Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3197A_(whiB7)_3568398_3568676
DateThu Aug 8 16:20:39 BST 2019
Unique Job IDb144ad6a17050319
SequenceVSVLTVPRQT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.948 Y:27.671 Z:38.162
Model (left) based on template c5oayA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
Confidence and coverage
Confidence: 99.9% Coverage: 73%
67 residues ( 73% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5oayA_



99.9 31
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
2c4unfA_



46.3 39
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
3c1rrqA_



42.2 27
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
4d2f62a1



22.7 14
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:N-deoxyribosyltransferase
5d1rrqa1



21.9 38
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
6c3saeA_



19.8 28
PDB header:lyase
Chain: A: PDB Molecule:alpha-bisabolene synthase;
PDBTitle: structure of a three-domain sesquiterpene synthase: a prospective2 target for advanced biofuels production
7c4uobA_



18.8 38
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
8c3pybB_



18.7 18
PDB header:isomerase
Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
9d1orna_



18.1 38
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
10d1kg2a_



17.0 50
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
11d1keaa_



16.3 23
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
12c3p5rB_



15.5 28
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
13c6dx2A_



14.7 21
PDB header:hydrolase, protein binding
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from dera ghazi2 khan virus
14c3s9vD_



14.0 28
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
15c3n5nX_



11.2 38
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
16c4fdxB_



10.7 18
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
17d1i8ya_



10.2 80
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat
18c1i8yA_



10.2 80
PDB header:cytokine
Chain: A: PDB Molecule:granulin-1;
PDBTitle: semi-automatic structure determination of the cg1 3-302 peptide based on aria
19c5fj9P_



9.7 0
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a
20c3gycB_



9.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
21c6f40P_



not modelled 9.6 0
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: rna polymerase iii open complex
22d1fltx_



not modelled 9.5 43
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
23c4bozA_



not modelled 9.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin thioesterase otu1;
PDBTitle: structure of otud2 otu domain in complex with k11-linked di ubiquitin
24c3c0rC_



not modelled 8.2 29
PDB header:cell cycle, hydrolase
Chain: C: PDB Molecule:ubiquitin thioesterase otu1;
PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin
25d2abka_



not modelled 8.1 50
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
26c2ru1A_



not modelled 6.6 67
PDB header:hormone
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of esf3
27c3m20A_



not modelled 6.2 38
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
28c3ry0A_



not modelled 6.0 33
PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
29c5cw6A_



not modelled 5.5 23
PDB header:metal binding protein
Chain: A: PDB Molecule:drbrcc36;
PDBTitle: structure of metal dependent enzyme drbrcc36
30c2mvmA_



not modelled 5.5 29
PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-delta;
PDBTitle: solution structure of eef1bdelta car domain
31c2mvnA_



not modelled 5.5 29
PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-delta;
PDBTitle: solution structure of eef1bdelta car domain in tctp-bound state
32c6dx1A_



not modelled 5.4 25
PDB header:hydrolase, protein binding
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from qalyub virus

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