auwB_
not modelled 95.1 22
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
83d1uxca_
not modelled 95.0 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
84c3bd1B_
not modelled 94.9 26
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
85c4j2nB_
not modelled 94.9 22
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
86d1lcda_
not modelled 94.7 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
87c4gqmA_
not modelled 94.6 13
PDB header:unknown function
Chain: A: PDB Molecule:ct009;
PDBTitle: crystal structure of a helix-turn-helix containing hypothetical2 protein (ct009) from chlamydia trachomatis in a sub-domain swap3 conformation
88d2bjca1
not modelled 94.6 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
89c4j2nA_
not modelled 94.6 22
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
90c2axzC_
not modelled 94.4 11
PDB header:transcription
Chain: C: PDB Molecule:prgx;
PDBTitle: crystal structure of prgx/ccf10 complex
91d1qpza1
not modelled 94.4 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
92c6amaO_
not modelled 94.3 26
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
93c1efaA_
not modelled 94.3 21
PDB header:transcription/dna
Chain: A: PDB Molecule:lac repressor;
PDBTitle: crystal structure of the lac repressor dimer bound to operator and the2 anti-inducer onpf
94c3kjxD_
not modelled 94.2 21
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
95c6b9tH_
not modelled 94.2 17
PDB header:oxidoreductase
Chain: H: PDB Molecule:methylphosphonate synthase;
PDBTitle: crystal structure of mpns with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
96d1uxda_
not modelled 94.1 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
97c6b9rD_
not modelled 94.1 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:hydroxyethylphosphonate dioxygenase;
PDBTitle: streptomyces albus hepd with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
98d2ao9a1
not modelled 93.9 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Nanomeric phage protein-like
99d1efaa1
not modelled 93.9 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
100c2l8nA_
not modelled 93.7 24
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
101c4go1A_
not modelled 93.5 19
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
102c2lcvA_
not modelled 93.4 24
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
103c2w48D_
not modelled 93.4 12
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
104c1bdhA_
not modelled 93.3 22
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
105c1lbgB_
not modelled 93.3 21
PDB header:
PDB COMPND:
106d2bgca1
not modelled 93.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
107c3h5tA_
not modelled 93.1 21
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
108c5yszA_
not modelled 93.1 19
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: transcriptional regulator celr-cellobiose complex
109d1r71a_
not modelled 92.7 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
110c1zvvA_
not modelled 92.0 26
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
111c2qfcB_
not modelled 91.9 24
PDB header:transcription regulation
Chain: B: PDB Molecule:plcr protein;
PDBTitle: crystal structure of bacillus thuringiensis plcr complexed with papr
112d2auwa1
not modelled 91.8 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
113d1j9ia_
not modelled 91.7 19
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Terminase gpNU1 subunit domain
114d1umqa_
not modelled 91.7 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
115c1umqA_
not modelled 91.7 11
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
116d1s4ka_
not modelled 91.5 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
117c1u78A_
not modelled 91.4 18
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
118d1k78a1
not modelled 91.4 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
119c2m8gX_
not modelled 91.3 19
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
120d1vz0a1
not modelled 91.3 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite