Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3260c_(whiB2)_3639869_3640138
DateThu Aug 8 16:20:46 BST 2019
Unique Job ID72c948fa272b0eca
SequenceLVPEAPAPFE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.694 Y:30.429 Z:34.882
Model (left) based on template c5oayA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
Confidence and coverage
Confidence:100.0% Coverage: 76%
68 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5oayA_



100.0 47
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
2c4unfA_



43.0 44
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
3c4bjsC_



26.1 38
PDB header:cell cycle
Chain: C: PDB Molecule:telomere length regulator protein rif1;
PDBTitle: crystal structure of the rif1 c-terminal domain (rif1-ctd)2 from saccharomyces cerevisiae
4d2f62a1



23.6 14
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:N-deoxyribosyltransferase
5c2wj8N_



22.9 21
PDB header:rna binding protein/rna
Chain: N: PDB Molecule:nucleoprotein;
PDBTitle: respiratory syncitial virus ribonucleoprotein
6c1hjiB_



20.6 58
PDB header:bacteriophage hk022
Chain: B: PDB Molecule:nun-protein;
PDBTitle: bacteriophage hk022 nun-protein-nutboxb-rna complex
7d1rrqa1



20.5 29
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
8c1rrqA_



18.5 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
9c1vd3A_



18.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:rnase ngr3;
PDBTitle: ribonuclease nt in complex with 2'-ump
10c5fvcF_



17.9 18
PDB header:viral protein
Chain: F: PDB Molecule:hmpv nucleoprotein;
PDBTitle: structure of rna-bound decameric hmpv nucleoprotein
11d1orna_



17.7 38
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
12d1kg2a_



16.9 29
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
13c4uobA_



16.5 25
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
14c2pqxA_



15.4 29
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease i;
PDBTitle: e. coli rnase 1 (in vivo folded)
15d1keaa_



15.1 31
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
16c3saeA_



13.6 22
PDB header:lyase
Chain: A: PDB Molecule:alpha-bisabolene synthase;
PDBTitle: structure of a three-domain sesquiterpene synthase: a prospective2 target for advanced biofuels production
17c3pybB_



12.9 14
PDB header:isomerase
Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
18c6dx2A_



12.8 25
PDB header:hydrolase, protein binding
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from dera ghazi2 khan virus
19c3n5nX_



11.7 31
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
20c2ormA_



10.4 25
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
21c6f40P_



not modelled 9.2 0
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: rna polymerase iii open complex
22c3p5rB_



not modelled 9.1 22
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
23c5fj9P_



not modelled 9.0 8
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a
24c3gycB_



not modelled 8.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
25d2abka_



not modelled 7.9 30
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
26c3s9vD_



not modelled 7.9 33
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
27c3abfB_



not modelled 7.5 24
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242)
28d1otfa_



not modelled 7.4 24
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
29c2x4kB_



not modelled 7.3 18
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa)
30d1k1xa1



not modelled 7.3 35
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
31c1i8yA_



not modelled 7.2 40
PDB header:cytokine
Chain: A: PDB Molecule:granulin-1;
PDBTitle: semi-automatic structure determination of the cg1 3-302 peptide based on aria
32d1i8ya_



not modelled 7.2 40
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat
33c2ru1A_



not modelled 7.0 44
PDB header:hormone
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of esf3
34d1b4ua_



not modelled 7.0 8
Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
35c2mvnA_



not modelled 7.0 19
PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-delta;
PDBTitle: solution structure of eef1bdelta car domain in tctp-bound state
36c5m6qA_



not modelled 6.8 54
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kutzneria albida transglutaminase
37c3mb2G_



not modelled 6.8 24
PDB header:isomerase
Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
38c3j20T_



not modelled 6.7 54
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
39c4fazB_



not modelled 6.5 18
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate isomerase protein;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
40c2mvmA_



not modelled 6.4 19
PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-delta;
PDBTitle: solution structure of eef1bdelta car domain
41c4fdxB_



not modelled 6.4 18
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
42c2xzmS_



not modelled 6.1 54
PDB header:ribosome
Chain: S: PDB Molecule:rps15e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
43c2op8A_



not modelled 6.0 18
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
44d1dixa_



not modelled 5.9 35
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
45c3ry0A_



not modelled 5.7 24
PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
46d1bjpa_



not modelled 5.6 29
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
47c5xxuP_



not modelled 5.6 46
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
48c4bozA_



not modelled 5.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin thioesterase otu1;
PDBTitle: structure of otud2 otu domain in complex with k11-linked di ubiquitin
49c3j38P_



not modelled 5.4 46
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins

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