Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3262_(fbiB)_3641532_3642878
DateThu Aug 8 16:20:46 BST 2019
Unique Job ID2489a9fea5f0e2d3
SequenceLTGPEHGSAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.612 Y:59.346 Z:39.452
Model (left) based on template d2phna1
Top template information
Fold:CofE-like
Superfamily:CofE-like
Family:CofE-like
Confidence and coverage
Confidence:100.0% Coverage: 52%
235 residues ( 52% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
434 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2phna1
100.0 37
Fold:CofE-like
Superfamily:CofE-like
Family:CofE-like
2c4xomB_
100.0 100
PDB header:unknown function
Chain: B: PDB Molecule:coenzyme f420:l-glutamate ligase;
PDBTitle: coenzyme f420:l-glutamate ligase (fbib) from mycobacterium2 tuberculosis (c-terminal domain).
3c5heiE_
100.0 20
PDB header:oxidoreductase
Chain: E: PDB Molecule:nfra2;
PDBTitle: structure of b. megaterium nfra2
4c5hdjA_
100.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:nfra1;
PDBTitle: structure of b. megaterium nfra1
5c3n2sD_
100.0 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase;
PDBTitle: structure of nfra1 nitroreductase from b. subtilis
6c2islB_
100.0 20
PDB header:flavoprotein
Chain: B: PDB Molecule:blub;
PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form)
7d1zcha1
100.0 17
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
8c3eofB_
100.0 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution
9d1f5va_
100.0 20
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
10d2ifaa1
100.0 14
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
11d1bkja_
100.0 20
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
12c4eo3A_
100.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein/nadh dehydrogenase;
PDBTitle: peroxiredoxin nitroreductase fusion enzyme
13c5ko8B_
100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of haliscomenobacter hydrossis iodotyrosine2 deiodinase (iyd) bound to fmn and mono-iodotyrosine (i-tyr)
14c3eo8A_
100.0 21
PDB header:flavoprotein
Chain: A: PDB Molecule:blub-like flavoprotein;
PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution
15c2wqfA_
100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper induced nitroreductase d;
PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn
16d1ywqa1
100.0 18
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
17c2wzvB_
100.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
18c3k6hB_
100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58
19c3gh8A_
100.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:iodotyrosine dehalogenase 1;
PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit)
20c3gfaB_
100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (cd3205) from clostridium difficile 630 at 1.35 a resolution
21c3gr3B_
not modelled 100.0 19
PDB header:flavoprotein
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution
22c2hayD_
not modelled 100.0 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase;
PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas
23c2i7hE_
not modelled 100.0 20
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitroreductase-like family protein;
PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus
24c3ek3A_
not modelled 100.0 23
PDB header:flavoprotein
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution
25c3ge6B_
not modelled 100.0 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution
26d1vfra_
not modelled 100.0 15
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
27c3gagB_
not modelled 100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution
28d2b67a1
not modelled 100.0 16
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
29d1noxa_
not modelled 100.0 24
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
30c3pxvD_
not modelled 100.0 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution
31c3to0A_
not modelled 100.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:iodotyrosine deiodinase 1;
PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) c217a,2 c239a bound to fmn
32c3of4A_
not modelled 100.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution
33c4qlyB_
not modelled 100.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:enone reductase cla-er;
PDBTitle: crystal structure of cla-er, a novel enone reductase catalyzing a key2 step of a gut-bacterial fatty acid saturation metabolism,3 biohydrogenation
34c3gbhC_
not modelled 100.0 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase;
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution
35c6czpH_
not modelled 100.0 19
PDB header:oxidoreductase
Chain: H: PDB Molecule:oxygen-insensitive nad(p)h nitroreductase;
PDBTitle: 2.2 angstrom resolution crystal structure oxygen-insensitive nad(p)h-2 dependent nitroreductase nfsb from vibrio vulnificus in complex with3 fmn
36d1ykia1
not modelled 100.0 23
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
37c3bemA_
not modelled 100.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn;
PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution
38d2frea1
not modelled 100.0 21
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
39c3kwkA_
not modelled 100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase;
PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution
40c3m5kA_
not modelled 100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase;
PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution
41d1kqba_
not modelled 100.0 18
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
42c4dn2A_
not modelled 100.0 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of putative nitroreductase from geobacter2 metallireducens gs-15
43c3e10B_
not modelled 100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadh oxidase;
PDBTitle: crystal structure of putative nadh oxidase (np_348178.1) from2 clostridium acetobutylicum at 1.40 a resolution
44c3ge5A_
not modelled 100.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase;
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution
45c3e39A_
not modelled 100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution
46c3koqC_
not modelled 100.0 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution
47c2r01A_
not modelled 100.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution
48c3qdlD_
not modelled 100.0 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxygen-insensitive nadph nitroreductase;
PDBTitle: crystal structure of rdxa from helicobacter pyroli
49c5j62B_
not modelled 100.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative reductase;
PDBTitle: fmn-dependent nitroreductase (cdr20291_0684) from clostridium2 difficile r20291
