Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3189_(-)_3554639_3555259
DateThu Aug 8 16:20:38 BST 2019
Unique Job ID61a7bbca363b2aff
SequenceVKLADAIATA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.896 Y:42.816 Z:33.982
Model (left) based on template c6fkgB_
Top template information
PDB header:toxin
Chain: B: PDB Molecule:rv1989c (mbct);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
Confidence and coverage
Confidence:100.0% Coverage: 71%
147 residues ( 71% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fkgB_
100.0 22
PDB header:toxin
Chain: B: PDB Molecule:rv1989c (mbct);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
2c6gw6A_
98.3 23
PDB header:toxin
Chain: A: PDB Molecule:res toxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
3c6d0hA_
98.1 20
PDB header:toxin
Chain: A: PDB Molecule:part: cog5654 (res domain) toxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
4d1a9xa3
42.3 23
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
5c5dotA_
41.0 29
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
6c5douC_
39.6 27
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
7d1zd3a1
27.0 16
Fold:HAD-like
Superfamily:HAD-like
Family:YihX-like
8d1qyia_
25.6 24
Fold:HAD-like
Superfamily:HAD-like
Family:Hypothetical protein MW1667 (SA1546)
9c3nvtA_
25.0 22
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
10c6ghbB_
24.0 18
PDB header:protein binding
Chain: B: PDB Molecule:upf0413 protein gk0824;
PDBTitle: crystal structure of spx in complex with yjbh (oxidized)
11d2b0ca1
23.1 17
Fold:HAD-like
Superfamily:HAD-like
Family:YihX-like
12d1fqva1
22.5 20
Fold:F-box domain
Superfamily:F-box domain
Family:F-box domain
13d1x4ka2
22.3 44
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
14c2pkeA_
22.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:haloacid delahogenase-like family hydrolase;
PDBTitle: crystal structure of haloacid delahogenase-like family hydrolase2 (np_639141.1) from xanthomonas campestris at 1.81 a resolution
15d1a9xa4
21.9 19
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
16d2fpwa1
21.6 20
Fold:HAD-like
Superfamily:HAD-like
Family:Histidinol phosphatase-like
17c4jyrG_
18.4 17
PDB header:hydrolase
Chain: G: PDB Molecule:d,d-heptose 1,7-bisphosphate phosphatase;
PDBTitle: crystal structure of d,d-heptose 1,7-bisphosphate phosphatase from2 burkholderia thailandensis
18c2hcuA_
17.6 24
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus mutans
19c1m6vE_
17.5 18
PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
20d2g80a1
17.3 17
Fold:HAD-like
Superfamily:HAD-like
Family:Enolase-phosphatase E1
21c5y4gA_
not modelled 15.8 16
PDB header:transferase
Chain: A: PDB Molecule:ambp3;
PDBTitle: apo structure of ambp3
22c3vbaE_
not modelled 15.4 19
PDB header:lyase
Chain: E: PDB Molecule:isopropylmalate/citramalate isomerase small subunit;
PDBTitle: crystal structure of methanogen 3-isopropylmalate isomerase small2 subunit
23c3i28A_
not modelled 13.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase 2;
PDBTitle: crystal structure of soluble epoxide hydrolase
24c3q3wB_
not modelled 13.6 29
PDB header:transferase
Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni.
25c2pkpA_
not modelled 13.2 29
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase small subunit;
PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271)
26c5e27B_
not modelled 12.6 24
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
27c3h5jA_
not modelled 12.5 24
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis
28d1u8wa_
not modelled 12.4 26
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
29c4ig4A_
not modelled 12.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:thermostable nppase;
PDBTitle: crystal structure of single mutant thermostable nppase (n86s) from2 geobacillus stearothermophilus
30c4jb3A_
not modelled 11.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of bt_0970, a had family phosphatase from2 bacteroides thetaiotaomicron vpi-5482, target efi-501083, with bound3 sodium and glycerol, closed lid, ordered loop
31c4s0mC_
not modelled 10.9 19
PDB header:transferase
Chain: C: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of nucleoside diphosphate kinase at 1.92 a2 resolution from acinetobacter baumannii
32c2x4dB_
not modelled 10.7 10
PDB header:hydrolase
Chain: B: PDB Molecule:phospholysine phosphohistidine inorganic pyrophosphate
PDBTitle: crystal structure of human phospholysine phosphohistidine inorganic2 pyrophosphate phosphatase lhpp
33c5dedA_
not modelled 10.4 25
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase yjbm;
PDBTitle: crystal structure of the small alarmone synthethase 1 from bacillus2 subtilis bound to its product pppgpp
34c3qgmC_
not modelled 10.0 22
PDB header:hydrolase
Chain: C: PDB Molecule:p-nitrophenyl phosphatase (pho2);
PDBTitle: p-nitrophenyl phosphatase from archaeoglobus fulgidus
35c2i6xA_
not modelled 10.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like family;
PDBTitle: the structure of a predicted had-like family hydrolase from2 porphyromonas gingivalis.
