Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3238c_(-)_3613661_3614395
DateThu Aug 8 16:20:44 BST 2019
Unique Job ID22eade944475f732
SequenceMKRYLTIIYG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.940 Y:40.878 Z:54.831
Model (left) based on template c4a2nB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:isoprenylcysteine carboxyl methyltransferase;
PDBTitle: crystal structure of ma-icmt
Confidence and coverage
Confidence: 99.9% Coverage: 75%
184 residues ( 75% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
240 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4a2nB_



99.9 11
PDB header:transferase
Chain: B: PDB Molecule:isoprenylcysteine carboxyl methyltransferase;
PDBTitle: crystal structure of ma-icmt
2c5v7pA_



99.9 19
PDB header:transferase
Chain: A: PDB Molecule:protein-s-isoprenylcysteine o-methyltransferase;
PDBTitle: atomic structure of the eukaryotic intramembrane ras methyltransferase2 icmt (isoprenylcysteine carboxyl methyltransferase), in complex with3 a monobody
3c4quvB_



99.9 12
PDB header:oxidoreductase, membrane protein
Chain: B: PDB Molecule:delta(14)-sterol reductase;
PDBTitle: structure of an integral membrane delta(14)-sterol reductase
4c4y9iA_



57.6 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
5c3r5yC_



37.7 23
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
6d1kf6c_



36.2 17
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
7c3r5wO_



25.6 23
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
8c5e8jC_



23.8 20
PDB header:translation
Chain: C: PDB Molecule:rnmt-activating mini protein;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase in complex2 with ram
9c3h96B_



21.7 14
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
10c5c6hN_



20.3 47
PDB header:apoptosis/apoptosis regulator
Chain: N: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
11c5c6hT_



20.3 47
PDB header:apoptosis/apoptosis regulator
Chain: T: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
12c5c6hH_



20.3 47
PDB header:apoptosis/apoptosis regulator
Chain: H: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
13c5c6hD_



20.3 47
PDB header:apoptosis/apoptosis regulator
Chain: D: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
14c5c6hP_



20.3 47
PDB header:apoptosis/apoptosis regulator
Chain: P: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
15c5c6hB_



19.9 47
PDB header:apoptosis/apoptosis regulator
Chain: B: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
16c5c6hX_



19.6 47
PDB header:apoptosis/apoptosis regulator
Chain: X: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
17c3r5zB_



18.8 14
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
18c5c6hR_



18.1 42
PDB header:apoptosis/apoptosis regulator
Chain: R: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
19c5c6hL_



16.5 47
PDB header:apoptosis/apoptosis regulator
Chain: L: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
20c5c6hF_



15.8 47
PDB header:apoptosis/apoptosis regulator
Chain: F: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
21d1k99a_



not modelled 13.4 7
Fold:HMG-box
Superfamily:HMG-box
Family:HMG-box
22c5c6hV_



not modelled 13.1 40
PDB header:apoptosis/apoptosis regulator
Chain: V: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
23c5c6hJ_



not modelled 10.3 42
PDB header:apoptosis/apoptosis regulator
Chain: J: PDB Molecule:mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
PDBTitle: mcl-1 complexed with mule
24c1p58F_



not modelled 9.7 23
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
25c6dftE_



not modelled 9.6 29
PDB header:transferase
Chain: E: PDB Molecule:deoxyhypusine synthase;
PDBTitle: trypanosoma brucei deoxyhypusine synthase
26c5ht7A_



not modelled 9.5 14
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transition-metal-ion-binding betagamma-2 crystallin from methanosaeta thermophila
27c1p58E_



not modelled 9.1 19
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
28c4lgdH_



not modelled 9.0 26
PDB header:signaling protein
Chain: H: PDB Molecule:ras association domain family member 5, rassf5;
PDBTitle: structural basis for autoactivation of human mst2 kinase and its2 regulation by rassf5
29c5o60g_



not modelled 8.2 50
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
30c6em5v_



not modelled 8.0 31
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l23-a;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
31c6dftJ_



not modelled 7.8 31
PDB header:transferase
Chain: J: PDB Molecule:deoxyhypusine synthase regulatory subunit;
PDBTitle: trypanosoma brucei deoxyhypusine synthase
32d2i5ha1



not modelled 7.8 22
Fold:AF1531-like
Superfamily:AF1531-like
Family:AF1531-like
33c2i5hA_



not modelled 7.8 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1531;
PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655
34c1geaA_



not modelled 7.6 36
PDB header:neuropeptide
Chain: A: PDB Molecule:pituitary adenylate cyclase activating
PDBTitle: receptor-bound conformation of pacap21
35c1ckxA_



not modelled 7.6 36
PDB header:metal transport
Chain: A: PDB Molecule:cystic fibrosis transmembrane conductance
PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation
36c4p63A_



not modelled 6.7 23
PDB header:transferase
Chain: A: PDB Molecule:probable deoxyhypusine synthase;
PDBTitle: crystal structure of deoxyhypusine synthase from pyrococcus horikoshii
37d2e74g1



not modelled 6.6 29
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
38c1vf5G_



not modelled 6.4 24
PDB header:photosynthesis
Chain: G: PDB Molecule:protein pet g;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
39d1vf5g_



not modelled 6.4 24
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
40d1e7la1



not modelled 6.3 38
Fold:LEM/SAP HeH motif
Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains
Family:Recombination endonuclease VII, C-terminal and dimerization domains
41c4bqqB_



not modelled 6.3 19
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: protein crystal structure of the n-terminal and recombinase domains of2 the streptomyces temperate phage serine recombinase, fc31 integrase.
42c2mc0A_



not modelled 6.2 23
PDB header:transcription activator/antibiotic
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: structural basis of a thiopeptide antibiotic multidrug resistance2 system from streptomyces lividans:nosiheptide in complex with tipas
43c4hxhC_



not modelled 5.8 22
PDB header:rna/rna binding protein/hydrolase
Chain: C: PDB Molecule:histone rna hairpin-binding protein;
PDBTitle: structure of mrna stem-loop, human stem-loop binding protein and2 3'hexo ternary complex
44d1dhsa_



not modelled 5.8 15
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Deoxyhypusine synthase, DHS
45c2yqrA_



not modelled 5.6 20
PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0907 protein;
PDBTitle: solution structure of the kh domain in kiaa0907 protein
46c3j2pD_



not modelled 5.5 21
PDB header:viral protein
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: cryoem structure of dengue virus envelope protein heterotetramer
47d2oy9a1



not modelled 5.5 11
Fold:BH2638-like
Superfamily:BH2638-like
Family:BH2638-like
48c5n7kD_



not modelled 5.4 32
PDB header:cell adhesion
Chain: D: PDB Molecule:marvel domain-containing protein 2;
PDBTitle: crystal structure of the coiled-coil domain of human tricellulin
49c2na6C_



not modelled 5.4 56
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
50c2na6A_



not modelled 5.4 56
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
51d1hhsa_



not modelled 5.4 44
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:dsRNA phage RNA-dependent RNA-polymerase
52c2na6B_



not modelled 5.4 56
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below