Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3208A_(TB9.4)_3585673_3585945
DateThu Aug 8 16:20:40 BST 2019
Unique Job ID0c6a30ddee34d3e5
SequenceVEVKIGITDS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.257 Y:28.991 Z:30.262
Model (left) based on template d1ip9a_
Top template information
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
Confidence and coverage
Confidence: 68.0% Coverage: 52%
47 residues ( 52% of your sequence) have been modelled with 68.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ip9a_



68.0 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
2c4tkzA_



62.5 21
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein gbs1890;
PDBTitle: crystal structure of phosphotransferase system component eiia from2 streptococcus agalactiae
3c3hfoC_



61.5 35
PDB header:rna binding protein
Chain: C: PDB Molecule:ssr3341 protein;
PDBTitle: crystal structure of an hfq protein from synechocystis sp.
4d2k57a1



52.4 17
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
5d2jn0a1



50.4 28
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
6d1wmha_



42.1 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
7d1tksa_



40.8 19
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
8d2rb6a1



38.9 27
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
9d2rd1a1



38.8 24
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
10c3mioA_



38.7 10
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00
11d1pdoa_



36.2 24
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
12d3bdua1



35.6 24
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
13c4p6dA_



34.7 30
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: structure of ribb complexed with po4 ion
14d2ra2a1



34.0 20
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
15c3lfhF_



31.2 14
PDB header:transferase
Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific
PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis
16c5t3uA_



30.5 28
PDB header:transport protein
Chain: A: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the pts iia protein associated with the fucose2 utilization operon from streptococcus pneumoniae
17d2hiya1



29.1 14
Fold:SP0830-like
Superfamily:SP0830-like
Family:SP0830-like
18d1k4ia_



25.9 17
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
19c3iprC_



25.2 17
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
20c4ffjA_



24.3 13
PDB header:lyase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: the crystal structure of spdhbps from s.pneumoniae
21d2a90a2



not modelled 23.4 15
Fold:WWE domain
Superfamily:WWE domain
Family:WWE domain
22c6fmgC_



not modelled 22.6 21
PDB header:transferase
Chain: C: PDB Molecule:pts system mannose-specific transporter subunit iiab;
PDBTitle: structure of the mannose transporter iia domain from streptococcus2 pneumoniae
23d1g57a_



not modelled 20.2 23
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
24c4bzpB_



not modelled 19.8 18
PDB header:transferase
Chain: B: PDB Molecule:bifunctional enzyme cysn/cysc;
PDBTitle: structure of the mycobacterium tuberculosis aps kinase cysc2 in complex with adp
25c2kmaA_



not modelled 19.0 20
PDB header:structural protein
Chain: A: PDB Molecule:talin 1;
PDBTitle: nmr structure of the f0f1 double domain (residues 1-202) of2 the talin ferm domain
26c3gx1A_



not modelled 18.5 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1832 protein;
PDBTitle: crystal structure of a domain of lin1832 from listeria innocua
27d1cr5a2



not modelled 17.7 11
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
28c4i14B_



not modelled 17.4 10
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: crystal structure of mtb-riba2 (rv1415)
29c1xs3A_



not modelled 17.3 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein xc975;
PDBTitle: solution structure analysis of the xc975 protein
30d1snna_



not modelled 16.9 23
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
31d1v86a_



not modelled 15.4 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
32c6gf8B_



not modelled 14.9 22
PDB header:cell adhesion
Chain: B: PDB Molecule:zona pellucida sperm-binding protein 1,zona pellucida
PDBTitle: molecular basis of egg coat filament cross-linking: structure of the2 glycosylated zp1 zp-n1 domain homodimer
33c3hfnA_



not modelled 14.5 30
PDB header:rna binding protein
Chain: A: PDB Molecule:asl2047 protein;
PDBTitle: crystal structure of an hfq protein from anabaena sp.
34d1wi9a_



not modelled 14.5 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
35c6mnzB_



not modelled 14.4 19
PDB header:lyase
Chain: B: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of ribbx, a two domain 3,4-dihydroxy-2-butanone 4-2 phosphate synthase from a. baumannii.
36c6g09A_



