Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3241c_(-)_3620607_3621251
DateThu Aug 8 16:20:44 BST 2019
Unique Job ID0f8a7b0c3af8daf3
SequenceVDSGQVLAEP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.389 Y:51.289 Z:31.397
Model (left) based on template c5mmjy_
Top template information
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
Confidence and coverage
Confidence: 99.9% Coverage: 52%
111 residues ( 52% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
180 residues ( 84%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5mmjy_



99.9 25
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
2c6dzkY_



99.9 84
PDB header:ribosome
Chain: Y: PDB Molecule:ribosome hibernation promoting factor;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 30s ribosomal2 subunit with mpy
3c3ka5A_



99.9 43
PDB header:chaperone
Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1);
PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a
4d1l4sa_



99.9 17
Fold:Ribosome binding protein Y (YfiA homologue)
Superfamily:Ribosome binding protein Y (YfiA homologue)
Family:Ribosome binding protein Y (YfiA homologue)
5c2rqlA_



99.9 29
PDB header:translation
Chain: A: PDB Molecule:probable sigma-54 modulation protein;
PDBTitle: solution structure of the e. coli ribosome hibernation2 promoting factor hpf
6c6qbzA_



99.9 24
PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosome hibernation promoting factor;
PDBTitle: solution structure of the n-terminal domain of the staphylococcus2 aureus hibernation promoting factor
7c3tqmD_



99.9 22
PDB header:protein binding
Chain: D: PDB Molecule:ribosome-associated factor y;
PDBTitle: structure of an ribosomal subunit interface protein from coxiella2 burnetii
8d1imua_



99.9 18
Fold:Ribosome binding protein Y (YfiA homologue)
Superfamily:Ribosome binding protein Y (YfiA homologue)
Family:Ribosome binding protein Y (YfiA homologue)
9c4fylB_



99.9 34
PDB header:translation
Chain: B: PDB Molecule:ribosome hibernation protein yhbh;
PDBTitle: high-resolution x-ray structure of hpf from vibrio cholerae
10c3k2tA_



99.9 46
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2511 protein;
PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
11d2ywqa1



99.9 38
Fold:Ribosome binding protein Y (YfiA homologue)
Superfamily:Ribosome binding protein Y (YfiA homologue)
Family:Ribosome binding protein Y (YfiA homologue)
12c3lyvF_



99.8 48
PDB header:chaperone
Chain: F: PDB Molecule:ribosome-associated factor y;
PDBTitle: crystal structure of a domain of ribosome-associated factor y from2 streptococcus pyogenes serotype m6. northeast structural genomics3 consortium target id dr64a
13c4jw1A_



47.3 36
PDB header:hydrolase activator
Chain: A: PDB Molecule:effector protein b;
PDBTitle: crystal structure of n-terminal 618-residue fragment of lepb from2 legionella pneumophila
14c3zf7R_



45.2 12
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l17, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
15d1ohea1



40.1 12
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
16c2j43A_



40.0 8
PDB header:carbohydrate-binding module
Chain: A: PDB Molecule:spydx;
PDBTitle: alpha-glucan recognition by family 41 carbohydrate-binding2 modules from streptococcal virulence factors
17c1oheA_



39.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
18d1m0wa1



35.8 20
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Eukaryotic glutathione synthetase, substrate-binding domain
19c3vcaA_



34.9 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:ring-hydroxylating dioxygenase;
PDBTitle: quaternary ammonium oxidative demethylation: x-ray crystallographic,2 resonance raman and uv-visible spectroscopic analysis of a rieske-3 type demethylase
20c4v19W_



33.6 39
PDB header:ribosome
Chain: W: PDB Molecule:mitoribosomal protein ul22m, mrpl22;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
21c2j44A_



not modelled 33.2 19
PDB header:carbohydrate-binding module
Chain: A: PDB Molecule:alkaline amylopullulanase;
PDBTitle: alpha-glucan binding by a streptococcal virulence factor
22c5nwmA_



not modelled 31.4 0
PDB header:signaling protein
Chain: A: PDB Molecule:nuclear receptor coactivator 1;
PDBTitle: insight into the molecular recognition mechanism of the coactivator2 ncoa1 by stat6
23c3n0qA_



not modelled 30.1 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
24c4ce4W_



not modelled 29.5 37
PDB header:ribosome
Chain: W: PDB Molecule:mrpl22;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
25c3j39P_



not modelled 27.8 21
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
26c5o60T_



not modelled 27.8 21
PDB header:ribosome
Chain: T: PDB Molecule:50s ribosomal protein l22;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
27d2zjrp1



not modelled 27.5 22
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
28c2jvfA_



not modelled 27.3 19
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
29c3jywN_



not modelled 26.6 18
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
30c1vw4O_



not modelled 25.9 16
PDB header:ribosome
Chain: O: PDB Molecule:54s ribosomal protein l22, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
31c2xp1A_



not modelled 24.7 11
PDB header:transcription
Chain: A: PDB Molecule:spt6;
PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6
32c3j21S_



not modelled 24.3 24
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l22p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
33d1i4ja_



not modelled 23.9 11
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
34c5boiA_



not modelled 23.7 21
PDB header:unknown function
Chain: A: PDB Molecule:germination protein ypeb;
PDBTitle: bacillus megaterium ypeb c-terminal domain
35d1nnxa_



not modelled 22.8 24
Fold:OB-fold
Superfamily:Hypothetical protein YgiW
Family:Hypothetical protein YgiW
36c3j3wS_



not modelled 22.6 17
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l22;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
37c1by0A_



not modelled 21.8 38
PDB header:rna binding protein
Chain: A: PDB Molecule:protein (hepatitis delta antigen);
PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen
38c2zylA_



not modelled 21.2 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis
39c2de7B_



not modelled 21.1 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
40c3nqrD_



not modelled 20.5 14
PDB header:transport protein
Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc;
PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2
41d2v8qe2



not modelled 20.3 14
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
42c4a17Q_



not modelled 19.5 18
PDB header:ribosome
Chain: Q: PDB Molecule:rpl17;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
43d1egxa_



not modelled 19.4 15
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
44c2ftcM_



not modelled 19.2 39
PDB header:ribosome
Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
45c3u5eP_



not modelled 18.4 15
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
46d2k0bx1



not modelled 18.3 29
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
47d1vqor1



not modelled 18.2 24
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
48c3fwrB_



not modelled 17.8 29
PDB header:transcription
Chain: B: PDB Molecule:yqzb protein;
PDBTitle: crystal structure of the cbs domains from the bacillus subtilis ccpn2 repressor complexed with adp
49c2zkrr_



not modelled 17.7 24
PDB header:ribosomal protein/rna
Chain: R: PDB Molecule:rna expansion segment es39 part i;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
50d2hkja2



not modelled 17.5 6
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:DNA gyrase/MutL, second domain
51c1v06A_



not modelled 17.2 22
PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus
52c4gi3C_



not modelled 17.1 42
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:greglin;
PDBTitle: crystal structure of greglin in complex with subtilisin
53d2awia1



not modelled 17.0 35
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:PrgX N-terminal domain-like
54c5mlcU_



not modelled 16.9 21
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l22, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
55c4wujB_



not modelled 16.9 6
PDB header:circadian clock protein
Chain: B: PDB Molecule:glycoside hydrolase family 15, cellulose signaling
PDBTitle: structural biochemistry of a fungal lov domain photoreceptor reveals2 an evolutionarily conserved pathway integrating blue-light and3 oxidative stress
56c3gcfC_



not modelled 16.3 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
57c5xw4A_



not modelled 16.2 19
PDB header:cell cycle
Chain: A: PDB Molecule:tyrosine-protein phosphatase cdc14;
PDBTitle: crystal structure of budding yeast cdc14p (wild type) in the apo state
58c1gmjD_



not modelled 16.2 25
PDB header:atpase inhibitor
Chain: D: PDB Molecule:atpase inhibitor;
PDBTitle: the structure of bovine if1, the regulatory subunit of mitochondrial2 f-atpase
59d2gycq1



not modelled 16.2 16
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
60c2vlgD_



