Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3226c_(-)_3602561_3603319
DateThu Aug 8 16:20:43 BST 2019
Unique Job ID1d3b117fd07e41dd
SequenceMCGRFAVTTD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.643 Y:53.140 Z:43.357
Model (left) based on template c5ko9A_
Top template information
PDB header:dna binding protein
Chain: A: PDB Molecule:embryonic stem cell-specific 5-hydroxymethylcytosine-
PDBTitle: crystal structure of the srap domain of human hmces protein
Confidence and coverage
Confidence:100.0% Coverage: 93%
234 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ko9A_



100.0 33
PDB header:dna binding protein
Chain: A: PDB Molecule:embryonic stem cell-specific 5-hydroxymethylcytosine-
PDBTitle: crystal structure of the srap domain of human hmces protein
2d2f20a1



100.0 24
Fold:BB1717-like
Superfamily:BB1717-like
Family:BB1717-like
3c2icuB_



100.0 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein yedk;
PDBTitle: crystal structure of hypothetical protein yedk from escherichia coli
4d2bdva1



100.0 24
Fold:BB1717-like
Superfamily:BB1717-like
Family:BB1717-like
5d1zn6a1



100.0 25
Fold:BB1717-like
Superfamily:BB1717-like
Family:BB1717-like
6c2aegA_



100.0 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein agr_pat_140;
PDBTitle: x-ray crystal structure of protein atu5096 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr63.
7d2aega1



100.0 21
Fold:BB1717-like
Superfamily:BB1717-like
Family:BB1717-like
8c3uksB_



26.1 11
PDB header:hydrolase
Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative;
PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii
9d1d9qa_



22.4 35
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
10c5oezA_



22.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:fbp protein;
PDBTitle: crystal structure of leishmania major fructose-1,6-bisphosphatase in2 apo form.
11d1bk4a_



21.8 39
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
12d1spia_



21.2 35
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
13c2gq1A_



21.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:fructose-1,6-bisphosphatase;
PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions
14d1nuwa_



21.1 44
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
15d1ftaa_



19.6 39
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
16c2fhyL_



18.1 39
PDB header:hydrolase
Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1;
PDBTitle: structure of human liver fpbase complexed with a novel benzoxazole as2 allosteric inhibitor
17c4eogA_



16.9 19
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of csx1 of pyrococcus furiosus
18c5iz3B_



14.7 11
PDB header:hydrolase
Chain: B: PDB Molecule:predicted protein;
PDBTitle: p. patens sedoheptulose-1,7-bisphosphatase
19c4txvB_



14.4 24
PDB header:protein binding
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: crystal structure of the mixed disulfide intermediate between2 thioredoxin-like tlpas(c110s) and subunit ii of cytochrome c oxidase3 coxbpd (c233s)
20c3ulcA_



12.4 10
PDB header:membrane protein
Chain: A: PDB Molecule:target of rapamycin complex 2 subunit avo1;
PDBTitle: crystal structure of the pleckstrin homology domain of saccharomyces2 cerevisiae avo1, a torc2 subunit, in the p3121 crystal form
21c1v55B_



not modelled 12.2 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state
22d2hewf1



not modelled 11.7 38
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
23c2hewF_



not modelled 11.7 38
PDB header:cytokine
Chain: F: PDB Molecule:tumor necrosis factor ligand superfamily member 4;
PDBTitle: the x-ray crystal structure of murine ox40l
24c6hu9n_



not modelled 11.4 29
PDB header:oxidoreductase/electron transport
Chain: N: PDB Molecule:cytochrome b;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
25c6hwhL_



not modelled 11.1 18
PDB header:electron transport
Chain: L: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
26d3dtub1



not modelled 10.9 41
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
27c2yqpA_



not modelled 10.9 50
PDB header:gene regulation, hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx59;
PDBTitle: solution structure of the zf-hit domain in dead (asp-glu-2 ala-asp) box polypeptide 59
28c4uurB_



not modelled 10.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative hemoglobin-like oxygen-binding protein;
PDBTitle: cold-adapted truncated hemoglobin from the antarctic marine bacterium2 pseudoalteromonas haloplanktis tac125
29d2hevf1



not modelled 9.7 38
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
30c1t3bA_



not modelled 9.4 22
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
31d3ehbb1



not modelled 9.1 35
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
32c2mxdA_



not modelled 8.4 27
PDB header:viral protein
Chain: A: PDB Molecule:viral protein genome-linked;
PDBTitle: solution structure of vpg of porcine sapovirus
33c1m57H_



not modelled 7.6 41
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
34c2d0jD_



not modelled 7.5 23
PDB header:transferase
Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta-
PDBTitle: crystal structure of human glcat-s apo form
35c1qleB_



not modelled 7.4 35
PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit cytochrome2 c oxidase in the completely oxidized state complexed with an antibody3 fv fragment
36c1ar1B_



not modelled 7.4 35
PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
37d1juha_



not modelled 6.8 20
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Quercetin 2,3-dioxygenase-like
38d1v54b1



not modelled 6.3 35
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
39c2m4hA_



not modelled 6.0 23
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
40d1eg3a3



not modelled 5.8 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
41d2gysa1



not modelled 5.7 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
42c3zf7v_



not modelled 5.5 15
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l22, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
43c3rbbA_



not modelled 5.3 38
PDB header:viral protein, protein binding
Chain: A: PDB Molecule:protein nef;
PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain

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