Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3196A_(-)_3566693_3566893
DateThu Aug 8 16:20:39 BST 2019
Unique Job ID6eb900d4534401e8
SequenceVQEGGPQETM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.770 Y:33.262 Z:37.210
Model (left) based on template c6dkmB_
Top template information
PDB header:de novo protein
Chain: B: PDB Molecule:dhd131_b;
PDBTitle: dhd131
Confidence and coverage
Confidence: 31.9% Coverage: 55%
36 residues ( 55% of your sequence) have been modelled with 31.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6dkmB_



31.9 33
PDB header:de novo protein
Chain: B: PDB Molecule:dhd131_b;
PDBTitle: dhd131
2d2juza1



24.9 26
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
3c3h6pD_



18.1 58
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:esat-6-like protein esxr;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
4c6c23C_



16.3 23
PDB header:gene regulation
Chain: C: PDB Molecule:histone-lysine n-methyltransferase ezh2;
PDBTitle: cryo-em structure of prc2 bound to cofactors aebp2 and jarid2 in the2 compact active state
5c6fc3B_



16.2 60
PDB header:translation
Chain: B: PDB Molecule:cap-associated protein caf20;
PDBTitle: crystal structure of the eif4e-p20 complex from saccharomyces2 cerevisiae
6c5ocdD_



16.2 23
PDB header:rna binding protein
Chain: D: PDB Molecule:cyclodipeptide synthase;
PDBTitle: structure of a cdps from fluoribacter dumoffii
7d2qtia1



15.2 24
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
8d2jrxa1



13.1 21
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
9d1jjcb2



13.0 37
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
10d1k3xa1



12.5 26
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
11c1h4uA_



11.8 55
PDB header:extracellular matrix protein
Chain: A: PDB Molecule:nidogen-1;
PDBTitle: domain g2 of mouse nidogen-1
12d2juwa1



11.6 21
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
13c4cs6A_



11.4 30
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside adenyltransferase;
PDBTitle: crystal structure of aada - an aminoglycoside adenyltransferase
14c2o35A_



10.9 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
15d2o35a1



10.9 25
Fold:SMc04008-like
Superfamily:SMc04008-like
Family:SMc04008-like
16d2jpqa1



9.7 17
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
17c3mstA_



9.4 14
PDB header:transport protein
Chain: A: PDB Molecule:putative nitrate transport protein;
PDBTitle: crystal structure of a putative nitrate transport protein (tvn0104)2 from thermoplasma volcanium at 1.35 a resolution
18d1gxha_



9.1 21
Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
19c3byaB_



9.0 47
PDB header:metal binding protein
Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1 peptide;
PDBTitle: structure of a calmodulin complex
20c2hqwB_



8.6 47
PDB header:metal binding protein
Chain: B: PDB Molecule:glutamate nmda receptor subunit zeta 1;
PDBTitle: crystal structure of ca2+/calmodulin bound to nmda receptor nr1c12 peptide
21d1k82a1



not modelled 8.5 29
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
22d1gl4a1



not modelled 8.1 55
Fold:GFP-like
Superfamily:GFP-like
Family:Domain G2 of nidogen-1
23c2opfA_



not modelled 7.8 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
24c2l9mA_



not modelled 7.5 24
PDB header:apoptosis inhibitor
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2;
PDBTitle: structure of ciap1 card
25c2rdcA_



not modelled 7.1 40
PDB header:lipid binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution
26c3dd7D_



not modelled 7.0 42
PDB header:ribosome inhibitor
Chain: D: PDB Molecule:prevent host death protein;
PDBTitle: structure of doch66y in complex with the c-terminal domain of phd
27c3a9fA_



not modelled 7.0 23
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the c-terminal domain of cytochrome cz from2 chlorobium tepidum
28c4jpdA_



not modelled 7.0 24
PDB header:metal binding protein
Chain: A: PDB Molecule:protein cyay;
PDBTitle: the structure of cyay from burkholderia cenocepacia
29c4yxpA_



not modelled 6.5 44
PDB header:viral protein
Chain: A: PDB Molecule:mrna export factor;
PDBTitle: the structure of the folded domain of the signature multifunctional2 protein icp27 from herpes simplex virus-1 reveals an intertwined3 dimer.
30d2otaa1



not modelled 6.3 20
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
31d2ga5a1



not modelled 6.2 24
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
32c5tcmA_



not modelled 5.9 29
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: first bromodomain from leishmania donovani ldbpk.091320 complexed with2 bi-2536
33c3q4hB_



not modelled 5.9 38
PDB header:metal transport
Chain: B: PDB Molecule:low molecular weight protein antigen 7;
PDBTitle: crystal structure of the mycobacterium smegmatis esxgh complex2 (msmeg_0620-msmeg_0621)
34c1xkmA_



not modelled 5.9 60
PDB header:antibiotic
Chain: A: PDB Molecule:distinctin chain a;
PDBTitle: nmr structure of antimicrobial peptide distinctin in water
35c1xkmC_



not modelled 5.9 60
PDB header:antibiotic
Chain: C: PDB Molecule:distinctin chain a;
PDBTitle: nmr structure of antimicrobial peptide distinctin in water
36d1r2za1



not modelled 5.6 24
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
37d1w8ia_



not modelled 5.6 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
38d1ayia_



not modelled 5.5 27
Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
39c2lklA_



not modelled 5.4 50
PDB header:cell adhesion
Chain: A: PDB Molecule:erythrocyte membrane protein 1 (pfemp1);
PDBTitle: structure of the core intracellular domain of pfemp1
40c6fddC_



not modelled 5.2 32
PDB header:structural protein
Chain: C: PDB Molecule:whirlin;
PDBTitle: crystal structure of the hhd2 domain of whirlin
41c2kmgA_



not modelled 5.1 50
PDB header:gene regulation
Chain: A: PDB Molecule:klca;
PDBTitle: the structure of the klca and ardb proteins show a novel2 fold and antirestriction activity against type i dna3 restriction systems in vivo but not in vitro

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