Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3231c_(-)_3608361_3608870
DateThu Aug 8 16:20:43 BST 2019
Unique Job ID14d61c2e5198ac25
SequenceVTQVYIPATL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.391 Y:10.168 Z:10.748
Model (left) based on template c1nbjA_
Top template information
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o1;
PDBTitle: high-resolution solution structure of cycloviolacin o1
Confidence and coverage
Confidence: 29.8% Coverage: 6%
10 residues ( 6% of your sequence) have been modelled with 29.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1nbjA_



29.8 60
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o1;
PDBTitle: high-resolution solution structure of cycloviolacin o1
2d1nbja_



29.8 60
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Cycloviolacin
3d1df6a_



18.5 60
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Cycloviolacin
4c1df6A_



18.5 60
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o1;
PDBTitle: 1h nmr solution structure of cycloviolacin o1
5d1d0gr3



18.0 8
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
6c6ambB_



15.0 44
PDB header:signaling protein
Chain: B: PDB Molecule:afadin;
PDBTitle: crystal structure of the afadin ra1 domain in complex with hras
7c3dwmA_



9.0 23
PDB header:transferase
Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a;
PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen
8c5ujdB_



8.5 21
PDB header:gene regulation
Chain: B: PDB Molecule:siderophore biosynthesis protein sbni;
PDBTitle: sbni from staphylococcus pseudintermedius
9c6jdpA_



8.5 30
PDB header:antitoxin
Chain: A: PDB Molecule:imm52 family protein;
PDBTitle: the imm52 family protein tsit (pa3908) from pseudomonas aeruginosa
10c4n6eB_



8.3 15
PDB header:lyase/biosynthetic protein
Chain: B: PDB Molecule:this/moad family protein;
PDBTitle: crystal structure of amycolatopsis orientalis bexx/cyso complex
11d1vb8a_



7.0 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Cycloviolacin
12c1vb8A_



7.0 50
PDB header:plant protein
Chain: A: PDB Molecule:viola hederacea root peptide 1;
PDBTitle: solution structure of vhr1, the first cyclotide from root2 tissue
13c2q6mA_



6.8 57
PDB header:toxin
Chain: A: PDB Molecule:cholix toxin;
PDBTitle: catalytic fragment of cholix toxin from vibrio cholerae in complex2 with the pj34 inhibitor

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite