Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3219_(whiB1)_3595710_3595964
DateThu Aug 8 16:20:41 BST 2019
Unique Job ID5ba29ebbd17d27a7
SequenceMDWRHKAVCR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.400 Y:26.497 Z:36.504
Model (left) based on template c5oayA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
Confidence and coverage
Confidence:100.0% Coverage: 89%
75 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5oayA_



100.0 100
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
2c4unfA_



47.9 28
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
3d1rrqa1



24.3 29
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
4c1vd3A_



23.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:rnase ngr3;
PDBTitle: ribonuclease nt in complex with 2'-ump
5c3saeA_



23.5 28
PDB header:lyase
Chain: A: PDB Molecule:alpha-bisabolene synthase;
PDBTitle: structure of a three-domain sesquiterpene synthase: a prospective2 target for advanced biofuels production
6c3pybB_



22.3 23
PDB header:isomerase
Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
7c1rrqA_



22.1 30
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
8d1orna_



21.3 31
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
9c2pqxA_



20.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease i;
PDBTitle: e. coli rnase 1 (in vivo folded)
10c2wj8N_



20.4 24
PDB header:rna binding protein/rna
Chain: N: PDB Molecule:nucleoprotein;
PDBTitle: respiratory syncitial virus ribonucleoprotein
11d1kg2a_



20.2 29
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
12c3p5rB_



18.9 33
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
13c4uobA_



18.3 31
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
14d1keaa_



17.7 23
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
15c3s9vD_



17.3 33
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
16c5fvcF_



16.8 24
PDB header:viral protein
Chain: F: PDB Molecule:hmpv nucleoprotein;
PDBTitle: structure of rna-bound decameric hmpv nucleoprotein
17c5fj9P_



14.9 0
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a
18c6f40P_



14.5 0
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: rna polymerase iii open complex
19c3n5nX_



12.9 38
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
20d2f62a1



12.6 18
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:N-deoxyribosyltransferase
21c1i8yA_



not modelled 11.1 60
PDB header:cytokine
Chain: A: PDB Molecule:granulin-1;
PDBTitle: semi-automatic structure determination of the cg1 3-302 peptide based on aria
22d1i8ya_



not modelled 11.1 60
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat
23c1hjiB_



not modelled 10.7 33
PDB header:bacteriophage hk022
Chain: B: PDB Molecule:nun-protein;
PDBTitle: bacteriophage hk022 nun-protein-nutboxb-rna complex
24c3zs9D_



not modelled 9.8 35
PDB header:hydrolase/transport protein
Chain: D: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
25d2abka_



not modelled 9.0 30
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
26d1dixa_



not modelled 8.8 18
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
27c4fdxB_



not modelled 8.8 27
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
28d1b4ua_



not modelled 8.6 15
Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
29d1k1xa1



not modelled 7.9 57
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
30c6dx2A_



not modelled 7.5 33
PDB header:hydrolase, protein binding
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from dera ghazi2 khan virus
31d1wo9a_



not modelled 7.2 50
Fold:PMP inhibitors
Superfamily:PMP inhibitors
Family:PMP inhibitors
32c3gycB_



not modelled 7.1 18
PDB header:hydrolase
Chain: B: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
33d1iqqa_



not modelled 7.0 18
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
34d1jy5a_



not modelled 7.0 18
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
35c2ru1A_



not modelled 6.6 56
PDB header:hormone
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of esf3
36d1gl0i_



not modelled 6.6 67
Fold:PMP inhibitors
Superfamily:PMP inhibitors
Family:PMP inhibitors
37c2f91B_



not modelled 6.4 50
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:serine protease inhibitor i/ii;
PDBTitle: 1.2a resolution structure of a crayfish trypsin complexed2 with a peptide inhibitor, sgti
38d1sgla_



not modelled 6.0 12
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
39d1sl8a_



not modelled 5.9 25
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
40d1iooa_



not modelled 5.7 12
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
41d1iyba_



not modelled 5.2 24
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
42d1g26a_



not modelled 5.1 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat

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