Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3217c_(-)_3593801_3594232
DateThu Aug 8 16:20:41 BST 2019
Unique Job ID0219130807bced11
SequenceVPVRAPAAVR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.741 Y:26.010 Z:40.084
Model (left) based on template d2r6gf1
Top template information
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
Confidence and coverage
Confidence: 39.3% Coverage: 32%
46 residues ( 32% of your sequence) have been modelled with 39.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r6gf1



39.3 13
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
2c6adqP_



18.7 31
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
3c6ithA_



13.2 25
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
4c1cn3F_



11.8 55
PDB header:viral protein
Chain: F: PDB Molecule:fragment of coat protein vp2;
PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry
5d1u7ga_



10.8 16
Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter
6c2b2hA_



9.9 15
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
7c6eu6A_



9.5 16
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
8c5vkvA_



9.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccda;
PDBTitle: solution nmr structure of the membrane electron transporter ccda
9c2nuuF_



9.2 16
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
10c5aezA_



7.9 13
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below