Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3227_(aroA)_3603374_3604726
DateThu Aug 8 16:20:43 BST 2019
Unique Job ID7ead958fbdf313c3
SequenceVKTWPAPTAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.598 Y:54.083 Z:64.446
Model (left) based on template c2o0zA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: mycobacterium tuberculosis epsp synthase in complex with product (eps)
Confidence and coverage
Confidence:100.0% Coverage: 94%
424 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2o0zA_



100.0 100
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: mycobacterium tuberculosis epsp synthase in complex with product (eps)
2d1g6sa_



100.0 32
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
3c5xwbB_



100.0 31
PDB header:transferase
Chain: B: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: crystal structure of 5-enolpyruvulshikimate-3-phosphate synthase from2 a psychrophilic bacterium, colwellia psychrerythraea
4c5bufA_



100.0 26
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: 2.37 angstrom structure of epsp synthase from acinetobacter baumannii
5d1rf6a_



100.0 24
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
6c3roiA_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: 2.20 angstrom resolution structure of 3-phosphoshikimate 1-2 carboxyvinyltransferase (aroa) from coxiella burnetii
7c3r38A_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1;
PDBTitle: 2.23 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-e
8c2pqdA_



100.0 28
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: a100g cp4 epsps liganded with (r)-difluoromethyl tetrahedral reaction2 intermediate analog
9c5ujsB_



100.0 19
PDB header:hydrolase,oxidoreductase
Chain: B: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: 2.45 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase from campylobacter jejuni.
10c3rmtB_



100.0 27
PDB header:transferase
Chain: B: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase 1;
PDBTitle: crystal structure of putative 5-enolpyruvoylshikimate-3-phosphate2 synthase from bacillus halodurans c-125
11d1ejda_



100.0 19
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
12c5u4hB_



100.0 18
PDB header:lipid-binding protein
Chain: B: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: 1.05 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase from acinetobacter baumannii in covalently3 bound complex with (2r)-2-(phosphonooxy)propanoic acid.
13d1uaea_



100.0 18
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
14c5wi5C_



100.0 19
PDB header:transferase
Chain: C: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1;
PDBTitle: 2.0 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase from streptococcus pneumoniae in complex3 with uridine-diphosphate-2(n-acetylglucosaminyl) butyric acid, (2r)-4 2-(phosphonooxy)propanoic acid and magnesium.
15c5bq2C_



100.0 18
PDB header:transferase
Chain: C: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase2 (udp-n-acetylglucosamine enolpyruvyl transferase, ept) from3 pseudomonas aeruginosa
16c3zh3A_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: crystal structure of s. pneumoniae d39 native mura1
17c4fqdA_



100.0 21
PDB header:transferase
Chain: A: PDB Molecule:niko protein;
PDBTitle: crystal structure of the enolpyruvyl transferase niko from2 streptomyces tendae
18c2yvwA_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase2 from aquifex aeolicus vf5
19d1p88a_



100.0 31
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
20d1qmha2



96.1 19
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:RNA 3'-terminal phosphate cyclase, RPTC
21c3pqvD_



not modelled 95.3 16
PDB header:unknown function
Chain: D: PDB Molecule:rcl1 protein;
PDBTitle: cyclase homolog
22c1qmiC_



not modelled 94.5 22
PDB header:ligase
Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology
23c4o8jB_



not modelled 71.8 21
PDB header:ligase/rna
Chain: B: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rtca, the rna 3'-terminal phosphate cyclase from2 pyrococcus horikoshii, in complex with racaaa3'phosphate and adenine.
24c4muoB_



not modelled 58.1 17
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein ybib;
PDBTitle: the trpd2 enzyme from e.coli: ybib
25d1x9za_



not modelled 55.6 19
Fold:DNA mismatch repair protein MutL
Superfamily:DNA mismatch repair protein MutL
Family:DNA mismatch repair protein MutL
26c1khdD_



not modelled 42.7 15
PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.9 resolution3 (current name, pectobacterium carotovorum)
27c1v8gB_



not modelled 35.1 21
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8
28c2ox1C_



not modelled 34.0 12
PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: archaeal dehydroquinase
29d1a66a_



not modelled 31.1 33
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
30d2fvta1



not modelled 29.9 12
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
31d1ml4a2



not modelled 29.8 13
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
32c4gtnA_



not modelled 29.6 18
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: structure of anthranilate phosphoribosyl transferase from2 acinetobacter baylyi
33d1a9xa1



not modelled 27.1 25
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
34d1ekxa2



not modelled 26.0 13
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
35c3ncvB_



not modelled 25.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: ngol
36c2zxrA_



not modelled 24.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:single-stranded dna specific exonuclease recj;
PDBTitle: crystal structure of recj in complex with mg2+ from thermus2 thermophilus hb8
37d2atca2



not modelled 24.4 13
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
38c2gm2A_



not modelled 24.1 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35
39c3gabC_



not modelled 23.9 14
PDB header:hydrolase
Chain: C: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: c-terminal domain of bacillus subtilis mutl crystal form i
40c5f56A_



not modelled 22.3 31
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:single-stranded-dna-specific exonuclease;
PDBTitle: structure of recj complexed with dna and ssb-ct
41c2yswB_



not modelled 17.8 15
PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5
42c4kjeA_



not modelled 16.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: atomic resolution structure of pfgrx1
43c2ltkA_



not modelled 16.2 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:mono-cysteine glutaredoxin;
PDBTitle: solution structure of a monomeric truncated mutant of trypanosoma2 brucei 1-c-grx1
44c1o17A_



not modelled 16.0 26
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyl-transferase (trpd)
45d2fi9a1



not modelled 15.3 10
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
46c5yq7L_



not modelled 14.8 15
PDB header:photosynthesis
Chain: L: PDB Molecule:precursor for l subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
47d1jjcb2



not modelled 14.6 28
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
48d1ni9a_



not modelled 14.5 30
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:GlpX-like bacterial fructose-1,6-bisphosphatase
49d1u0bb1



not modelled 14.1 18
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
50c1vqzA_



not modelled 14.0 12
PDB header:ligase
Chain: A: PDB Molecule:lipoate-protein ligase, putative;
PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution
51c1ml4A_



not modelled 13.2 15
PDB header:transferase
Chain: A: PDB Molecule:aspartate transcarbamoylase;
PDBTitle: the pala-liganded aspartate transcarbamoylase catalytic subunit from2 pyrococcus abyssi
52d1vpka1



not modelled 12.5 20
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase III, beta subunit
53c3js3C_



not modelled 12.4 13
PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate
54c2bpqB_



not modelled 11.7 19
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
55c5nofB_



not modelled 11.3 15
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase from thermococcus kodakaraensis
56d2dy1a4



not modelled 11.2 12
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
57c2yr1B_



not modelled 10.9 15
PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426
58c4yegA_



not modelled 10.9 12
PDB header:transferase
Chain: A: PDB Molecule:polyphosphate kinase 2;
PDBTitle: characterisation of polyphosphate kinase 2 from the intracellular2 pathogen francisella tularensis
59c3czqA_



not modelled 10.6 21
PDB header:transferase
Chain: A: PDB Molecule:putative polyphosphate kinase 2;
PDBTitle: crystal structure of putative polyphosphate kinase 2 from2 sinorhizobium meliloti
60c2gjhA_



not modelled 10.5 29
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
61c3nr6A_



not modelled 10.3 32
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:protease p14;
PDBTitle: crystal structure of xenotropic murine leukemia virus-related virus2 (xmrv) protease
62d1sr9a3



not modelled 10.1 21
Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
63c5m64M_



not modelled 10.0 19
PDB header:transcription
Chain: M: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: rna polymerase i elongation complex with a49 tandem winged helix2 domain
64c6ayyB_



not modelled 9.9 30
PDB header:hydrolase
Chain: B: PDB Molecule:fructose-1,6-bisphosphatase class 2;
PDBTitle: crystal structure of apo fructose-1,6-bisphosphatase from2 mycobacterium tuberculosis
65c5ld1D_



not modelled 9.7 7
PDB header:transferase
Chain: D: PDB Molecule:polyphosphate:amp phosphotransferase;
PDBTitle: crystal structure of polyphosphate kinase from meiothermus ruber bound2 to atp
66d1nh2a1



not modelled 9.4 14
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
67c2zc3F_



not modelled 9.3 11
PDB header:biosynthetic protein
Chain: F: PDB Molecule:penicillin-binding protein 2x;
PDBTitle: penicillin-binding protein 2x (pbp 2x) acyl-enzyme complex2 (biapenem) from streptococcus pneumoniae
68c6aqeB_



