Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3195_(-)_3564361_3565779
DateThu Aug 8 16:20:38 BST 2019
Unique Job ID68499f1137153a78
SequenceVSTGEVMGDL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.846 Y:53.225 Z:53.243
Model (left) based on template c3cmnA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of a putative hydrolase with a novel fold2 from chloroflexus aurantiacus
Confidence and coverage
Confidence:100.0% Coverage: 62%
292 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3cmnA_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of a putative hydrolase with a novel fold2 from chloroflexus aurantiacus
2d3cmna1
100.0 23
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Caur0242-like
3d1nkzb_
61.1 36
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
4c4clvB_
54.7 16
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
5c4jiuA_
48.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:proabylysin;
PDBTitle: crystal structure of the metallopeptidase zymogen of pyrococcus abyssi2 abylysin
6c4jixB_
43.5 27
PDB header:hydrolase
Chain: B: PDB Molecule:projannalysin;
PDBTitle: crystal structure of the metallopeptidase zymogen of2 methanocaldococcus jannaschii jannalysin
7c3opwA_
37.4 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:dna damage-responsive transcriptional repressor rph1;
PDBTitle: crystal structure of the rph1 catalytic core
8c5a1fA_
34.6 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 5b, lysine-specific
PDBTitle: crystal structure of the catalytic domain of plu1 in complex with2 n-oxalylglycine.
9c2os2A_
31.5 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 3a;
PDBTitle: crystal structure of jmjd2a complexed with histone h3 peptide2 trimethylated at lys36
10c2q8eB_
30.0 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation protein 3a;
PDBTitle: specificity and mechanism of jmjd2a, a trimethyllysine-specific2 histone demethylase
11c5xbvA_
29.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:wss1p;
PDBTitle: crystal structure of wss1 mutant from saccharomyces cerevisiae
12c5yknA_
29.0 35
PDB header:gene regulation
Chain: A: PDB Molecule:probable lysine-specific demethylase jmj14;
PDBTitle: crystal structure of arabidopsis thaliana jmj14 catalytic domain
13d1kn1b_
26.9 12
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
14c6ip4A_
25.9 15
PDB header:gene regulation
Chain: A: PDB Molecule:arabidopsis jmj13;
PDBTitle: crystal structure of arabidopsis thaliana jmj13 catalytic domain in2 complex with nog and an h3k27me3 peptide
15d2cwla1
25.8 19
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Manganese catalase (T-catalase)
16c4yk3B_
25.2 20
PDB header:protein binding
Chain: B: PDB Molecule:bepe protein;
PDBTitle: crystal structure of the bid domain of bepe from bartonella henselae
17c5ldeB_
24.7 25
PDB header:viral protein
Chain: B: PDB Molecule:immunoglobulin g-binding protein g,viral flice protein;
PDBTitle: crystal structure of a vflip-ikkgamma stapled peptide dimer
18c5cehA_
23.7 32
PDB header:oxidoreductase/inhibitor
Chain: A: PDB Molecule:lysine-specific demethylase 5a;
PDBTitle: structure of histone lysine demethylase kdm5a in complex with2 selective inhibitor
19c6et5u_
23.5 29
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
20c4igpA_
22.1 20
PDB header:structural protein
Chain: A: PDB Molecule:os05g0196500 protein;
PDBTitle: histone h3 lysine 4 demethylating rice jmj703 apo enzyme
21d1e3oc2
not modelled 21.1 30
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
22d1jo5a_
not modelled 20.8 27
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
23d1ngka_
not modelled 20.8 9
Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
24d1allb_
not modelled 19.8 10
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
25c2p32B_
not modelled 19.8 15
PDB header:chaperone
Chain: B: PDB Molecule:heat shock 70 kda protein a;
PDBTitle: crystal structure of the c-terminal 10 kda subdomain from c. elegans2 hsp70
26d1lmla_
not modelled 19.8 30
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Leishmanolysin
27c3u1dA_
not modelled 19.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei.
28c6fqbE_
not modelled 19.3 21
PDB header:ligase
Chain: E: PDB Molecule:cobyric acid synthase;
PDBTitle: murt/gatd peptidoglycan amidotransferase complex from streptococcus2 pneumoniae r6
29d1a2za_
not modelled 18.9 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
30c3zdoC_
not modelled 18.8 28
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: tetramerization domain of measles virus phosphoprotein
31d1jkva_
not modelled 18.1 33
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Manganese catalase (T-catalase)
32c5mtwD_
not modelled 17.5 16
PDB header:chaperone
Chain: D: PDB Molecule:secb-like chaperone rv1957;
PDBTitle: mycobacterium tuberculosis rv1957 secb-like chaperone in complex with2 a chad peptide from rv1956 higa1 antitoxin
33c4yk2B_
not modelled 17.4 12
PDB header:protein binding
Chain: B: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep9 from bartonella2 clarridgeiae
34c5z8qA_
not modelled 17.3 15
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein ssa1;
PDBTitle: solution structure of the sbdalpha domain of yeast ssa1
35c3bdnB_
not modelled 17.3 14
PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
36c3eusB_
not modelled 16.8 24
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
37d1b33b_
not modelled 16.6 10
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
38c1mqrA_
not modelled 16.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-d-glucuronidase;
PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6
39d1au7a2
not modelled 15.8 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
40d1l8na1
not modelled 15.1 30
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
41c6g7cF_
not modelled 14.7 16
PDB header:transport protein
Chain: F: PDB Molecule:impa-related domain protein;
PDBTitle: nt2-ctd domains of the tssa component from the type vi secretion2 system of aeromonas hydrophila.
42c3qyxD_
not modelled 13.0 16
PDB header:transcription/dna
Chain: D: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of mycobacterium tuberculosis espr in complex with a2 small dna fragment
43c3cqxD_
not modelled 12.9 44
PDB header:chaperone
Chain: D: PDB Molecule:bag family molecular chaperone regulator 2;
PDBTitle: chaperone complex
44d1iofa_
not modelled 12.4 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
45c2kvrA_
not modelled 12.3 20
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7;
PDBTitle: solution nmr structure of human ubiquitin specific protease usp7 ubl2 domain (residues 537-664). nesg target hr4395c/ sgc-toronto
46c4ng7A_
not modelled 12.2 16
PDB header:transport protein
Chain: A: PDB Molecule:trap periplasmic solute binding protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 citrobacter koseri (cko_04899), target efi-510094, apo, open3 structure
47d2ce7a1
not modelled 12.2 25
Fold:FtsH protease domain-like
Superfamily:FtsH protease domain-like
Family:FtsH protease domain-like
48c2da4A_
not modelled 11.9 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156;
PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156
49c4ivvA_
not modelled 11.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: catalytic amidase domain of the major autolysin lyta from2 streptococcus pneumaniae
50d2di4a1
not modelled 11.8 25
Fold:FtsH protease domain-like
Superfamily:FtsH protease domain-like
Family:FtsH protease domain-like
51c4yk1A_
not modelled 11.7 14
PDB header:protein binding
Chain: A: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep6 from bartonella rochalimae
52c2di4B_
not modelled 11.7 25
PDB header:hydrolase
Chain: B: PDB Molecule:cell division protein ftsh homolog;
PDBTitle: crystal structure of the ftsh protease domain
53c1cqxB_
not modelled 11.0 22
PDB header:lipid binding protein
Chain: B: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution
54c3qzcA_
not modelled 11.0 13
PDB header:signaling protein
Chain: A: PDB Molecule:periplasmic protein cpxp;
PDBTitle: structure of the periplasmic stress response protein cpxp
55c4b24A_
not modelled 10.8 10
PDB header:hydrolase/dna
Chain: A: PDB Molecule:probable dna-3-methyladenine glycosylase 2;
PDBTitle: unprecedented sculpting of dna at abasic sites by dna glycoslase2 homolog mag2
56c3pvpA_
not modelled 10.3 14
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna
57c1sazA_
not modelled 10.0 19
PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
58d1xg0c_
not modelled 9.9 10
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
59c2vmlA_
not modelled 9.9 6
PDB header:photosynthesis
Chain: A: PDB Molecule:phycocyanin alpha chain;
PDBTitle: the monoclinic structure of phycocyanin from gloeobacter violaceus
60c6nu9A_
not modelled 9.6 32
PDB header:viral protein
Chain: A: PDB Molecule:zinc-binding non-structural protein;
PDBTitle: crystal structure of a zinc-binding non-structural protein from the2 hepatitis e virus
61c3c37B_
not modelled 9.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase, m48 family;
PDBTitle: x-ray structure of the putative zn-dependent peptidase q74d82 at the2 resolution 1.7 a. northeast structural genomics consortium target3 gsr143a
62c4pyzA_
not modelled 9.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7;
PDBTitle: crystal structure of the first two ubl domains of deubiquitylase usp7
63c3f6wE_
not modelled 9.2 23
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
64d1oqya2
not modelled 9.2 50
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
65c4nfuB_
not modelled 8.7 9
PDB header:signaling protein
Chain: B: PDB Molecule:senescence-associated carboxylesterase 101;
PDBTitle: structure of the central plant immunity signaling node eds1 in complex2 with its interaction partner sag101
66c2xsdC_
not modelled 8.6 14
PDB header:transcription/dna
Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1;
PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna
67c6mdxA_
not modelled 8.6 26
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:sprt-like domain-containing protein spartan;
PDBTitle: mechanism of protease dependent dpc repair
68c3ckkA_
not modelled 8.5 11
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of human methyltransferase-like protein 1
69c2vqxA_
not modelled 8.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:metalloproteinase;
PDBTitle: precursor of protealysin, metalloproteinase from serratia2 proteamaculans.
70d2fp1a1
not modelled 8.4 13
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Secreted chorismate mutase-like
71c6eyyB_
not modelled 8.0 27
PDB header:viral protein
Chain: B: PDB Molecule:acriia6;
PDBTitle: anti-crispr acriia6 cubic form
72d1ud0a_
not modelled 7.9 16
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
73d1eyxb_
not modelled 7.9 12
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
74c4r42B_
not modelled 7.7 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:alr3090 protein;
PDBTitle: crystal structure of katb, a manganese catalase from anabaena pcc7120
75c4pdnA_
not modelled 7.7 43
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of e. coli yfcm
76c3lofF_
not modelled 7.7 20
PDB header:chaperone
Chain: F: PDB Molecule:heat shock 70 kda protein 1;
PDBTitle: c-terminal domain of human heat shock 70kda protein 1b.
77c1au7B_
not modelled 7.6 14
PDB header:transcription/dna
Chain: B: PDB Molecule:protein pit-1;
PDBTitle: pit-1 mutant/dna complex
78d1rioa_
not modelled 7.6 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
79d2o8ia1
not modelled 7.5 29
Fold:UraD-like
Superfamily:UraD-Like
Family:UraD-like
80d1yuza1
not modelled 7.5 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
81d1alla_
not modelled 7.4 9
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
82c3ee4A_
not modelled 7.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase;
PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis
83d1lmb3_
not modelled 7.2 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
84d1llib_
not modelled 7.0 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
85c3b4rA_
not modelled 6.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative zinc metalloprotease mj0392;
PDBTitle: site-2 protease from methanocaldococcus jannaschii
86c3va9A_
not modelled 6.8 16
PDB header:transferase
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: crystal structure of the rhodopseudomonas palustris histidine kinase2 hk9 sensor domain
87c3giuA_
not modelled 6.8 26
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: 1.25 angstrom crystal structure of pyrrolidone-carboxylate peptidase2 (pcp) from staphylococcus aureus
88c1hf0A_
not modelled 6.7 18
PDB header:transcription
Chain: A: PDB Molecule:octamer-binding transcription factor 1;
PDBTitle: crystal structure of the dna-binding domain of oct-1 bound to dna as a2 dimer
89d1wh5a_
not modelled 6.7 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
90d1phna_
not modelled 6.7 10
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
91c5i44E_
not modelled 6.6 11
PDB header:dna binding protein/dna
Chain: E: PDB Molecule:chromosome-anchoring protein raca;
PDBTitle: structure of raca-dna complex; p21 form
92d1rp3a1
not modelled 6.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
93c2x7lP_
not modelled 6.6 22
PDB header:immune system
Chain: P: PDB Molecule:protein rev;
PDBTitle: implications of the hiv-1 rev dimer structure at 3.2a resolution for2 multimeric binding to the rev response element
94c2rn7A_
not modelled 6.6 11
PDB header:unknown function
Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
95c2qsfX_
not modelled 6.5 26
PDB header:dna binding protein
Chain: X: PDB Molecule:uv excision repair protein rad23;
PDBTitle: crystal structure of the rad4-rad23 complex
96c1l0oC_
not modelled 6.5 14
PDB header:protein binding
Chain: C: PDB Molecule:sigma factor;
PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
97d1l0oc_
not modelled 6.5 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
98d1q5na_
not modelled 6.4 16
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
99c5vf3O_
not modelled 6.4 31
PDB header:virus
Chain: O: PDB Molecule:small outer capsid protein;
PDBTitle: bacteriophage t4 isometric capsid

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