50c5j6cA_
not modelled 100.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative reductase;
PDBTitle: fmn-dependent nitroreductase (cdr20291_0767) from clostridium2 difficile r20291
51c3g14B_
not modelled 100.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution
52c2h0uA_
not modelled 100.0 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-flavin oxidoreductase;
PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori
53c4urpB_
not modelled 100.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:fatty acid repression mutant protein 2;
PDBTitle: the crystal structure of nitroreductase from saccharomyces2 cerevisiae
54c3bm2B_
not modelled 100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein ydja;
PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor
55c3hj9A_
not modelled 100.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution
56c3hoiA_
not modelled 100.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017;
PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution
57c5lq4B_
not modelled 99.9 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:cyagox;
PDBTitle: the structure of thcox, the first oxidase protein from the cyanobactin2 pathways
58c3eo7A_
not modelled 99.9 22
PDB header:flavoprotein
Chain: A: PDB Molecule:putative nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution
59d1vkwa_
not modelled 99.8 25
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:Putative nitroreductase TM1586
60c2ymvA_
not modelled 99.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:acg nitroreductase;
PDBTitle: structure of reduced m smegmatis 5246, a homologue of m.2 tuberculosis acg
61c6gosC_
not modelled 99.5 11
PDB header:antibiotic/inhibitor
Chain: C: PDB Molecule:microcin b17-processing protein mcbc;
PDBTitle: e. coli microcin synthetase mcbbcd complex with pro-mccb17 bound
62c4ir1A_
not modelled 59.6 11
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase iv;
PDBTitle: polymerase-dna complex
63c2j89A_
not modelled 49.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
64c4db4A_
not modelled 44.5 37
PDB header:rna-binding protein/dna,rna
Chain: A: PDB Molecule:atp-dependent rna helicase mss116, mitochondrial;
PDBTitle: mss116p dead-box helicase domain 2 bound to a chimaeric rna-dna duplex
65d1oeyj_
not modelled 44.2 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
66d1srsa_
not modelled 43.3 13
Fold:SRF-like
Superfamily:SRF-like
Family:SRF-like
67d1mnma_
not modelled 41.6 13
Fold:SRF-like
Superfamily:SRF-like
Family:SRF-like
68d2oc6a1
not modelled 40.6 18
Fold:Secretion chaperone-like
Superfamily:YdhG-like
Family:YdhG-like
69c2bvtB_
not modelled 36.8 30
PDB header:hydrolase
Chain: B: PDB Molecule:beta-1,4-mannanase;
PDBTitle: the structure of a modular endo-beta-1,4-mannanase from cellulomonas2 fimi explains the product specificity of glycoside hydrolase family3 26 mannanases.
70d1egwa_
not modelled 36.4 17
Fold:SRF-like
Superfamily:SRF-like
Family:SRF-like
71c2z0mA_
not modelled 33.9 28
PDB header:rna binding protein
Chain: A: PDB Molecule:337aa long hypothetical atp-dependent rna
PDBTitle: crystal structure of hypothetical atp-dependent rna2 helicase from sulfolobus tokodaii
72d2i8da1
not modelled 33.9 16
Fold:Secretion chaperone-like
Superfamily:YdhG-like
Family:YdhG-like
73d2hiya1
not modelled 32.7 4
Fold:SP0830-like
Superfamily:SP0830-like
Family:SP0830-like
74c3pilA_
not modelled 32.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
75c3exsB_
not modelled 30.7 12
PDB header:lyase
Chain: B: PDB Molecule:rmpd (hexulose-6-phosphate synthase);
PDBTitle: crystal structure of kgpdc from streptococcus mutans in2 complex with d-r5p
76c3gyxJ_
not modelled 29.9 19
PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
77c4dciA_
not modelled 27.5 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of unknown funciton protein from synechococcus sp.2 wh 8102
78c3bqhA_
not modelled 27.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
79d1f52a1
not modelled 26.9 37
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Glutamine synthetase, N-terminal domain
Family:Glutamine synthetase, N-terminal domain
80d1n6ja_
not modelled 26.9 17
Fold:SRF-like
Superfamily:SRF-like
Family:SRF-like
81c4anrA_
not modelled 26.3 22
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
82d1hi9a_
not modelled 25.7 16
Fold:Dipeptide transport protein
Superfamily:Dipeptide transport protein
Family:Dipeptide transport protein
83c2ds2B_
not modelled 25.5 10
PDB header:plant protein
Chain: B: PDB Molecule:sweet protein mabinlin-2 chain b;
PDBTitle: crystal structure of mabinlin ii
84c3dmdA_
not modelled 24.8 25
PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
85c4ljyA_
not modelled 24.3 27
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-processing atp-dependent rna helicase prp5;
PDBTitle: crystal structure of rna splicing effector prp5 in complex with adp
86c1zu4A_
not modelled 24.1 12
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
87c6c48E_
not modelled 23.7 22
PDB header:cell cycle/dna binding
Chain: E: PDB Molecule:protein lin-52 homolog;
PDBTitle: crystal structure of b-myb-lin9-lin52 complex
88c1pnbB_
not modelled 23.4 14
PDB header:seed storage protein
Chain: B: PDB Molecule:napin bnib;
PDBTitle: structure of napin bnib, nmr, 10 structures
89d1j8yf2
not modelled 23.3 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
90c6nr2A_
not modelled 21.9 17
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
91c6nr2D_
not modelled 21.9 17
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
92c6nr2B_
not modelled 21.9 17
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
93c6nr2C_
not modelled 21.9 17
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
94c2kl4A_
not modelled 21.3 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2032 protein;
PDBTitle: nmr structure of the protein nb7804a
95c4euvA_
not modelled 21.1 18
PDB header:signaling protein
Chain: A: PDB Molecule:peld;
PDBTitle: crystal structure of peld 158-ct from pseudomonas aeruginosa pao1, in2 complex with c-di-gmp, form 1
96c3o8oC_
not modelled 20.4 17
PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
97c5ibzD_
not modelled 20.1 33
PDB header:lyase
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a novel cyclase (pfam04199).
98d1hyoa2
not modelled 19.6 34
Fold:FAH
Superfamily:FAH
Family:FAH
99d2v94a1
not modelled 19.4 12
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e

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Transmembrane helix prediction 

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