Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3258c_(-)_3638808_3639299
DateThu Aug 8 16:20:46 BST 2019
Unique Job ID84273db5fcd5d40e
SequenceMRVSGASAAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.657 Y:40.773 Z:19.583
Model (left) based on template c3kysB_
Top template information
PDB header:transcription/protein binding
Chain: B: PDB Molecule:65 kda yes-associated protein;
PDBTitle: crystal structure of human yap and tead complex
Confidence and coverage
Confidence: 24.4% Coverage: 13%
22 residues ( 13% of your sequence) have been modelled with 24.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kysB_
24.4 41
PDB header:transcription/protein binding
Chain: B: PDB Molecule:65 kda yes-associated protein;
PDBTitle: crystal structure of human yap and tead complex
2c3j20E_
23.4 31
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s4e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
3d2r8oa2
22.1 29
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like PP module
4d1cw0a_
22.0 17
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
5c2xzmW_
21.5 35
PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s4;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
6d1bs0a_
21.3 24
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
7d1wjwa_
20.5 11
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
8c5xyiE_
20.3 46
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s4;
PDBTitle: small subunit of trichomonas vaginalis ribosome
9d1xbta2
17.5 29
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
10c3u5cE_
17.4 31
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s4-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
11c5xxuE_
16.8 38
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein es4;
PDBTitle: small subunit of toxoplasma gondii ribosome
12c3ahhA_
16.7 15
PDB header:lyase
Chain: A: PDB Molecule:xylulose 5-phosphate/fructose 6-phosphate phosphoketolase;
PDBTitle: h142a mutant of phosphoketolase from bifidobacterium breve complexed2 with acetyl thiamine diphosphate
13d1gpua1
15.7 27
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like PP module
14d1oi1a1
15.6 20
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
15c3r3pB_
15.2 8
PDB header:hydrolase
Chain: B: PDB Molecule:mobile intron protein;
PDBTitle: homing endonuclease i-bth0305i catalytic domain
16d1yf2a2
14.0 33
Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
17d2b8ta2
14.0 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
18c2kywA_
13.8 45
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion exoprotein;
PDBTitle: solution nmr structure of a domain of adhesion exoprotein from2 pediococcus pentosaceus, northeast structural genomics consortium3 target ptr41o
19c3hrlA_
12.5 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:endonuclease-like protein;
PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae
20c4o3vA_
12.2 18
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
21c5abvF_
not modelled 11.3 56
PDB header:translation
Chain: F: PDB Molecule:gh11071p;
PDBTitle: complex of d. melanogaster eif4e with the 4e-binding2 protein mextli
22c1xx6B_
not modelled 11.1 18
PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
23c2n5dA_
not modelled 10.9 44
PDB header:protein binding
Chain: A: PDB Molecule:fusion protein of two pks domains;
PDBTitle: nmr structure of pks domains
24c3nqjA_
not modelled 10.4 60
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of (cenp-a/h4)2 heterotetramer
25c2hueB_
not modelled 10.2 60
PDB header:dna binding protein
Chain: B: PDB Molecule:histone h3;
PDBTitle: structure of the h3-h4 chaperone asf1 bound to histones h3 and h4
26d1id3a_
not modelled 10.2 45
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
27c3nquA_
not modelled 9.9 55
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of partially trypsinized (cenp-a/h4)2 heterotetramer
28d1dw0a_
not modelled 9.8 36
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
29d1e8ga1
not modelled 9.4 33
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
30c2xcmE_