not modelled 14.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 8 domain protein;
PDBTitle: crystal structure of a gh8 xylobiose complex from teredinibacter2 turnerae
37c6nbpA_



not modelled 13.4 30
PDB header:transferase
Chain: A: PDB Molecule:n-formyltransferase;
PDBTitle: crystal structure of a sugar n-formyltransferase from the plant2 pathogen pantoea ananatis
38d1d3bl_



not modelled 12.7 9
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
39c2pmzL_



not modelled 11.9 21
PDB header:translation, transferase
Chain: L: PDB Molecule:dna-directed rna polymerase subunit l;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
40c4nv1D_



not modelled 11.4 14
PDB header:transferase
Chain: D: PDB Molecule:formyltransferase;
PDBTitle: crystal structure of a 4-n formyltransferase from francisella2 tularensis
41c2v9vA_



not modelled 11.1 13
PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
42d2fqla1



not modelled 11.0 22
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
43c3cbnA_



not modelled 11.0 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein mth639;
PDBTitle: crystal structure of a conserved protein (mth639) from2 methanobacterium thermoautotrophicum
44c3ip5A_



not modelled 10.8 29
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid);
PDBTitle: structure of atu2422-gaba receptor in complex with alanine
45c3g1zB_



not modelled 10.5 36
PDB header:ligase
Chain: B: PDB Molecule:putative lysyl-trna synthetase;
PDBTitle: structure of idp01693/yjea, a potential t-rna synthetase from2 salmonella typhimurium
46d1nvmb1



not modelled 10.2 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
47d2znvb1



not modelled 10.2 12
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
48c5d4pA_



not modelled 10.2 12
PDB header:signaling protein
Chain: A: PDB Molecule:putative nitrogen regulatory protein p-ii glnb;
PDBTitle: structure of cpii bound to adp and bicarbonate, from thiomonas2 intermedia k12
49c3tr3A_



not modelled 10.1 13
PDB header:unknown function
Chain: A: PDB Molecule:bola;
PDBTitle: structure of a bola protein homologue from coxiella burnetii
50d1bbua2



not modelled 9.3 25
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
51c4qiwU_



not modelled 9.0 13
PDB header:transcription
Chain: U: PDB Molecule:dna-directed rna polymerase subunit l;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
52d2ga5a1



not modelled 8.7 21
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
53d1e1oa2



not modelled 8.6 36
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
54d1b8aa2



not modelled 8.6 25
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
55d3beda1



not modelled 8.6 17
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
56d1ir1s_



not modelled 8.4 17
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
57d2a90a1



not modelled 8.4 13
Fold:WWE domain
Superfamily:WWE domain
Family:WWE domain
58c2kd0A_



not modelled 8.4 9
PDB header:signaling protein
Chain: A: PDB Molecule:lrr repeats and ubiquitin-like domain-containing
PDBTitle: nmr solution structure of o64736 protein from arabidopsis2 thaliana. northeast structural genomics consortium mega3 target ar3445a
59d1tdha3



not modelled 8.1 38
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
60c2rrnA_



not modelled 8.1 11
PDB header:protein transport
Chain: A: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: solution structure of secdf periplasmic domain p4
61c5kdvA_



not modelled 8.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:metallopeptidase;
PDBTitle: impa metallopeptidase from pseudomonas aeruginosa
62d2vzsa2



not modelled 8.0 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
63c4yfvA_



not modelled 7.9 14
PDB header:transferase
Chain: A: PDB Molecule:viof;
PDBTitle: x-ray structure of the 4-n-formyltransferase viof from providencia2 alcalifaciens o30
64d1h4vb2



not modelled 7.9 38
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
65d1eova2



not modelled 7.8 19
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
66d1ekga_



not modelled 7.7 31
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
67c2x4lA_



not modelled 7.6 19
PDB header:transport
Chain: A: PDB Molecule:ferric-siderophore receptor protein;
PDBTitle: crystal structure of dese, a ferric-siderophore receptor protein from2 streptomyces coelicolor
68d1ndda_