36c4ee7A_
not modelled 9.8 19
PDB header:transferase
Chain: A: PDB Molecule:prenyltransferase;
PDBTitle: crystal structure of the novel phenazine prenyltransferase epzp in2 complex with s-thiolodiphosphate (methylated)
37d1v7la_
not modelled 9.3 19
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
38c2g80C_
not modelled 9.3 17
PDB header:hydrolase
Chain: C: PDB Molecule:protein utr4;
PDBTitle: crystal structure of utr4 protein (unknown transcript 4 protein)2 (yel038w) from saccharomyces cerevisiae at 2.28 a resolution
39d1zs9a1
not modelled 9.2 17
Fold:HAD-like
Superfamily:HAD-like
Family:Enolase-phosphatase E1
40c2xm5A_
not modelled 8.9 28
PDB header:transferase
Chain: A: PDB Molecule:cloq;
PDBTitle: structural and mechanistic analysis of the magnesium-independent2 aromatic prenyltransferase cloq from the clorobiocin biosynthetic3 pathway
41c4dfdB_
not modelled 8.6 13
PDB header:hydrolase
Chain: B: PDB Molecule:putative haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of had family enzyme bt-2542 (target efi-501088)2 from bacteroides thetaiotaomicron, magnesium complex
42c1cr6A_
not modelled 8.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor
43d1yv9a1
not modelled 8.5 22
Fold:HAD-like
Superfamily:HAD-like
Family:NagD-like
44d1w0ma_
not modelled 8.4 25
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
45c3l9dA_
not modelled 8.3 22
PDB header:transferase
Chain: A: PDB Molecule:putative gtp pyrophosphokinase;
PDBTitle: the crystal structure of smu.1046c from streptococcus mutans ua159
46c3ddhA_
not modelled 8.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:putative haloacid dehalogenase-like family hydrolase;
PDBTitle: the structure of a putative haloacid dehalogenase-like family2 hydrolase from bacteroides thetaiotaomicron vpi-5482
47d1ys9a1
not modelled 8.1 13
Fold:HAD-like
Superfamily:HAD-like
Family:NagD-like
48c2l0rA_
not modelled 8.1 18
PDB header:hydrolase,toxin
Chain: A: PDB Molecule:lethal factor;
PDBTitle: conformational dynamics of the anthrax lethal factor catalytic center
49d2d6fa2
not modelled 7.8 18
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
50c6fgkA_
not modelled 7.7 19
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase ywac;
PDBTitle: crystal structure of the small alarmone synthethase 2 from bacillus2 subtilis
51c2lo9A_
not modelled 7.6 46
PDB header:toxin
Chain: A: PDB Molecule:mu-conotoxin buiiib;
PDBTitle: nmr solution structure of mu-contoxin buiiib
52c5odcD_
not modelled 7.5 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:methyl-viologen reducing hydrogenase subunit d;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus at 2.3 a resolution
53c3umgD_
not modelled 7.5 16
PDB header:hydrolase
Chain: D: PDB Molecule:haloacid dehalogenase;
PDBTitle: crystal structure of the defluorinating l-2-haloacid dehalogenase2 rha0230
54d2cupa1
not modelled 7.3 40
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
55c3cnyA_
not modelled 7.1 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol catabolism protein iole;
PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution
56c2qtxL_
not modelled 7.1 50
PDB header:rna binding protein
Chain: L: PDB Molecule:uncharacterized protein mj1435;
PDBTitle: crystal structure of an hfq-like protein from methanococcus jannaschii
57d1x63a1
not modelled 6.5 40
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
58d1wnaa1
not modelled 6.4 24
Fold:TTHA1528-like
Superfamily:TTHA1528-like
Family:TTHA1528-like
59c3be3A_
not modelled 6.3 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein belonging to pfam duf16532 from bordetella bronchiseptica
60c2kzvA_
not modelled 6.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a
61c2h6rG_
not modelled 6.1 19
PDB header:isomerase
Chain: G: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase (tim) from2 methanocaldococcus jannaschii
62d1nhkl_
not modelled 6.1 12
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
63d1hg3a_
not modelled 6.1 13
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
64c1zq1B_
not modelled 6.0 9
PDB header:lyase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
65c2cftA_
not modelled 5.9 17
PDB header:phosphatase
Chain: A: PDB Molecule:pyridoxal phosphate phosphatase;
PDBTitle: crystal structure of human pyridoxal 5'-phosphate2 phosphatase with its substrate
66c2h90A_
not modelled 5.8 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
67c3cnhA_
not modelled 5.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase family protein;
PDBTitle: crystal structure of predicted hydrolase of haloacid dehalogenase-like2 superfamily (np_295428.1) from deinococcus radiodurans at 1.66 a3 resolution
68c2locA_
not modelled 5.7 46
PDB header:toxin
Chain: A: PDB Molecule:mu-conotoxin buiiib;
PDBTitle: conotoxin analogue [d-ala2]buiiib
69c6adqP_
not modelled 5.7 43
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
70d1w5ra1
not modelled 5.5 18
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
71c3ju2A_
not modelled 5.5 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein smc04130;
PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021
72c2pr7A_
not modelled 5.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family;
PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution
73d1u7pa_
not modelled 5.4 16
Fold:HAD-like
Superfamily:HAD-like
Family:Magnesium-dependent phosphatase-1, Mdp1
74d1t5ia_
not modelled 5.2 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
75d2o2xa1
not modelled 5.2 13
Fold:HAD-like
Superfamily:HAD-like
Family:Histidinol phosphatase-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite