Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3237c_(-)_3613118_3613600
DateThu Aug 8 16:20:44 BST 2019
Unique Job ID8493d32786285e9e
SequenceMDVKEVLLPG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.720 Y:31.276 Z:46.623
Model (left) based on template c2bknA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein ph0236;
PDBTitle: structure analysis of unknown function protein
Confidence and coverage
Confidence: 99.8% Coverage: 66%
105 residues ( 66% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2bknA_



99.8 26
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein ph0236;
PDBTitle: structure analysis of unknown function protein
2d2fy8a2



99.7 20
Fold:TrkA C-terminal domain-like
Superfamily:TrkA C-terminal domain-like
Family:TrkA C-terminal domain-like
3d1vcta2



99.7 29
Fold:TrkA C-terminal domain-like
Superfamily:TrkA C-terminal domain-like
Family:TrkA C-terminal domain-like
4c4xttA_



99.7 22
PDB header:transport protein
Chain: A: PDB Molecule:putative potassium transport protein;
PDBTitle: structural studies of potassium transport protein ktra regulator of2 conductance of k+ (rck) c domain in complex with cyclic diadenosine3 monophosphate (c-di-amp)
5c2fy8A_



99.6 17
PDB header:transport protein
Chain: A: PDB Molecule:calcium-gated potassium channel mthk;
PDBTitle: crystal structure of mthk rck domain in its ligand-free gating-ring2 form
6c1lnqC_



99.6 17
PDB header:metal transport
Chain: C: PDB Molecule:potassium channel related protein;
PDBTitle: crystal structure of mthk at 3.3 a
7c3jxoB_



99.5 24
PDB header:transport protein
Chain: B: PDB Molecule:trka-n domain protein;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
8c4gx2B_



99.5 27
PDB header:transport protein
Chain: B: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel bound to nad
9c4g65A_



99.4 20
PDB header:transport protein
Chain: A: PDB Molecule:trk system potassium uptake protein trka;
PDBTitle: potassium transporter peripheral membrane component (trka) from vibrio2 vulnificus
10c4j7cA_



99.4 21
PDB header:transport protein
Chain: A: PDB Molecule:ktr system potassium uptake protein a;
PDBTitle: ktrab potassium transporter from bacillus subtilis
11c4gvlB_



99.4 29
PDB header:transport protein
Chain: B: PDB Molecule:trka domain protein;
PDBTitle: crystal structure of the gsuk rck domain
12c4ys2A_



99.4 23
PDB header:immune system
Chain: A: PDB Molecule:na+/h+ antiporter-like protein;
PDBTitle: rck domain with cda
13c3l4bG_



98.9 23
PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
14c3u6nC_



98.7 17
PDB header:transport protein
Chain: C: PDB Molecule:high-conductance ca2+-activated k+ channel protein;
PDBTitle: open structure of the bk channel gating ring
15c4hpfB_



98.5 15
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:potassium channel subfamily u member 1;
PDBTitle: structure of the human slo3 gating ring
16c3mt5A_



98.2 15
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:potassium large conductance calcium-activated channel,
PDBTitle: crystal structure of the human bk gating apparatus
17c5u76A_



98.0 20
PDB header:transport protein
Chain: A: PDB Molecule:potassium channel subfamily t member 1;
PDBTitle: chicken slo2.2 in a closed conformation vitrified in the presence of2 300 mm nacl
18c5a6eC_



97.9 19
PDB header:transport
Chain: C: PDB Molecule:gating ring of potassium channel subfamily t member 1;
PDBTitle: cryo-em structure of the slo2.2 na-activated k channel
19c5tj6A_



97.8 17
PDB header:membrane protein
Chain: A: PDB Molecule:high conductance calcium-activated potassium channel;
PDBTitle: ca2+ bound aplysia slo1
20c3nafA_



97.4 17
PDB header:ion transport
Chain: A: PDB Molecule:calcium-activated potassium channel subunit alpha-1,
PDBTitle: structure of the intracellular gating ring from the human high-2 conductance ca2+ gated k+ channel (bk channel)
21c5wwwA_



not modelled 36.7 14
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:rna-binding e3 ubiquitin-protein ligase mex3c;
PDBTitle: crystal structure of the kh1 domain of human rna-binding e3 ubiquitin-2 protein ligase mex-3c complex with rna
22d2cu3a1



not modelled 36.6 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
23c1tuaA_



not modelled 36.1 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ape0754;
PDBTitle: 1.5 a crystal structure of a protein of unknown function2 ape0754 from aeropyrum pernix
24d1zud21



not modelled 34.9 7
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
25c5z1vB_



not modelled 30.6 16
PDB header:unknown function
Chain: B: PDB Molecule:avrpib protein;
PDBTitle: crystal structure of avrpib
26d1e5qa1



not modelled 29.9 7
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
27d1k25a2



not modelled 27.6 2
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
28c2qndA_



not modelled 26.8 17
PDB header:rna binding protein
Chain: A: PDB Molecule:fmr1 protein;
PDBTitle: crystal structure of the kh1-kh2 domains from human fragile x mental2 retardation protein
29d1tuaa2



not modelled 24.4 28
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
30c2kl0A_



not modelled 22.3 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
31c2bjeA_



not modelled 21.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:acylphosphatase;
PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group
32c3cwiA_



not modelled 21.3 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
33d1rp5a2



not modelled 20.1 0
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
34c3jcrK_



not modelled 18.3 18
PDB header:splicing
Chain: K: PDB Molecule:hprp3;
PDBTitle: 3d structure determination of the human*u4/u6.u5* tri-snrnp complex
35d1k25a1



not modelled 18.2 13
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
36c2kfwA_



not modelled 17.7 17
PDB header:isomerase
Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase
PDBTitle: solution structure of full-length slyd from e.coli
37c5fwhA_



not modelled 16.4 32
PDB header:structural protein
Chain: A: PDB Molecule:essc;
PDBTitle: n-terminal fha domain from essc a component of the2 bacterial type vii secretion apparatus
38c2dgrA_



not modelled 16.3 23
PDB header:rna binding protein
Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1;
PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1
39d1y7ma2



not modelled 16.0 24
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
40c6g18x_



not modelled 16.0 21
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s23;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state c
41d1w2ia_



not modelled 15.7 15
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
42c2e3uA_



not modelled 15.6 33
PDB header:rna binding protein
Chain: A: PDB Molecule:hypothetical protein ph1566;
PDBTitle: crystal structure analysis of dim2p from pyrococcus horikoshii ot3
43d1tygb_



not modelled 15.0 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
44c2y3mA_



not modelled 14.8 4
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein hofq;
PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans
45c4uw2C_



not modelled 14.5 25
PDB header:immune system
Chain: C: PDB Molecule:csm1;
PDBTitle: crystal structure of csm1 in t.onnurineus
46c3rl4A_



not modelled 14.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:metallophosphoesterase mpped2;
PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant
47c3br8A_



not modelled 14.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: crystal structure of acylphosphatase from bacillus subtilis
48c4dt4A_



not modelled 14.0 7
PDB header:isomerase
Chain: A: PDB Molecule:fkbp-type 16 kda peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of the ppiase-chaperone slpa with the chaperone2 binding site occupied by the linker of the purification tag
49c2lxfA_



not modelled 13.9 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a potential acylphosphatase from giardia2 lamblia, seattle structural genomics center for infectious disease3 target gilaa.01396.a
50c3ie4A_



not modelled 13.9 20
PDB header:immune system
Chain: A: PDB Molecule:gram-negative binding protein 3;
PDBTitle: b-glucan binding domain of drosophila gnbp3 defines a novel2 family of pattern recognition receptor
51d1pyya1



not modelled 13.7 13
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
52c4guaB_



not modelled 13.7 14
PDB header:hydrolase
Chain: B: PDB Molecule:non-structural polyprotein;
PDBTitle: alphavirus p23pro-zbd
53c6emlp_



not modelled 12.7 23
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: cryo-em structure of a late pre-40s ribosomal subunit from2 saccharomyces cerevisiae
54c2rqeA_



not modelled 12.6 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:beta-1,3-glucan-binding protein;
PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition
55c4hi2B_



not modelled 12.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:acylphosphatase;
PDBTitle: crystal structure of an acylphosphatase protein cage
56d1pyya2



not modelled 12.3 0
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
57c2hh2A_



not modelled 12.2 18
PDB header:rna binding protein
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: solution structure of the fourth kh domain of ksrp
58d8ohma2



not modelled 11.6 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
59c2i5hA_



not modelled 11.2 63
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1531;
PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655
60d2i5ha1



not modelled 11.2 63
Fold:AF1531-like
Superfamily:AF1531-like
Family:AF1531-like
61c6b8wB_



not modelled 11.1 14
PDB header:transcription
Chain: B: PDB Molecule:xre family transcriptional regulator;
PDBTitle: 1.9 angstrom resolution crystal structure of cupin_2 domain (pfam2 07883) of xre family transcriptional regulator from enterobacter3 cloacae.
62d1pn0a3



not modelled 10.5 18
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:PHBH-like
63d1zzka1



not modelled 10.5 20
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
64d2b9da1



not modelled 10.1 22
Fold:E7 C-terminal domain-like
Superfamily:E7 C-terminal domain-like
Family:E7 C-terminal domain-like
65d1sdwa2



