1 c4g0dD_
98.0
17
PDB header: hydrolaseChain: D: PDB Molecule: collagenase 3;PDBTitle: human collagenase 3 (mmp-13) full form with peptides from pro-domain
2 d1hv5a_
97.9
18
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
3 d2ovxa1
97.9
16
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
4 c1slmA_
97.8
22
PDB header: hydrolaseChain: A: PDB Molecule: stromelysin-1;PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme
5 d1y93a1
97.7
16
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
6 d1mmqa_
97.7
19
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
7 d1xuca1
97.7
17
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
8 d1hy7a_
97.7
20
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
9 d1hfca_
97.7
17
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
10 d1g9ka2
97.7
18
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Serralysin-like metalloprotease, catalytic (N-terminal) domain
11 d1sata2
97.7
18
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Serralysin-like metalloprotease, catalytic (N-terminal) domain
12 d1cxva_
97.7
18
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
13 c2cltB_
97.6
18
PDB header: hydrolaseChain: B: PDB Molecule: interstitial collagenase;PDBTitle: crystal structure of the active form (full-length) of human2 fibroblast collagenase.
14 d1hova_
97.6
17
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
15 c3ba0A_
97.6
17
PDB header: hydrolaseChain: A: PDB Molecule: macrophage metalloelastase;PDBTitle: crystal structure of full-length human mmp-12
16 d1cgla_
97.6
19
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
17 d1k7ia2
97.6
15
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Serralysin-like metalloprotease, catalytic (N-terminal) domain
18 c2xs4A_
97.6
14
PDB header: hydrolaseChain: A: PDB Molecule: karilysin protease;PDBTitle: structure of karilysin catalytic mmp domain in complex with magnesium
19 d1q3aa_
97.6
21
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
20 c5th6D_
97.6
19
PDB header: hydrolase/hydrolase inhibitorChain: D: PDB Molecule: matrix metalloproteinase-9,matrix metalloproteinase-9;PDBTitle: structure determination of a potent, selective antibody inhibitor of2 human mmp9 (apo mmp9)
21 c2jsdA_
not modelled
97.5
23
PDB header: hydrolaseChain: A: PDB Molecule: matrix metalloproteinase-20;PDBTitle: solution structure of mmp20 complexed with nngh
22 d1fbla2
not modelled
97.5
17
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
23 d1qiba_
not modelled
97.5
20
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
24 c2mzeA_
not modelled
97.4
18
PDB header: hydrolaseChain: A: PDB Molecule: matrilysin;PDBTitle: nmr solution structure of the pro form of human matrilysin (prommp-7)
25 d1i76a_
not modelled
97.4
17
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
26 c5czwA_
not modelled
97.1
19
PDB header: hydrolaseChain: A: PDB Molecule: myroilysin;PDBTitle: crystal structure of myroilysin
27 c1su3A_
not modelled
97.0
20
PDB header: hydrolaseChain: A: PDB Molecule: interstitial collagenase;PDBTitle: x-ray structure of human prommp-1: new insights into2 collagenase action
28 d1eaka2
not modelled
97.0
21
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
29 d1kapp2
not modelled
97.0
19
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Serralysin-like metalloprotease, catalytic (N-terminal) domain
30 d1rm8a_
not modelled
96.8
20
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
31 d1bqqm_
not modelled
96.7
18
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Matrix metalloproteases, catalytic domain
32 c1satA_
not modelled
96.6
17
PDB header: hydrolase (serine protease)Chain: A: PDB Molecule: serratia protease;PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens
33 c1jiwP_
not modelled
96.3
17
PDB header: hydrolase/hyrolase inhibitorChain: P: PDB Molecule: alkaline metalloproteinase;PDBTitle: crystal structure of the apr-aprin complex
34 c1om8A_
not modelled
95.3
19
PDB header: hydrolaseChain: A: PDB Molecule: serralysin;PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta
35 c3edhA_
not modelled
94.1
15
PDB header: hydrolaseChain: A: PDB Molecule: bone morphogenetic protein 1;PDBTitle: crystal structure of bone morphogenetic protein 1 protease2 domain in complex with partially bound dmso
36 c3vtgA_
not modelled
91.7
21
PDB header: hydrolaseChain: A: PDB Molecule: high choriolytic enzyme 1;PDBTitle: high choriolytic enzyme 1 (hce-1), a hatching enzyme zinc-protease2 from oryzias latipes (medaka fish)
37 d1nd1a_
not modelled
91.1
24
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
38 d1r55a_
not modelled
90.9
19
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
39 c2erpA_
not modelled
90.7
21
PDB header: toxinChain: A: PDB Molecule: vascular apoptosis-inducing protein 1;PDBTitle: crystal structure of vascular apoptosis-inducing protein-1(inhibitor-2 bound form)
40 c3k7nA_
not modelled
90.7
23
PDB header: hydrolaseChain: A: PDB Molecule: k-like;PDBTitle: structures of two elapid snake venom metalloproteases with2 distinct activities highlight the disulfide patterns in the3 d domain of adamalysin family proteins
41 d1kufa_
not modelled
89.8
32
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
42 c1yp1A_
not modelled
89.8
28
PDB header: hydrolaseChain: A: PDB Molecule: fii;PDBTitle: crystal structure of a non-hemorrhagic fibrin(ogen)olytic2 metalloproteinase from venom of agkistrodon acutus
43 d1atla_
not modelled
88.7
22
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
44 d4aiga_
not modelled
88.5
26
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
45 c3lqbA_
not modelled
88.1
41
PDB header: hydrolaseChain: A: PDB Molecule: loc792177 protein;PDBTitle: crystal structure of the hatching enzyme zhe1 from the zebrafish danio2 rerio
46 d2i47a1
not modelled
88.1
33
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: TNF-alpha converting enzyme, TACE, catalytic domain
47 c2i47A_
not modelled
87.8
24
PDB header: hydrolaseChain: A: PDB Molecule: adam 17;PDBTitle: crystal structure of catalytic domain of tace with inhibitor
48 c4dd8B_
not modelled
87.3
17
PDB header: hydrolase/hydrolase inhibitorChain: B: PDB Molecule: disintegrin and metalloproteinase domain-containing proteinPDBTitle: adam-8 metalloproteinase domain with bound batimastat
49 d1asta_
not modelled
87.1
53
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Astacin
50 c2e3xA_
not modelled
85.9
24
PDB header: hydrolase, blood clotting, toxinChain: A: PDB Molecule: coagulation factor x-activating enzyme heavy chain;PDBTitle: crystal structure of russell's viper venom metalloproteinase
51 c3lq0A_
not modelled
85.9
40
PDB header: hydrolaseChain: A: PDB Molecule: proastacin;PDBTitle: zymogen structure of crayfish astacin metallopeptidase
52 c5zumB_
not modelled
85.7
13
PDB header: hydrolaseChain: B: PDB Molecule: dipeptidyl-peptidase iii;PDBTitle: structure of dipeptidyl-peptidase iii from corallococcus sp. strain2 egb
53 d1bswa_
not modelled
85.7
32
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
54 c3b8zB_
not modelled
85.7
36
PDB header: hydrolaseChain: B: PDB Molecule: protein adamts-5;PDBTitle: high resolution crystal structure of the catalytic domain of adamts-52 (aggrecanase-2)
55 d1wnia_
not modelled
85.1
26
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
56 c2j83B_
not modelled
84.4
55
PDB header: hydrolaseChain: B: PDB Molecule: ulilysin;PDBTitle: ulilysin metalloprotease in complex with batimastat.
57 c1gxdA_
not modelled
83.4
26
PDB header: hydrolaseChain: A: PDB Molecule: 72 kda type iv collagenase;PDBTitle: prommp-2/timp-2 complex
58 c2dw1B_
not modelled
82.0
23
PDB header: apoptosis, toxinChain: B: PDB Molecule: catrocollastatin;PDBTitle: crystal structure of vap2 from crotalus atrox venom (form 2-2 crystal)
59 c4gwmA_
not modelled
81.5
35
PDB header: hydrolaseChain: A: PDB Molecule: meprin a subunit beta;PDBTitle: crystal structure of human promeprin beta
60 c6be6D_
not modelled
81.5
29
PDB header: membrane proteinChain: D: PDB Molecule: disintegrin and metalloproteinase domain-containing proteinPDBTitle: adam10 extracellular domain
61 c2rjqA_
not modelled
81.2
35
PDB header: hydrolaseChain: A: PDB Molecule: adamts-5;PDBTitle: crystal structure of adamts5 with inhibitor bound
62 d1quaa_
not modelled
81.2
24
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Reprolysin-like
63 c3g5cA_
not modelled
79.3
20
PDB header: membrane proteinChain: A: PDB Molecule: adam 22;PDBTitle: structural and biochemical studies on the ectodomain of human adam22
64 c3k7lA_
not modelled
79.3
19
PDB header: hydrolaseChain: A: PDB Molecule: atragin;PDBTitle: structures of two elapid snake venom metalloproteases with2 distinct activities highlight the disulfide patterns in the3 d domain of adamalysin family proteins
65 c2v4bB_
not modelled
78.3
29
PDB header: hydrolaseChain: B: PDB Molecule: adamts-1;PDBTitle: crystal structure of human adamts-1 catalytic domain and cysteine-2 rich domain (apo-form)
66 c4gwnA_
not modelled
77.9
35
PDB header: hydrolaseChain: A: PDB Molecule: meprin a subunit beta;PDBTitle: crystal structure of human mature meprin beta
67 c3ujzA_
not modelled
77.8
50
PDB header: hydrolaseChain: A: PDB Molecule: metalloprotease stce;PDBTitle: crystal structure of enterohemorrhagic e. coli stce
68 c1l6jA_
not modelled
76.5
26
PDB header: hydrolaseChain: A: PDB Molecule: matrix metalloproteinase-9;PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b).
69 c3lmcA_
not modelled
76.3
24
PDB header: hydrolaseChain: A: PDB Molecule: peptidase, zinc-dependent;PDBTitle: crystal structure of zinc-dependent peptidase from methanocorpusculum2 labreanum (strain z), northeast structural genomics consortium target3 mur16
70 d1tvia_
not modelled
75.8
18
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Predicted metal-dependent hydrolase
71 c3p24C_
not modelled
75.1
33
PDB header: hydrolaseChain: C: PDB Molecule: bft-3;PDBTitle: structure of profragilysin-3 from bacteroides fragilis
72 c2rjpC_
not modelled
71.3
24
PDB header: hydrolaseChain: C: PDB Molecule: adamts-4;PDBTitle: crystal structure of adamts4 with inhibitor bound
73 c1xaxA_
not modelled
68.2
15
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: hypothetical upf0054 protein hi0004;PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae
74 c1eakA_
not modelled
67.7
40
PDB header: hydrolase/hydrolase inhibitorChain: A: PDB Molecule: 72 kda type iv collagenase;PDBTitle: catalytic domain of prommp-2 e404q mutant
75 c6eomA_
not modelled
64.9
20
PDB header: hydrolaseChain: A: PDB Molecule: mutt/nudix family protein;PDBTitle: structure of dpp iii from caldithrix abyssi
76 d1oz9a_
not modelled
62.0
18
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Predicted metal-dependent hydrolase
77 c4on1B_
not modelled
60.7
38
PDB header: hydrolaseChain: B: PDB Molecule: putative metalloprotease ii;PDBTitle: crystal structure of metalloproteinase-ii from bacteroides fragilis
78 c6o38A_
not modelled
58.2
73
PDB header: sugar binding proteinChain: A: PDB Molecule: acinetobacter secreted protease cpaa;PDBTitle: structure of a chaperone-substrate complex
79 d1c7ka_
not modelled
57.9
50
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Zinc protease
80 c3p1vB_
not modelled
57.2
47
PDB header: hydrolaseChain: B: PDB Molecule: metallo-endopeptidase;PDBTitle: crystal structure of a metallo-endopeptidases (bacova_00663) from2 bacteroides ovatus at 1.93 a resolution
81 d1xm5a_
not modelled
54.5
16
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Predicted metal-dependent hydrolase
82 c2xhqA_
not modelled
53.0
50
PDB header: hydrolaseChain: A: PDB Molecule: archaemetzincin;PDBTitle: crystal structure of archaemetzincin (amza) from archaeoglobus2 fulgidus at 1.45 a resolution
83 c2x7mA_
not modelled
50.6
50
PDB header: hydrolaseChain: A: PDB Molecule: archaemetzincin;PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution
84 c5yfcB_
not modelled
47.8
42
PDB header: hydrolaseChain: B: PDB Molecule: dipeptidyl peptidase 3;PDBTitle: crystal structure of a new dpp iii family member
85 c4k90A_
not modelled
45.1
16
PDB header: hydrolaseChain: A: PDB Molecule: extracellular metalloproteinase mep;PDBTitle: extracellular metalloproteinase from aspergillus
86 d1lmla_
not modelled
44.5
35
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Leishmanolysin
87 c4yu5A_
not modelled
38.6
45
PDB header: hydrolaseChain: A: PDB Molecule: immune inhibitor a, metalloprotease;PDBTitle: crystal structure of selenomethionine variant of bacillus anthracis2 immune inhibitor a2 peptidase zymogen
88 c4gerB_
not modelled
36.9
40
PDB header: hydrolaseChain: B: PDB Molecule: gentlyase metalloprotease;PDBTitle: crystal structure of gentlyase, the neutral metalloprotease of2 paenibacillus polymyxa
89 d1npca_
not modelled
36.4
60
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Thermolysin-like
90 c2vqxA_
not modelled
35.6
30
PDB header: hydrolaseChain: A: PDB Molecule: metalloproteinase;PDBTitle: precursor of protealysin, metalloproteinase from serratia2 proteamaculans.