not modelled 7.6 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
69d1fxkc_



not modelled 7.6 16
Fold:Long alpha-hairpin
Superfamily:Prefoldin
Family:Prefoldin
70c3v9pA_



not modelled 7.5 9
PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase from burkholderia2 thailandensis
71c2mqjA_



not modelled 7.5 17
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-like protein;
PDBTitle: solution structure of ubiquitin-like protein from caldiarchaeum2 subterraneum
72c3ts3D_



not modelled 7.4 29
PDB header:viral protein
Chain: D: PDB Molecule:capsid polyprotein;
PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution
73d1kmma2



not modelled 7.3 31
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
74c4hs5B_



not modelled 7.3 19
PDB header:metal binding protein
Chain: B: PDB Molecule:protein cyay;
PDBTitle: frataxin from psychromonas ingrahamii as a model to study stability2 modulation within cyay protein family
75c2klcA_



not modelled 7.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr solution structure of human ubiquitin-like domain of ubiquilin 1,2 northeast structural genomics consortium (nesg) target ht5a
76c4mo9A_



not modelled 7.0 25
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of troa-like periplasmic binding protein fepb from2 veillonella parvula
77d1ew4a_



not modelled 7.0 41
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
78d1nnha_



not modelled 7.0 36
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
79d2fnjb1



not modelled 7.0 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
80c6b0nG_



not modelled 6.9 30
PDB header:viral protein/immune system
Chain: G: PDB Molecule:envelope glycoprotein gp140;
PDBTitle: crystal structure of the cleavage-independent prefusion hiv env2 glycoprotein trimer of the clade a bg505 isolate (nfl construct) in3 complex with fabs pgt122 and pgv19 at 3.39 a
81c3d6wA_



not modelled 6.9 20
PDB header:dna binding protein
Chain: A: PDB Molecule:methyl-accepting/dna response regulator;
PDBTitle: lyttr dna-binding domain of putative methyl-accepting/dna response2 regulator from bacillus cereus.
82c5ur0B_



not modelled 6.8 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystallographic structure of glyceraldehyde-3-phosphate dehydrogenase2 from naegleria gruberi
83c3t61A_



not modelled 6.7 21
PDB header:transferase
Chain: A: PDB Molecule:gluconokinase;
PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021
84c4k95G_



not modelled 6.7 14
PDB header:ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: crystal structure of parkin
85c5nfmA_



not modelled 6.5 16
PDB header:ligase
Chain: A: PDB Molecule:yrba;
PDBTitle: crystal structure of yrba from sinorhizobium meliloti in complex with2 copper.
86d1knqa_



not modelled 6.5 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Gluconate kinase
87d1qe0a2



not modelled 6.5 15
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
88d1wx7a1



not modelled 6.5 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
89c1yx5B_



not modelled 6.4 12
PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin;
PDBTitle: solution structure of s5a uim-1/ubiquitin complex
90c3be5D_



not modelled 6.4 21
PDB header:metal transport
Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter
PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein
91d1p9ya_



not modelled 6.4 15
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
92d1e6yb2



not modelled 6.4 17
Fold:Ferredoxin-like
Superfamily:Methyl-coenzyme M reductase subunits
Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
93c4l0jA_



not modelled 6.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase i;
PDBTitle: structure of a translocation signal domain mediating conjugative2 transfer by type iv secretion systems
94d1v2ya_



not modelled 6.2 12
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
95c4jpdA_



not modelled 6.1 38
PDB header:metal binding protein
Chain: A: PDB Molecule:protein cyay;
PDBTitle: the structure of cyay from burkholderia cenocepacia
96d1v5oa_



not modelled 6.0 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
97c2kanA_



not modelled 6.0 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ar3433a;
PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a
98d2phla2



not modelled 5.9 18
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
99c3w66A_



not modelled 5.8 17
PDB header:metal transport
Chain: A: PDB Molecule:magnetosome protein mamm;
PDBTitle: mamm-ctd d249a and h285a

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