not modelled 10.1 12
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:PHM/PNGase F
Family:Peptidylglycine alpha-hydroxylating monooxygenase, PHM
66d1zrra1



not modelled 10.1 15
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Acireductone dioxygenase
67c1w78A_



not modelled 10.0 24
PDB header:synthase
Chain: A: PDB Molecule:folc bifunctional protein;
PDBTitle: e.coli folc in complex with dhpp and adp
68c4yhwA_



not modelled 9.9 33
PDB header:splicing
Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: yeast prp3 (296-469) in complex with fragment of u4/u6 di-snrna
69d1o5za1



not modelled 9.9 16
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
70c2wkdA_



not modelled 9.7 33
PDB header:dna binding protein
Chain: A: PDB Molecule:orf34p2;
PDBTitle: crystal structure of a double ile-to-met mutant of protein orf34 from2 lactococcus phage p2
71c3gr5A_



not modelled 9.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:escc;
PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec)
72d1ulra_



not modelled 9.1 10
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
73d1nm2a2



not modelled 9.1 18
Fold:Ferredoxin-like
Superfamily:Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family:Probable ACP-binding domain of malonyl-CoA ACP transacylase
74c2gu9B_



not modelled 8.9 19
PDB header:immune system
Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein;
PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure
75d2ewla1



not modelled 8.8 17
Fold:E7 C-terminal domain-like
Superfamily:E7 C-terminal domain-like
Family:E7 C-terminal domain-like
76d1dtja_



not modelled 8.8 14
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
77c1tygG_



not modelled 8.7 18
PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
78c2hc8A_



not modelled 8.6 32
PDB header:transport protein
Chain: A: PDB Molecule:cation-transporting atpase, p-type;
PDBTitle: structure of the a. fulgidus copa a-domain
79c2ki0A_



not modelled 8.4 19
PDB header:de novo protein
Chain: A: PDB Molecule:ds119;
PDBTitle: nmr structure of a de novo designed beta alpha beta
80c2y9kG_



not modelled 8.4 12
PDB header:protein transport
Chain: G: PDB Molecule:protein invg;
PDBTitle: three-dimensional model of salmonella's needle complex at subnanometer2 resolution
81c1uheA_



not modelled 8.4 14
PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain;
PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex
82c5z2vB_



not modelled 8.2 71
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recr from pseudomonas aeruginosa pao1
83c2yqrA_



not modelled 8.2 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0907 protein;
PDBTitle: solution structure of the kh domain in kiaa0907 protein
84c2kr7A_



not modelled 8.2 7
PDB header:isomerase
Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd;
PDBTitle: solution structure of helicobacter pylori slyd
85c3rykB_



not modelled 8.2 27
PDB header:isomerase
Chain: B: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase;
PDBTitle: 1.63 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 3,5-epimerase (rfbc) from bacillus anthracis str. ames with tdp and3 ppi bound
86d1g7sa2



not modelled 8.1 14
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
87c2l8kA_



not modelled 8.1 33
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 7;
PDBTitle: nmr structure of the arterivirus nonstructural protein 7 alpha (nsp72 alpha)
88c4idiA_



not modelled 7.9 16
PDB header:protein binding
Chain: A: PDB Molecule:oryza sativa rurm1-related;
PDBTitle: crystal structure of rurm1-related protein from plasmodium yoelii,2 py06420
89c1vddC_



not modelled 7.9 57
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
90c2z1eA_



not modelled 7.9 19
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form)
91d1kjwa1



not modelled 7.8 35
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
92c2khaA_



not modelled 7.8 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:beta-1,3-glucan-binding protein;
PDBTitle: solution structure of a pathogen recognition domain from a2 lepidopteran insect, plodia interpunctella
93c3fp9E_



not modelled 7.8 31
PDB header:hydrolase
Chain: E: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis
94c4zuaA_



not modelled 7.7 21
PDB header:transcription
Chain: A: PDB Molecule:exoenzyme s synthesis regulatory protein exsa;
PDBTitle: crystal structure of the exsa regulatory domain
95c5i65A_



not modelled 7.7 27
PDB header:unknown function
Chain: A: PDB Molecule:nonstructural proteins orf1a;
PDBTitle: porcine reproductive and respiratory syndrome virus nonstructural2 protein 7 alpha (nsp7 alpha)
96d2ctla1



not modelled 7.7 14
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
97c5zvqA_



not modelled 7.6 57
PDB header:recombination
Chain: A: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombination mediator protein recr
98c3dwmA_



not modelled 7.6 18
PDB header:transferase
Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a;
PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen
99d1vdda_



not modelled 7.5 57
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite