Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3250c_(rubB)_3630381_3630563
DateThu Aug 8 16:20:45 BST 2019
Unique Job ID3a34d736ebac323b
SequenceVNDYKLFRCI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.571 Y:37.516 Z:26.904
Model (left) based on template c2kn9A_
Top template information
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
Confidence and coverage
Confidence:100.0% Coverage:100%
60 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kn9A_



100.0 98
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
2c1s24A_



99.9 57
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin 2;
PDBTitle: rubredoxin domain ii from pseudomonas oleovorans
3d1s24a_



99.9 57
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
4d1iroa_



99.9 47
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
5c2v3bB_



99.9 66
PDB header:oxidoreductase
Chain: B: PDB Molecule:rubredoxin 2;
PDBTitle: crystal structure of the electron transfer complex rubredoxin -2 rubredoxin reductase from pseudomonas aeruginosa.
6d4rxna_



99.9 51
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
7d1h7va_



99.9 31
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
8d2rdva_



99.9 51
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
9d1dx8a_



99.9 29
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
10d1qcva_



99.9 42
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
11d1brfa_



99.9 51
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
12d2dsxa1



99.9 51
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
13d1rb9a_



99.9 54
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
14d1iu5a_



99.9 49
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
15c2ms3A_



99.9 38
PDB header:electron transport
Chain: A: PDB Molecule:anaerobic nitric oxide reductase flavorubredoxin;
PDBTitle: the nmr structure of the rubredoxin domain of the no reductase2 flavorubredoxin from escherichia coli
16c2m4yA_



99.9 54
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: rubredoxin type protein from mycobacterium ulcerans
17d6rxna_



99.8 43
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
18c5xpdA_



99.7 45
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
19c2hr5B_



98.6 34
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
20d1lkoa2



98.6 34
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
21d1yuza2



not modelled 98.4 31
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
22c1dvbA_



not modelled 98.4 35
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
23c1yuzB_



not modelled 98.4 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
24d1nnqa2



not modelled 98.3 38
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
25c4tpuA_



not modelled 98.0 37
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: crystal structure of ferredoxin-dependent disulfide reductase from2 methanosarcina acetivorans
26d2gmga1



not modelled 92.9 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
27c5fywW_



not modelled 91.8 19
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
28c5zb8B_



not modelled 91.5 38
PDB header:dna binding protein
Chain: B: PDB Molecule:pfuendoq;
PDBTitle: crystal structure of the novel lesion-specific endonuclease pfuendoq2 from pyrococcus furiosus
29c6gymW_



not modelled 91.0 18
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
30c5iy9Q_



not modelled 90.2 21
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
31c5oqmW_



not modelled 88.6 18
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
32c5oqjW_



not modelled 88.4 18
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
33c3h0gI_



not modelled 88.0 19
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
34c2kdxA_



not modelled 87.5 30
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
35c5fmfR_



not modelled 87.5 20
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
36c3a44D_



not modelled 87.5 21
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
37c2lcqA_



not modelled 86.6 48
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
38c6o9lQ_



not modelled 86.6 23
PDB header:transcription/dna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the closed state
39c1i3qI_



not modelled 83.2 27
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
40d1m2ka_



not modelled 81.9 21
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
41c4c2mX_



not modelled 80.3 19
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
42c5flmI_



not modelled 79.9 21
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
43c5l9wC_



not modelled 79.8 20
PDB header:ligase
Chain: C: PDB Molecule:acetophenone carboxylase beta subunit;
PDBTitle: crystal structure of the apc core complex
44c2m6oA_



not modelled 79.0 50
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
45c4u3eA_



not modelled 77.9 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
46c3glsC_



not modelled 73.9 21
PDB header:hydrolase
Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3,
PDBTitle: crystal structure of human sirt3
47c5fjaI_



not modelled 73.7 14
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
48d1vd4a_



not modelled 71.5 23
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
49c4zlhB_



not modelled 70.8 45
PDB header:metal binding protein
Chain: B: PDB Molecule:lipopolysaccharide assembly protein b;
PDBTitle: structure of the lapb cytoplasmic domain at 2 angstroms
50c5m45I_



not modelled 70.4 22
PDB header:ligase
Chain: I: PDB Molecule:acetone carboxylase gamma subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
51d1q1aa_



not modelled 69.4 26
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
52d1hk8a_



not modelled 69.2 24
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
53c1hk8A_



not modelled 69.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
54c4o64C_



not modelled 67.9 24
PDB header:metal binding protein
Chain: C: PDB Molecule:lysine-specific demethylase 2b;
PDBTitle: zinc fingers of kdm2b
55c5iy9M_



not modelled 67.8 23
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
56d2ak3a2



not modelled 66.5 10
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
57c6et9H_



not modelled 65.9 34
PDB header:transferase
Chain: H: PDB Molecule:pfam duf35;
PDBTitle: structure of the acetoacetyl-coa-thiolase/hmg-coa-synthase complex2 from methanothermococcus thermolithotrophicus at 2.75 a
58d1yc5a1



not modelled 65.5 23
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
59c5vbnB_



not modelled 64.0 33
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of human dna polymerase epsilon b-subunit in complex2 with c-terminal domain of catalytic subunit
60d1e4va2



not modelled 63.3 10
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
61c6g5iy_



not modelled 62.5 22
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
62c5mg5W_



not modelled 62.4 13
PDB header:transferase
Chain: W: PDB Molecule:2,4-diacetylphloroglucinol biosynthesis protein;
PDBTitle: a multi-component acyltransferase phlabc from pseudomonas protegens2 soaked with the monoacetylphloroglucinol (mapg)
63c4i5iA_



not modelled 62.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:nad-dependent protein deacetylase sirtuin-1;
PDBTitle: crystal structure of the sirt1 catalytic domain bound to nad and an2 ex527 analog
64d1akya2



not modelled 61.1 16
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
65c1q14A_



not modelled 61.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:hst2 protein;
PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2
66c3g9yA_



not modelled 59.7 40
PDB header:transcription/rna
Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2;
PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa
67d1zina2



not modelled 59.0 23
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
68d1p3ja2



not modelled 58.0 19
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
69c5ol0B_



not modelled 57.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:putative silent information regulator 2,putative silent
PDBTitle: structure of leishmania infantum silent information regulator 22 related protein 1 (lisir2rp1) in complex with acetylated p53 peptide
70d1s3ga2



not modelled 56.3 19
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
71c2d9gA_



not modelled 55.5 31
PDB header:transcription
Chain: A: PDB Molecule:yy1-associated factor 2;
PDBTitle: solution structure of the zf-ranbp domain of yy1-associated2 factor 2
72c5a1vK_



not modelled 55.3 16
PDB header:transport protein
Chain: K: PDB Molecule:coatomer subunit alpha;
PDBTitle: the structure of the copi coat linkage i
73c6ok1B_



not modelled 55.1 33
PDB header:transport protein
Chain: B: PDB Molecule:chsh2(duf35);
PDBTitle: ltp2-chsh2(duf35) aldolase
74d1fp0a1



not modelled 54.3 30
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:PHD domain
75d1dl6a_



not modelled 54.1 23
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
76c2k5cA_



not modelled 53.9 30
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein pf0385;
PDBTitle: nmr structure for pf0385
77c3lpeF_



not modelled 53.8 37
PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase subunit e'';
PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii
78d2akla2



not modelled 53.6 25
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
79c1fp0A_



not modelled 52.8 31
PDB header:transcription
Chain: A: PDB Molecule:kap-1 corepressor;
PDBTitle: solution structure of the phd domain from the kap-12 corepressor
80c6nmiF_



not modelled 52.8 27
PDB header:transcription
Chain: F: PDB Molecule:general transcription factor iih subunit 3, p34;
PDBTitle: cryo-em structure of the human tfiih core complex
81c2lk1A_



not modelled 51.8 40
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
82c2lk0A_



not modelled 50.1 40
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
83c5btrB_



not modelled 49.7 22
PDB header:hydrolase/substrate
Chain: B: PDB Molecule:nad-dependent protein deacetylase sirtuin-1;
PDBTitle: crystal structure of sirt1 in complex with resveratrol and an amc-2 containing peptide
84c4bbqA_



not modelled 48.9 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 2a;
PDBTitle: crystal structure of the cxxc and phd domain of human lysine-specific2 demethylase 2a (kdm2a)(fbxl11)
85c3k1fM_



not modelled 48.4 27
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
86c3mv2A_



