Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3190A_(RVBD3190A)_3556852_3557061
DateThu Aug 8 16:20:38 BST 2019
Unique Job ID19fc9499f6358a2e
SequenceMITVLDMNGF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.975 Y:16.842 Z:18.695
Model (left) based on template c5fimA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:ygau;
PDBTitle: the structure of kbp.k from e. coli
Confidence and coverage
Confidence: 24.7% Coverage: 32%
22 residues ( 32% of your sequence) have been modelled with 24.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5fimA_



24.7 14
PDB header:unknown function
Chain: A: PDB Molecule:ygau;
PDBTitle: the structure of kbp.k from e. coli
2d1y7ma2



24.5 20
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
3c2mkxA_



21.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: solution structure of lysm the peptidoglycan binding domain of2 autolysin atla from enterococcus faecalis
4c1ks9A_



20.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: ketopantoate reductase from escherichia coli
5d1ks9a1



18.7 19
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Ketopantoate reductase PanE
6d1e0ga_



16.3 40
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
7c4pqlB_



14.5 20
PDB header:dna binding protein
Chain: B: PDB Molecule:truncated replication protein repa;
PDBTitle: n-terminal domain of dna binding protein
8c2yonA_



14.3 50
PDB header:signaling protein
Chain: A: PDB Molecule:sensory box protein;
PDBTitle: solution nmr structure of the c-terminal extension of two bacterial2 light, oxygen, voltage (lov) photoreceptor proteins from3 pseudomonas putida
9c3no7A_



13.8 53
PDB header:dna binding protein
Chain: A: PDB Molecule:putative plasmid related protein;
PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100
10c5zhcA_



12.4 30
PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the padr-family transcriptional regulator rv34882 of mycobacterium tuberculosis h37rv
11d2ev0a1



12.4 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
12c3k96B_



12.3 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+];
PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii
13c5ocdD_



12.0 29
PDB header:rna binding protein
Chain: D: PDB Molecule:cyclodipeptide synthase;
PDBTitle: structure of a cdps from fluoribacter dumoffii
14c5nbcD_



10.6 22
PDB header:dna binding protein
Chain: D: PDB Molecule:ferric uptake regulation protein;
PDBTitle: structure of prokaryotic transcription factors
15c2djpA_



10.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein sb145;
PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145
16d2nrac1



10.2 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Replication initiation protein
17d1fipa_



10.1 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
18c4b3nA_



10.1 29
PDB header:sugar binding protein/ligase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, tripartite motif-
PDBTitle: crystal structure of rhesus trim5alpha pry/spry domain
19c4pxvC_



10.1 20
PDB header:sugar binding protein
Chain: C: PDB Molecule:chitinase a;
PDBTitle: crystal structure of lysm domain from pteris ryukyuensis chitinase a
20c6hu9e_



9.8 23
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
21d1g3wa1



not modelled 9.7 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
22d1dj0a_



not modelled 9.6 21
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase I TruA
23c5k2lA_



not modelled 9.3 50
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase, lysozyme;
PDBTitle: crystal structure of lysm domain from volvox carteri chitinase
24c5l9wb_



not modelled 9.2 58
PDB header:ligase
Chain: B: PDB Molecule:acetophenone carboxylase gamma subunit;
PDBTitle: crystal structure of the apc core complex
25d2itba1



not modelled 9.2 19
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:MiaE-like
26c5bumA_



not modelled 8.5 40
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of lysm domain from equisetum arvense chitinase a
27c3bjqA_



not modelled 8.4 35
PDB header:viral protein
Chain: A: PDB Molecule:phage-related protein;
PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution
28c5l9wB_



not modelled 8.4 67
PDB header:ligase
Chain: B: PDB Molecule:acetophenone carboxylase gamma subunit;
PDBTitle: crystal structure of the apc core complex
29d2isya1



not modelled 7.8 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
30d1q6za2



not modelled 7.8 31
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
31d1v9pa3



not modelled 7.7 25
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
32d1mzba_



not modelled 7.4 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FUR-like
33c1jpxA_



not modelled 7.1 24
PDB header:viral protein
Chain: A: PDB Molecule:gp41 envelope protein;
PDBTitle: mutation that destabilize the gp41 core: determinants for stabilizing2 the siv/cpmac envelope glycoprotein complex. wild type.
34c4p96B_



not modelled 6.9 21
PDB header:transcription
Chain: B: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from vibrio cholerae
35c2l9yA_



not modelled 6.4 30
PDB header:sugar binding protein
Chain: A: PDB Molecule:cvnh-lysm lectin;
PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307)
36c1hsjA_



not modelled 6.2 26
PDB header:transcription/sugar binding protein
Chain: A: PDB Molecule:fusion protein consisting of staphylococcus accessory
PDBTitle: sarr mbp fusion structure
37d3lada3



not modelled 6.1 27
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
38c5fgmA_



not modelled 5.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigr;
PDBTitle: streptomyces coelicolor sigr region 4
39d1w7pd1



not modelled 5.8 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
40c3g17H_



not modelled 5.7 17
PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:similar to 2-dehydropantoate 2-reductase;
PDBTitle: structure of putative 2-dehydropantoate 2-reductase from2 staphylococcus aureus
41c6dlcB_



not modelled 5.7 43
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein dhd1:234_b;
PDBTitle: designed protein dhd1:234_a, designed protein dhd1:234_b
42c4bryB_



not modelled 5.7 35
PDB header:cell cycle
Chain: B: PDB Molecule:multicilin;
PDBTitle: the idas:geminin heterodimeric parallel coiled-coil
43c2kelB_



not modelled 5.6 50
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
44c4uz2D_



not modelled 5.4 30
PDB header:hydrolase
Chain: D: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the n-terminal lysm domains from the putative2 nlpc/p60 d,l endopeptidase from t. thermophilus
45c3f10A_



not modelled 5.4 8
PDB header:hydrolase, lyase
Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase;
PDBTitle: crystal structure of clostridium acetobutylicum 8-oxoguanine dna2 glycosylase in complex with 8-oxoguanosine
46c3mwmA_



not modelled 5.3 17
PDB header:transcription
Chain: A: PDB Molecule:putative metal uptake regulation protein;
PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur

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