not modelled 16.0 7
PDB header:transferase
Chain: D: PDB Molecule:sporulation kinase a;
PDBTitle: kina pas-a domain, homodimer
61c1yavB_



not modelled 16.0 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein bsu14130;
PDBTitle: crystal structure of cbs domain-containing protein ykul2 from bacillus subtilis
62c6h1wA_



not modelled 15.9 18
PDB header:unknown function
Chain: A: PDB Molecule:mj1004;
PDBTitle: crystal structure of protein mj1004 from mathanocaldococcus jannaschii
63d2b1xa1



not modelled 15.7 10
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
64c3zqbB_



not modelled 15.7 16
PDB header:cell invasion
Chain: B: PDB Molecule:protein prgi, cell invasion protein sipd;
PDBTitle: prgi-sipd from salmonella typhimurium
65c2m5jA_



not modelled 15.1 6
PDB header:signaling protein
Chain: A: PDB Molecule:hasr protein;
PDBTitle: solution structure of the periplasmic signaling domain of hasr, a2 tonb-dependent outer membrane heme transporter
66c5ts4A_



not modelled 15.1 21
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
67d1kx5b_



not modelled 14.8 22
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
68c2outA_



not modelled 14.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mu-like prophage flumu protein gp35, protein
PDBTitle: solution structure of hi1506, a novel two domain protein2 from haemophilus influenzae
69c4ky3A_



not modelled 14.5 32
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or327;
PDBTitle: three-dimensional structure of the orthorhombic crystal of2 computationally designed insertion domain , northeast structural3 genomics consortium (nesg) target or327
70d2bm0a4



not modelled 14.3 14
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
71d1rq8a_



not modelled 14.0 6
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
72c3i8nB_



not modelled 13.7 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp2912;
PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633.
73d2yzia1



not modelled 13.4 12
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
74d1vr9a3



not modelled 13.4 14
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
75c1vr9B_



not modelled 13.4 14
PDB header:unknown function
Chain: B: PDB Molecule:cbs domain protein/act domain protein;
PDBTitle: crystal structure of a cbs domain pair/act domain protein (tm0892)2 from thermotoga maritima at 1.70 a resolution
76d1nyta2



not modelled 13.3 7
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
77c4irtA_



not modelled 13.3 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative neuraminidase (bacova_03493) from2 bacteroides ovatus atcc 8483 at 1.74 a resolution
78c3jtfB_



not modelled 13.2 14
PDB header:transport protein
Chain: B: PDB Molecule:magnesium and cobalt efflux protein;
PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp
79d1qqfa_



not modelled 13.1 10
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
80d1jo0a_



not modelled 13.0 11
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
81c2jy8A_



not modelled 13.0 29
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
82d3bb6a1



not modelled 13.0 14
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:TehB-like
83c3lhhA_



not modelled 12.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:cbs domain protein;
PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1.
84d1lr0a_



not modelled 12.3 14
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TolA
85d1wqla1



not modelled 12.3 14
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
86d2bmoa1



not modelled 12.2 5
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
87d1rrpb_



not modelled 11.9 12
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Ran-binding domain
88c3l2iB_



not modelled 11.9 13
PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2.
89d1sr9a3



not modelled 11.8 10
Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
90d3dl3a1



not modelled 11.7 11
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:TehB-like
91c1p74B_



not modelled 11.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from haemophilus2 influenzae
92c3kxeD_



not modelled 11.5 29
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
93d1pvma4



not modelled 11.5 18
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
94c1m0tB_



not modelled 11.4 20
PDB header:ligase
Chain: B: PDB Molecule:glutathione synthetase;
PDBTitle: yeast glutathione synthase
95d1ln4a_



not modelled 11.3 9
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
96d2e9xd1



not modelled 11.0 27
Fold:GINS helical bundle-like
Superfamily:GINS helical bundle-like
Family:SLD5 N-terminal domain-like
97d2dy1a4



not modelled 10.9 14
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
98d2ooxe1



not modelled 10.8 14
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
99c5cegC_



not modelled 10.8 6
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum

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