not modelled 9.3 11
PDB header:transferase
Chain: B: PDB Molecule:molecule a;
PDBTitle: crystal structure of ppk2 in complex with mg atp
69c3rojD_



not modelled 9.1 35
PDB header:hydrolase
Chain: D: PDB Molecule:d-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-
PDBTitle: d-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase2 of synechocystis sp. pcc 6803
70c3rhfB_



not modelled 8.9 11
PDB header:transferase
Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein;
PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1
71d1k8ba_



not modelled 8.7 15
Fold:Ribosome binding domain-like
Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
72c2cxiA_



not modelled 8.7 14
PDB header:ligase
Chain: A: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of an n-terminal fragment of the phenylalanyl-trna2 synthetase beta-subunit from pyrococcus horikoshii
73d1r7ma2



not modelled 8.6 15
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
74c3nfiB_



not modelled 8.3 19
PDB header:dna binding protein, transcription
Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: crystal structure of tandem winged helix domain of rna polymerase i2 subunit a49
75c3oqqA_



not modelled 8.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of a putative lipoprotein (bacova_00967) from2 bacteroides ovatus at 2.08 a resolution
76c3c6aA_



not modelled 7.6 22
PDB header:viral protein
Chain: A: PDB Molecule:terminase large subunit;
PDBTitle: crystal structure of the rb49 gp17 nuclease domain
77c4tr1A_



not modelled 7.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin 3;
PDBTitle: crystal structure of gsh-bound cgrx2/c15s
78d1cdwa1



not modelled 7.5 18
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
79c2rgwD_



not modelled 7.0 11
PDB header:transferase
Chain: D: PDB Molecule:aspartate carbamoyltransferase;
PDBTitle: catalytic subunit of m. jannaschii aspartate2 transcarbamoylase
80c5w66M_



not modelled 7.0 19
PDB header:transcription
Chain: M: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: rna polymerase i initial transcribing complex state 3
81c5mwwA_



not modelled 7.0 12
PDB header:transferase
Chain: A: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: sigma1.1 domain of sigmaa from bacillus subtilis
82c2hp0A_



not modelled 6.9 13
PDB header:isomerase
Chain: A: PDB Molecule:ids-epimerase;
PDBTitle: crystal structure of iminodisuccinate epimerase
83c2jugB_



not modelled 6.9 21
PDB header:biosynthetic protein
Chain: B: PDB Molecule:tubc protein;
PDBTitle: multienzyme docking in hybrid megasynthetases
84c3l9cA_



not modelled 6.9 12
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: the crystal structure of smu.777 from streptococcus mutans ua159
85c3fs2A_



not modelled 6.8 17
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 bruciella melitensis at 1.85a resolution
86c5ij6A_



not modelled 6.8 10
PDB header:ligase,transferase
Chain: A: PDB Molecule:lipoate--protein ligase;
PDBTitle: crystal structure of enterococcus faecalis lipoate-protein ligase a2 (lpla-1) in complex with lipoic acid
87d1omha_



not modelled 6.8 30
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain
88c2k2eA_



not modelled 6.7 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bp2786;
PDBTitle: solution nmr structure of bordetella pertussis protein2 bp2786, a mth938-like domain. northeast structural3 genomics consortium target ber31
89d1sqia1



not modelled 6.6 12
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
90c2k6xA_



not modelled 6.5 27
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpod;
PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure
91d1tuga1



not modelled 6.4 15
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
92d1qnaa1



not modelled 6.3 22
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
93c5zjgD_



not modelled 6.2 18
PDB header:transferase
Chain: D: PDB Molecule:gamma-glutamyltransferase 1 threonine peptidase. merops
PDBTitle: gamma-glutamyltranspeptidase from pseudomonas nitroreducens complexed2 with gly-gly
94c5jxpA_



not modelled 6.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
95d1gqna_



not modelled 6.2 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
96c4p71B_



not modelled 6.0 17
PDB header:ligase
Chain: B: PDB Molecule:phenylalanine--trna ligase beta subunit;
PDBTitle: apo phers from p. aeuriginosa
97c3b8iF_



not modelled 5.9 20
PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
98d1eysl_



not modelled 5.8 23
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
99c5tgtA_



not modelled 5.6 26
PDB header:ligase
Chain: A: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of glytamyl-trna synthetase glurs from pseudomonas2 aeruginosa

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Transmembrane helix prediction 

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