Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3190c_(-)_3555419_3556684
DateThu Aug 8 16:20:38 BST 2019
Unique Job IDe27dd9017ff0c648
SequenceVEYVQLFSKG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.915 Y:29.980 Z:32.421
Model (left) based on template c2vldA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease nucs;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus abyssi
Confidence and coverage
Confidence: 88.0% Coverage: 16%
67 residues ( 16% of your sequence) have been modelled with 88.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2vldA_
88.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease nucs;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus abyssi
2c5gkeB_
85.5 23
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
3c6hz9N_
79.8 27
PDB header:dna binding protein
Chain: N: PDB Molecule:protein mcrc;
PDBTitle: structure of mcrbc without dna binding domains (class 5)
4d1y88a2
64.4 15
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:MRR-like
5d1xmxa_
58.8 30
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hypothetical protein VC1899
6c5a08A_
55.9 29
PDB header:transferase
Chain: A: PDB Molecule:probable mannosyltransferase ktr4;
PDBTitle: x-ray structure of the mannosyltransferase ktr4p from s. cerevisiae
7c1s4pA_
55.4 23
PDB header:transferase
Chain: A: PDB Molecule:glycolipid 2-alpha-mannosyltransferase;
PDBTitle: crystal structure of yeast alpha1,2-mannosyltransferase kre2p/mnt1p:2 ternary complex with gdp/mn and methyl-alpha-mannoside acceptor
8c1y88A_
54.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1548;
PDBTitle: crystal structure of protein of unknown function af1548
9c5xauD_
48.4 15
PDB header:cell adhesion
Chain: D: PDB Molecule:laminin subunit alpha-5;
PDBTitle: crystal structure of integrin binding fragment of laminin-511
10c3hxlA_
48.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein dsy3957;
PDBTitle: crystal structure of the sheath tail protein (dsy3957) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr18
11d1s4na_
46.5 14
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycolipid 2-alpha-mannosyltransferase
12c2ch0A_
38.0 18
PDB header:nuclear protein
Chain: A: PDB Molecule:inner nuclear membrane protein man1;
PDBTitle: solution structure of the human man1 c-terminal domain (residues 655-2 775)
13c5t86A_
31.2 32
PDB header:toxin
Chain: A: PDB Molecule:cdia toxin;
PDBTitle: crystal structure of cdi complex from e. coli a0 34/86
14c3h1tA_
30.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:type i site-specific restriction-modification
PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016
15c3gybB_
29.4 16
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulators (laci-family
PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum
16c4ic1D_
29.1 24
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of sso0001
17c6gsiK_
26.3 20
PDB header:virus
Chain: K: PDB Molecule:vp2;
PDBTitle: feline calicivirus strain f9 bound to a soluble ectodomain fragment of2 feline junctional adhesion molecule a - leading to assembly of a3 portal structure at a unique three-fold axis.
18c6gsiI_
26.3 20
PDB header:virus
Chain: I: PDB Molecule:vp2;
PDBTitle: feline calicivirus strain f9 bound to a soluble ectodomain fragment of2 feline junctional adhesion molecule a - leading to assembly of a3 portal structure at a unique three-fold axis.
19c6emlr_
26.2 24
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s2;
PDBTitle: cryo-em structure of a late pre-40s ribosomal subunit from2 saccharomyces cerevisiae
20c3q66C_
25.5 27
PDB header:chaperone/transferase
Chain: C: PDB Molecule:histone acetyltransferase rtt109;
PDBTitle: structure of the vps75-rtt109 histone chaperone-lysine2 acetyltransferase complex (full-length proteins in space group p6122)
21c2jqqA_
not modelled 24.1 6
PDB header:protein transport
Chain: A: PDB Molecule:conserved oligomeric golgi complex subunit 2;
PDBTitle: solution structure of saccharomyces cerevisiae conserved2 oligomeric golgi subunit 2 protein (cog2p)
22c5w1hA_
not modelled 23.0 18
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:lbacas13a (c2c2);
PDBTitle: crystal structure of lbacas13a (c2c2) bound to mature crrna (24-nt2 spacer)
23c5mc9A_
not modelled 22.6 15
PDB header:cell adhesion
Chain: A: PDB Molecule:laminin subunit alpha-1;
PDBTitle: crystal structure of the heterotrimeric integrin-binding region of2 laminin-111
24c4d8jD_
not modelled 20.8 23
PDB header:dna binding protein
Chain: D: PDB Molecule:macrodomain ter protein;
PDBTitle: structure of e. coli matp-mats complex
25c5nv3P_
not modelled 20.0 15
PDB header:lyase
Chain: P: PDB Molecule:ribulose bisphosphate carboxylase small chain 1;
PDBTitle: structure of rubisco from rhodobacter sphaeroides in complex with cabp
26d1bxni_
not modelled 18.7 20
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
27c3eukC_
not modelled 17.7 8
PDB header:cell cycle
Chain: C: PDB Molecule:chromosome partition protein mukb, linker;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head domain)-2 atpgammas complex, asymmetric dimer
28d1uzhc1
not modelled 17.4 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
29d1gefa_
not modelled 17.3 17
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hjc-like
30d1rbli_
not modelled 17.0 15
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
31c6h3cC_
not modelled 16.5 12
PDB header:signaling protein
Chain: C: PDB Molecule:brisc and brca1-a complex member 2;
PDBTitle: cryo-em structure of the brisc complex bound to shmt2
32c1mhmA_
not modelled 16.3 6
PDB header:lyase
Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase;
PDBTitle: crystal structure of s-adenosylmethionine decarboxylase2 from potato
33c6jx3B_
not modelled 16.1 28
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
34c6cb6A_
not modelled 15.8 31
PDB header:viral protein
Chain: A: PDB Molecule:protein a6;
PDBTitle: crystal structure of vaccinia virus a6 n-terminus (space group c2)
35d1jl0a_
not modelled 15.4 13
Fold:S-adenosylmethionine decarboxylase
Superfamily:S-adenosylmethionine decarboxylase
Family:S-adenosylmethionine decarboxylase
36c2c5iT_
not modelled 15.3 10
PDB header:protein transport
Chain: T: PDB Molecule:t-snare affecting a late golgi compartment
PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation
37c2zfnA_
not modelled 15.2 27
PDB header:transferase
Chain: A: PDB Molecule:regulator of ty1 transposition protein 109;
PDBTitle: self-acetylation mediated histone h3 lysine 56 acetylation by rtt109
38d2j01d2
not modelled 15.1 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
39d1ir1s_
not modelled 15.1 30
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
40c2ybvN_
not modelled 15.0 20
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
41c3rlcA_
not modelled 15.0 54
PDB header:structural protein
Chain: A: PDB Molecule:a1 protein;
PDBTitle: crystal structure of the read-through domain from bacteriophage qbeta2 a1 protein, hexagonal crystal form
42c4eyyQ_
not modelled 14.7 25
PDB header:protein binding
Chain: Q: PDB Molecule:icmq;
PDBTitle: crystal structure of the icmr-icmq complex from legionella pneumophila
43c6mr1A_
not modelled 14.7 17
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein;
PDBTitle: rbcs-like subdomain of ccmm
44d1svdm1
not modelled 14.6 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
45c5d3aA_
not modelled 14.4 6
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein kif21a;
PDBTitle: kif21a regulatory coiled coil
46c6ah3D_
not modelled 14.0 15
PDB header:hydrolase/rna
Chain: D: PDB Molecule:rnases mrp/p 32.9 kda subunit;
PDBTitle: cryo-em structure of yeast ribonuclease p with pre-trna substrate
47d1ywka1
not modelled 13.9 30
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
48d1bwvs_
not modelled 13.7 15
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
49c3d35A_
not modelled 13.5 27
PDB header:transferase
Chain: A: PDB Molecule:regulator of ty1 transposition protein 109;
PDBTitle: crystal structure of rtt109-ac-coa complex
50c5mz2I_
not modelled 13.1 16
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
51d1xoya_
not modelled 12.9 21
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Hypothetical protein AT3g04780/F7O18 27
52c2hayD_
not modelled 12.8 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase;
PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas
53c1ywkE_
not modelled 12.7 30
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
54c5v1uB_
not modelled 12.7 20
PDB header:protein binding
Chain: B: PDB Molecule:tbib1;
PDBTitle: tbib1 in complex with the tbia(beta) leader peptide
55d2g8la1
not modelled 12.6 18
Fold:AF1104-like
Superfamily:AF1104-like
Family:AF1104-like
56c2vkyB_
not modelled 12.3 20
PDB header:viral protein
Chain: B: PDB Molecule:tail protein, piigcn4;
PDBTitle: headbinding domain of phage p22 tailspike c-terminally fused to2 isoleucine zipper piigcn4 (chimera i)
57c1w59B_
not modelled 12.1 10
PDB header:cell division
Chain: B: PDB Molecule:cell division protein ftsz homolog 1;
PDBTitle: ftsz dimer, empty (m. jannaschii)
58c6hbbA_
not modelled 12.0 15
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein ccmm;
PDBTitle: crystal structure of the small subunit-like domain 1 of ccmm from2 synechococcus elongatus (strain pcc 7942)
59d2uubm1
not modelled 12.0 26
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
60c2wa0A_
not modelled 11.9 15
PDB header:immune system
Chain: A: PDB Molecule:melanoma-associated antigen 4;
PDBTitle: crystal structure of the human magea4
61c5us5B_
not modelled 11.9 44
PDB header:structural genomics
Chain: B: PDB Molecule:upf0297 protein ef_1202;
PDBTitle: solution structure of the ireb homodimer
62d1unda_
not modelled 11.7 17
Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
63c1wwyA_
not modelled 11.6 21
PDB header:apoptosis
Chain: A: PDB Molecule:thioredoxin-like protein 1;
PDBTitle: solution structure of the duf1000 domain of a thioredoxin-like protein2 1
64d1yu8x1
not modelled 11.5 25
Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
65c5h64b_
not modelled 11.5 36
PDB header:transferase
Chain: B: PDB Molecule:regulatory-associated protein of mtor;
PDBTitle: cryo-em structure of mtorc1
66c2wj0B_
not modelled 11.3 18
PDB header:hydrolase/dna
Chain: B: PDB Molecule:archaeal hjc;
PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate
67d1vsra_
not modelled 11.1 20
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
68c3e66B_
not modelled 11.1 16
PDB header:splicing
Chain: B: PDB Molecule:prp8;
PDBTitle: crystal structure of the beta-finger domain of yeast prp8
69c2eo0A_
not modelled 10.9 13
PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical protein st1444;
PDBTitle: crystal structure of holliday junction resolvase st1444
70c2qieB_
not modelled 10.8 13
PDB header:transferase
Chain: B: PDB Molecule:molybdopterin synthase small subunit;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex with precursor2 z
71c6h2jB_
not modelled 10.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:type i restriction enzyme r protein;
PDBTitle: crystal structure of the hsdr subunit of the ecor124i restriction2 enzyme with the c-terminal domain
72c4ui9E_
not modelled 10.6 33
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: atomic structure of the human anaphase-promoting complex
73c2w74B_
not modelled 10.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein;
PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp
74d1rl2a2
not modelled 10.4 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
75d1ejxc1
not modelled 10.4 26
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:alpha-Subunit of urease
76c6r7tB_
not modelled 10.2 26
PDB header:immune system
Chain: B: PDB Molecule:melanoma-associated antigen b1;
PDBTitle: crystal structure of human melanoma-associated antigen b1 (mageb1) in2 complex with nanobody
77c2kjwA_
not modelled 10.2 8
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: solution structure and backbone dynamics of the permutant p54-55
78c4rtbA_
not modelled 10.2 18
PDB header:lyase
Chain: A: PDB Molecule:hydg protein;
PDBTitle: x-ray structure of the fefe-hydrogenase maturase hydg from2 carboxydothermus hydrogenoformans
79c5sxyA_
not modelled 10.0 12
PDB header:chaperone
Chain: A: PDB Molecule:bifunctional coenzyme pqq synthesis protein c/d;
PDBTitle: the solution nmr structure for the pqqd truncation of methylobacterium2 extorquens pqqcd representing a functional and stand-alone3 ribosomally synthesized and post-translational modified (ripp)4 recognition element (rre)
80c2kw0A_
not modelled 9.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
81c2w9yA_
not modelled 9.7 10
PDB header:lipid transport
Chain: A: PDB Molecule:fatty acid/retinol binding protein protein 7,
PDBTitle: the structure of the lipid binding protein ce-far-7 from2 caenorhabditis elegans
82d1vqoa2
not modelled 9.6 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
83c3cz7A_
not modelled 9.5 27
PDB header:replication
Chain: A: PDB Molecule:regulator of ty1 transposition protein 109;
PDBTitle: molecular basis for the autoregulation of the protein acetyl2 transferase rtt109
84c2w00B_
not modelled 9.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:hsdr;
PDBTitle: crystal structure of the hsdr subunit of the ecor124i restriction2 enzyme in complex with atp
85d1unca_
not modelled 9.4 25
Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
86c6jbzD_
not modelled 9.2 13
PDB header:transferase
Chain: D: PDB Molecule:moad/this family protein;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
87d5csma_
not modelled 9.2 25
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
88c5h7dI_
not modelled 9.2 11
PDB header:transferase, immune system/metal binding
Chain: I: PDB Molecule:putrescine aminotransferase,immunoglobulin g-binding
PDBTitle: crystal structure of the ygjg-protein a-zpa963-calmodulin complex
89c3g2bA_
not modelled 9.1 8
PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
90d2zkmx1
not modelled 9.0 11
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
91d1cfra_
not modelled 8.9 20
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Cfr10I/Bse634I
92c4wn5A_
not modelled 8.8 16
PDB header:transcription
Chain: A: PDB Molecule:hypoxia-inducible factor 3-alpha;
PDBTitle: crystal structure of the c-terminal per-arnt-sim (pasb) of human hif-2 3alpha9 bound to 18:1-1-monoacylglycerol
93c6nrc6_
not modelled 8.7 16
PDB header:chaperone
Chain: 6: PDB Molecule:prefoldin subunit 6;
PDBTitle: htric-hpfd class3
94c1u00A_
not modelled 8.7 18
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
95c1jp3A_
not modelled 8.7 17
PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase
96d1xrua1
not modelled 8.5 30
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
97c4r0rA_
not modelled 8.5 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:eboizn21;
PDBTitle: ebolavirus gp prehairpin intermediate mimic
98c4oq2A_
not modelled 8.5 6
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease pvurts1 i;
PDBTitle: 5hmc specific restriction endonuclease pvurts1i
99c3l9oA_
not modelled 8.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome

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