91 d1kjpa_
not modelled
35.0
50
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Thermolysin-like
92 c3nctC_
not modelled
34.5
30
PDB header: dna binding protein, chaperoneChain: C: PDB Molecule: protein psib;PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
93 d1bqba_
not modelled
32.0
40
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Thermolysin-like
94 c3cskA_
not modelled
31.8
33
PDB header: hydrolaseChain: A: PDB Molecule: probable dipeptidyl-peptidase 3;PDBTitle: structure of dpp iii from saccharomyces cerevisiae
95 c3dtkA_
not modelled
30.1
31
PDB header: gene regulationChain: A: PDB Molecule: irre protein;PDBTitle: crystal structure of the irre protein, a central regulator2 of dna damage repair in deinococcaceae
96 d1u4ga_
not modelled
29.9
50
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: Thermolysin-like
97 c3ce2A_
not modelled
29.4
25
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: putative peptidase;PDBTitle: crystal structure of putative peptidase from chlamydophila abortus
98 c3nqxA_
not modelled
28.0
50
PDB header: hydrolaseChain: A: PDB Molecule: secreted metalloprotease mcp02;PDBTitle: crystal structure of vibriolysin mcp-02 mature enzyme, a zinc2 metalloprotease from m4 family
99 c3nqzB_
not modelled
27.3
50
PDB header: hydrolaseChain: B: PDB Molecule: secreted metalloprotease mcp02;PDBTitle: crystal structure of the autoprocessed vibriolysin mcp-02 with e369a2 mutation
100 c4l6tA_
not modelled
26.8
44
PDB header: hydrolaseChain: A: PDB Molecule: ecxa;PDBTitle: gm1 bound form of the ecx ab5 holotoxin
101 c2h1jA_
not modelled
25.8
40
PDB header: hydrolaseChain: A: PDB Molecule: oligoendopeptidase f;PDBTitle: 3.1 a x-ray structure of putative oligoendopeptidase f: crystals grown2 by microfluidic seeding
102 c4xtrG_
not modelled
23.2
39
PDB header: hydrolase/transport proteinChain: G: PDB Molecule: pep12p;PDBTitle: structure of get3 bound to the transmembrane domain of pep12
103 d3e11a1
not modelled
22.9
31
Fold: Zincin-likeSuperfamily: Metalloproteases ("zincins"), catalytic domainFamily: TTHA0227-like
104 c2di4B_
not modelled
22.9
33
PDB header: hydrolaseChain: B: PDB Molecule: cell division protein ftsh homolog;PDBTitle: crystal structure of the ftsh protease domain
105 c5na8B_
not modelled
22.7
29
PDB header: hydrolaseChain: B: PDB Molecule: putative dipeptidyl-peptidase iii;PDBTitle: structure of dpp iii from bacteroides thetaiotaomicron in closed form
106 d2di4a1
not modelled
22.3
31
Fold: FtsH protease domain-likeSuperfamily: FtsH protease domain-likeFamily: FtsH protease domain-like
107 c3hq2A_
not modelled
22.1
55
PDB header: hydrolaseChain: A: PDB Molecule: bacillus subtilis m32 carboxypeptidase;PDBTitle: bsucp crystal structure