not modelled 48.1 16
PDB header:protein transport
Chain: A: PDB Molecule:coatomer subunit alpha;
PDBTitle: crystal structure of a-cop in complex with e-cop
87c2mxvA_



not modelled 47.9 50
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 10;
PDBTitle: nmr structure of the first zinc finger domain of rbm10
88c5oqdB_



not modelled 47.4 13
PDB header:gene regulation
Chain: B: PDB Molecule:polycomb protein pcl;
PDBTitle: phd2 and winged-helix domain of polycomblike
89d1wila_



not modelled 47.3 22
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:variant PHD-like domain
90d1wgma_



not modelled 47.2 15
Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
91c3k7aM_



not modelled 47.1 24
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
92c5ijlA_



not modelled 46.2 24
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
93c1n0zA_



not modelled 45.5 64
PDB header:transcription
Chain: A: PDB Molecule:znf265;
PDBTitle: solution structure of the first zinc-finger domain from2 znf265
94c3mkrB_



not modelled 45.0 20
PDB header:transport protein
Chain: B: PDB Molecule:coatomer subunit alpha;
PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
95d2gnra1



not modelled 44.7 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:SSO2064-like
96d1t1ha_



not modelled 44.7 27
Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
97c3zg6A_



not modelled 44.5 16
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:nad-dependent protein deacetylase sirtuin-6;
PDBTitle: the novel de-long chain fatty acid function of human sirt6
98c3jb9T_



not modelled 44.2 19
PDB header:rna binding protein/rna
Chain: T: PDB Molecule:pre-mrna-processing factor 19;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
99c2f9iD_



not modelled 43.8 24
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
100c4me3A_



not modelled 43.4 20
PDB header:replication
Chain: A: PDB Molecule:dna replication licensing factor mcm related protein;
PDBTitle: 1.8 angstrom crystal structure of the n-terminal domain of an archaeal2 mcm
101c4pogC_



not modelled 43.4 24
PDB header:replication, dna binding protein/dna
Chain: C: PDB Molecule:cell division control protein 21;
PDBTitle: mcm-ssdna co-crystal structure
102c3o70A_



not modelled 42.7 20
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 13;
PDBTitle: phd-type zinc finger of human phd finger protein 13
103c3u5pF_



not modelled 42.6 27
PDB header:transcription
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase trim33;
PDBTitle: crystal structure of the complex of trim33 phd-bromo and h3(1-28)2 k9me3k14ack18ack23ac histone peptide
104c4a17Y_



not modelled 42.6 15
PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
105c5hh7A_



not modelled 42.4 19
PDB header:transcription
Chain: A: PDB Molecule:origin of replication complex subunit 1b;
PDBTitle: crystal structure of arabidopsis orc1b bah-phd cassette in complex2 with unmodified h3 peptide
106c5fz5M_



not modelled 42.2 24
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
107c2e61A_



not modelled 42.1 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger cw-type pwwp domain protein 1;
PDBTitle: solution structure of the zf-cw domain in zinc finger cw-type pwwp2 domain protein 1
108c2epsA_



not modelled 42.0 27
PDB header:transcription
Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing
PDBTitle: solution structure of the 4th zinc finger domain of zinc2 finger protein 278
109d1mm3a_



not modelled 41.6 26
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:PHD domain
110c2avuF_



not modelled 41.5 30
PDB header:transcription activator
Chain: F: PDB Molecule:flagellar transcriptional activator flhc;
PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
111c5jneA_



not modelled 40.3 40
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:e3 sumo-protein ligase siz1,ubiquitin-like protein smt3;
PDBTitle: e2-sumo-siz1 e3-sumo-pcna complex
112d2avue1



not modelled 40.2 30
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
113c6hmsB_



not modelled 40.1 24
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
114c4mvtC_



not modelled 39.8 40
PDB header:ligase
Chain: C: PDB Molecule:e3 sumo-protein ligase pias3;
PDBTitle: crystal structure of sumo e3 ligase pias3
115d1ffkw_



not modelled 39.7 25
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
116d1mm2a_



not modelled 39.6 33
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:PHD domain
117c3izrm_



not modelled 39.4 25
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
118c3a1bA_



not modelled 39.1 29
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a, histone h3.1;
PDBTitle: crystal structure of the dnmt3a add domain in complex with histone h3
119c3cc4Z_



not modelled 38.9 17
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
120c3wwnB_



not modelled 38.7 31
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite