Phyre 2 Results for RVBD3235_(-)_3611297

Email	mdejesus@rockefeller.edu
Description	RVBD3235_(-)_3611297_3611938
Date	Thu Aug 8 16:20:43 BST 2019
Unique Job ID	4a1dfd9f56fba045
Sequence	MMASNQTAAQ ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:21.559 Y:21.766 Z:13.833

Model (left) based on template c5kpeA_

Top template information

PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664

Confidence and coverage

Confidence:

28.7%

Coverage:

18 residues ( 8% of your sequence) have been modelled with 28.7% confidence by the single highest scoring template.

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Warning: 54% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

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Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

Domain analysis [Show]

Rank Aligned region

PDB 5kpe chain A

3D model

Region: 129 - 146
Aligned: 18
Modelled: 18
Confidence: 28.7%
Identity: 33%
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664

Phyre2

PDB 5no7 chain B

3D model

Region: 21 - 67
Aligned: 47
Modelled: 47
Confidence: 19.0%
Identity: 30%
PDB header:oxidoreductase
Chain: B: PDB Molecule:lytic polysaccharide monooxygenase;
PDBTitle: crystal structure of a xylan-active lytic polysaccharide monooxygenase2 from pycnoporus coccineus.

Phyre2

PDB 3fsd chain A

3D model

Region: 155 - 212
Aligned: 58
Modelled: 58
Confidence: 15.2%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution

Phyre2

PDB 2k4f chain A

3D model

Region: 47 - 54
Aligned: 8
Modelled: 8
Confidence: 11.5%
Identity: 50%
PDB header:immune system, signaling protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 epsilon chain;
PDBTitle: mouse cd3epsilon cytoplasmic tail

Phyre2

PDB 2adz chain A domain 1

3D model

Region: 183 - 212
Aligned: 30
Modelled: 30
Confidence: 10.8%
Identity: 23%
Fold: PH domain-like barrel
Superfamily: PH domain-like
Family: Pleckstrin-homology domain (PH domain)

Phyre2

PDB 2isl chain B

Region: 102 - 152
Aligned: 51
Modelled: 51
Confidence: 6.4%
Identity: 27%
PDB header:flavoprotein
Chain: B: PDB Molecule:blub;
PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form)

Phyre2

PDB 4atb chain B

3D model

Region: 112 - 120
Aligned: 9
Modelled: 9
Confidence: 5.7%
Identity: 78%
PDB header:immune system
Chain: B: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: crystal structure of the nf90-nf45 dimerisation domain2 complex with ctp

Phyre2

PDB 6of9 chain G

3D model

Region: 158 - 212
Aligned: 55
Modelled: 55
Confidence: 5.6%
Identity: 9%
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain

Phyre2

1
c5kpeA_

2
c5no7B_

3
c3fsdA_

4
c2k4fA_

5
d2adza1

6
c2islB_

7
c4atbB_

8
c6of9G_