not modelled 9.2 26
PDB header:chaperone/protein binding
Chain: E: PDB Molecule:rar1;
PDBTitle: complex of hsp90 n-terminal, sgt1 cs and rar1 chord2 domain
31d1pvma3
not modelled 9.1 57
Fold:Rubredoxin-like
Superfamily:Hypothetical protein Ta0289 C-terminal domain
Family:Hypothetical protein Ta0289 C-terminal domain
32c2yfwC_
not modelled 9.1 60
PDB header:cell cycle
Chain: C: PDB Molecule:histone h3-like centromeric protein cse4;
PDBTitle: heterotetramer structure of kluyveromyces lactis cse4,h4
33c6hrhA_
not modelled 8.9 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:5-aminolevulinate synthase, erythroid-specific,
PDBTitle: structure of human erythroid-specific 5'-aminolevulinate synthase,2 alas2
34d1p3ie_
not modelled 8.7 60
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
35d1yf2a1
not modelled 8.6 40
Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
36c6e0cA_
not modelled 8.5 55
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: cryo-em structure of the cenp-a nucleosome (w601) in complex with a2 single chain antibody fragment
37d1w8oa1
not modelled 8.4 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
38c2hwkA_
not modelled 8.2 29
PDB header:hydrolase
Chain: A: PDB Molecule:helicase nsp2;
PDBTitle: crystal structure of venezuelan equine encephalitis alphavirus nsp22 protease domain
39d1eqzg_
not modelled 8.1 60
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
40d1r9ja2
not modelled 8.0 21
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like PP module
41d2f21a1
not modelled 7.9 45
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
42c3trkA_
not modelled 7.9 36
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
43c3okgB_
not modelled 7.9 56
PDB header:dna binding protein
Chain: B: PDB Molecule:restriction endonuclease s subunits;
PDBTitle: crystal structure of hsds subunit from thermoanaerobacter2 tengcongensis
44c2l5aA_
not modelled 7.9 60
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3,
PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3
45d1bhia_
not modelled 7.8 44
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
46c6nf8n_
not modelled 7.8 57
PDB header:ribosomal protein
Chain: N: PDB Molecule:28s ribosomal protein s14, mitochondrial;
PDBTitle: structure of human mitochondrial translation initiation factor 3 bound2 to the small ribosomal subunit -class i
47d1fc4a_
not modelled 7.7 16
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
48c5aj3n_
not modelled 7.6 50
PDB header:ribosome
Chain: N: PDB Molecule:mitoribosomal protein us14m, mrps14;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
49d1tzyc_
not modelled 7.5 55
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
50c2lb0A_
not modelled 7.3 50
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
51c2lazA_
not modelled 7.3 50
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
52c4k3vA_
not modelled 7.1 11
PDB header:transport protein
Chain: A: PDB Molecule:abc superfamily atp binding cassette transporter, binding
PDBTitle: structure of staphylococcus aureus mntc
53d1kx5a_
not modelled 7.1 60
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
54c5vrbB_
not modelled 7.1 26
PDB header:transferase
Chain: B: PDB Molecule:transketolase;
PDBTitle: crystal structure of a transketolase from neisseria gonorrhoeae
55c4wrnB_
not modelled 6.7 26
PDB header:structural protein
Chain: B: PDB Molecule:maltose-binding periplasmic protein,uromodulin;
PDBTitle: crystal structure of the polymerization region of human2 uromodulin/tamm-horsfall protein
56c6c23Q_
not modelled 6.6 20
PDB header:gene regulation
Chain: Q: PDB Molecule:polycomb protein suz12;
PDBTitle: cryo-em structure of prc2 bound to cofactors aebp2 and jarid2 in the2 compact active state
57d2uuyb1
not modelled 6.6 57
Fold:BPTI-like
Superfamily:BPTI-like
Family:Tick tryptase inhibitor-like
58c3nctC_
not modelled 6.6 33
PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
59d1gu2a_
not modelled 6.5 29
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
60c6c24Q_
not modelled 6.5 20
PDB header:gene regulation
Chain: Q: PDB Molecule:polycomb protein suz12;
PDBTitle: cryo-em structure of prc2 bound to cofactors aebp2 and jarid2 in the2 extended active state
61c3n3fB_
not modelled 6.4 21
PDB header:protein binding
Chain: B: PDB Molecule:collagen alpha-1(xv) chain;
PDBTitle: crystal structure of the human collagen xv trimerization domain: a2 potent trimerizing unit common to multiplexin collagens
62c3komB_
not modelled 6.4 35
PDB header:transferase
Chain: B: PDB Molecule:transketolase;
PDBTitle: crystal structure of apo transketolase from francisella tularensis
63c2uuxA_
not modelled 6.3 45
PDB header:inhibitor
Chain: A: PDB Molecule:tryptase inhibitor;
PDBTitle: structure of the tryptase inhibitor tdpi from a tick
64d1wjsa_
not modelled 6.3 21
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
65c3hshA_
not modelled 6.3 15
PDB header:protein binding
Chain: A: PDB Molecule:collagen alpha-1(xviii) chain;
PDBTitle: crystal structure of human collagen xviii trimerization domain2 (tetragonal crystal form)
66d2ieaa2
not modelled 6.1 17
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like PP module
67c5v6fA_
not modelled 6.1 23
PDB header:sugar binding protein
Chain: A: PDB Molecule:hemolysin-related protein;
PDBTitle: crystal structure of the second beta-prism domain of rbmc from v.2 cholerae bound to mannotriose
68d2ozla1
not modelled 5.9 19
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase PP module
69d1oz2a1
not modelled 5.9 13
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
70c2orvB_
not modelled 5.8 29
PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: human thymidine kinase 1 in complex with tp4a
71d1oz2a2
not modelled 5.7 21
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
72c5jayB_
not modelled 5.7 26
PDB header:transferase
Chain: B: PDB Molecule:8-amino-7-oxononanoate synthase;
PDBTitle: crystal structure of an 8-amino-7-oxononanoate synthase from2 burkholderia xenovorans
73d1umga_
not modelled 5.7 23
Fold:Sulfolobus fructose-1,6-bisphosphatase-like
Superfamily:Sulfolobus fructose-1,6-bisphosphatase-like
Family:Sulfolobus fructose-1,6-bisphosphatase-like
74c4cgbE_
not modelled 5.6 75
PDB header:cell cycle
Chain: E: PDB Molecule:echinoderm microtubule-associated protein-like 2;
PDBTitle: crystal structure of the trimerization domain of eml2
75d1wvfa1
not modelled 5.6 47
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
76c5h6sB_
not modelled 5.5 26
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase s179a mutant complexed with a2 substrate
77d1x64a2
not modelled 5.5 44
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
78c5n02B_
not modelled 5.4 18
PDB header:lyase
Chain: B: PDB Molecule:glutaconate coa-transferase family, subunit b;
PDBTitle: crystal structure of the decarboxylase aiba/aibb c56s variant
79c3hqtB_
not modelled 5.3 9
PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
80c3t2dA_
not modelled 5.3 29
PDB header:lyase, hydrolase
Chain: A: PDB Molecule:fructose-1,6-bisphosphate aldolase/phosphatase;
PDBTitle: fructose-1,6-bisphosphate aldolase/phosphatase from thermoproteus2 neutrophilus, fbp-bound form
81d2zjrl1
not modelled 5.3 75
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
82d1p5dx4
not modelled 5.3 31
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
83c3rimA_
not modelled 5.2 17
PDB header:transferase
Chain: A: PDB Molecule:transketolase;
PDBTitle: crystal structure of mycobacterium tuberculosis transketolase2 (rv1449c)
84c2kxqA_
not modelled 5.2 33
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf2;
PDBTitle: solution structure of smurf2 ww2 and ww3 bound to smad7 py motif2 containing peptide
85c5vobE_
not modelled 5.1 60
PDB header:viral protein/immune system
Chain: E: PDB Molecule:envelope glycoprotein ul131a;
PDBTitle: crystal structure of hcmv pentamer in complex with neutralizing2 antibody 8i21
86c2o1xA_
not modelled 5.1 17
PDB header:transferase
Chain: A: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from deinococcus2 radiodurans

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