Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3267_(-)_3647882_3649378
DateThu Aug 8 16:20:47 BST 2019
Unique Job ID5fd62ec8339b6fc0
SequenceVMSAQRVVRT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.360 Y:48.361 Z:52.547
Model (left) based on template c3pe5B_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: three-dimensional structure of protein a7vv38_9clot from clostridium2 leptum dsm 753, northeast structural genomics consortium target3 qlr103
Confidence and coverage
Confidence:100.0% Coverage: 52%
261 residues ( 52% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
367 residues ( 74%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3pe5B_



100.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: three-dimensional structure of protein a7vv38_9clot from clostridium2 leptum dsm 753, northeast structural genomics consortium target3 qlr103
2c4de8A_



100.0 24
PDB header:membrane protein
Chain: A: PDB Molecule:cps2a;
PDBTitle: lytr-cps2a-psr family protein with bound octaprenyl monophosphate2 lipid
3c3okzB_



100.0 28
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
4c5v8cA_



100.0 26
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: lytr-csp2a-psr enzyme from actinomyces oris
5c3qfiA_



100.0 29
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (ef0465) from2 enterococcus faecalis, northeast structural genomics consortium3 target efr190
6c3owqB_



100.0 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin1025 protein;
PDBTitle: x-ray structure of lin1025 protein from listeria innocua, northeast2 structural genomics consortium target lkr164
7c3nroA_



100.0 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo1026 protein;
PDBTitle: crystal structure of putative transcriptional factor lmo1026 from2 listeria monocytogenes (fragment 52-321), northeast structural3 genomics consortium target lmr194
8c3mejA_



100.0 28
PDB header:transcriptional regulator
Chain: A: PDB Molecule:transcriptional regulator ywtf;
PDBTitle: crystal structure of putative transcriptional regulator ywtf from2 bacillus subtilis, northeast structural genomics consortium target3 sr736
9c4obmA_



100.0 13
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative transcription regulator (eubsir_01389)2 from eubacterium siraeum dsm 15702 at 2.15 a resolution
10c3nxhA_



100.0 24
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator yvhj;
PDBTitle: crystal structure of the transcriptional regulator yvhj from bacillus2 subtilis. northeast structural genomics consortium target sr735.
11c2m5yA_



99.5 22
PDB header:unknown function
Chain: A: PDB Molecule:putative tuberculin related peptide;
PDBTitle: solution structure of the c-terminal domain of rv0431
12c6dfdB_



43.7 31
PDB header:metal transport
Chain: B: PDB Molecule:metal transporter cnnm3;
PDBTitle: crystal structure of cnnm3 cyclic nucleotide-binding homology domain
13c2pjuD_



40.9 16
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
14c5j5vC_



40.7 36
PDB header:toxin
Chain: C: PDB Molecule:immunity protein cdii;
PDBTitle: cdia-ct from uropathogenic escherichia coli in complex with cognate2 immunity protein and cysk
15c3txsC_



26.5 13
PDB header:viral protein
Chain: C: PDB Molecule:terminase dna packaging enzyme small subunit;
PDBTitle: crystal structure of phage 44rr small terminase gp16
16c6dj3B_



23.5 33
PDB header:transport protein
Chain: B: PDB Molecule:metal transporter cnnm2;
PDBTitle: crystal structure of cnnm2 cyclic nucleotide-binding homology domain
17d1ny8a_



10.9 29
Fold:Alpha-lytic protease prodomain-like
Superfamily:BolA-like
Family:BolA-like
18c2liyA_



10.1 31
PDB header:hormone
Chain: A: PDB Molecule:epidermal patterning factor-like protein 9;
PDBTitle: plant peptide hormone regulating stomatal density
19c6f0kA_



9.6 13
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
20d1r2ja1



9.3 11
Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
21c3tr3A_



not modelled 9.3 26
PDB header:unknown function
Chain: A: PDB Molecule:bola;
PDBTitle: structure of a bola protein homologue from coxiella burnetii
22d1g4yb_



not modelled 9.2 10
Fold:Small-conductance potassium channel
Superfamily:Small-conductance potassium channel
Family:Small-conductance potassium channel
23c4ddpA_



not modelled 8.9 31
PDB header:membrane protein
Chain: A: PDB Molecule:beclin-1;
PDBTitle: crystal structure of beclin 1 evolutionarily conserved domain(ecd)
24c2xznT_



not modelled 8.8 13
PDB header:ribosome
Chain: T: PDB Molecule:rps19e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
25c6az1X_



not modelled 8.2 7
PDB header:ribosome/antibiotic
Chain: X: PDB Molecule:ribosomal protein s19e;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
26c4fw9A_



not modelled 8.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:ttc1975 peptidase;
PDBTitle: crystal structure of the lon-like protease mtalonc
27c2o8sA_



not modelled 8.1 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:agr_c_984p;
PDBTitle: x-ray crystal structure of protein agr_c_984 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr120.
28c4b96A_



not modelled 8.0 20
PDB header:sugar binding protein
Chain: A: PDB Molecule:cellulose binding domain-containing protein;
PDBTitle: family 3b carbohydrate-binding module from the biomass2 sensoring system of clostridium clariflavum
29d1gsoa2



not modelled 8.0 27
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
30d3etja2



not modelled 7.7 43
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
31c5e24D_



not modelled 7.3 17
PDB header:transport/dna binding/dna
Chain: D: PDB Molecule:protein hairless;
PDBTitle: structure of the su(h)-hairless-dna repressor complex
32c4hynA_



not modelled 7.2 13
PDB header:signaling protein
Chain: A: PDB Molecule:chec, inhibitor of mcp methylation / flin fusion protein;
PDBTitle: x-ray crystal structure of thermotoga maritima fliy
33d1xjca_



not modelled 7.0 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
34c4ymkA_



not modelled 6.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
35d2o8sa1



not modelled 6.7 30
Fold:AGR C 984p-like
Superfamily:AGR C 984p-like
Family:AGR C 984p-like
36c5z5bA_



not modelled 6.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase;
PDBTitle: crystal structure of tk-ptp in the g95a mutant form
37d1tf4a2



not modelled 6.6 40
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
38c4b9cA_



not modelled 6.3 30
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:type 3a cellulose-binding domain protein;
PDBTitle: biomass sensoring modules from putative rsgi-like proteins2 of clostridium thermocellum resemble family 3 carbohydrate-3 binding module of cellulosome
39d1nbca_



not modelled 6.2 50
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
40c5vo5A_



not modelled 6.1 12
PDB header:transport protein
Chain: A: PDB Molecule:coiled-coil and c2 domain-containing protein 1-like,
PDBTitle: crystal structure of lgd-shrub complex, single chain fusion
41d1vkza2



not modelled 6.1 18
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
42d2zjrw1



not modelled 6.1 13
Fold:Ribosomal protein L30p/L7e
Superfamily:Ribosomal protein L30p/L7e
Family:Ribosomal protein L30p/L7e
43c3o2eA_



not modelled 6.0 28
PDB header:unknown function
Chain: A: PDB Molecule:bola-like protein;
PDBTitle: crystal structure of a bol-like protein from babesia bovis
44c4puiA_



not modelled 5.8 22
PDB header:protein binding
Chain: A: PDB Molecule:sufe-like protein, chloroplastic;
PDBTitle: bola domain of sufe1 from arabidopsis thaliana
45d1j6ra_



not modelled 5.7 16
Fold:Methionine synthase activation domain-like
Superfamily:Methionine synthase activation domain-like
Family:Hypothetical protein TM0269
46d1vh4a_



not modelled 5.5 14
Fold:Single-stranded right-handed beta-helix
Superfamily:Stabilizer of iron transporter SufD
Family:Stabilizer of iron transporter SufD
47c2l8aA_



not modelled 5.5 40
PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: structure of a novel cbm3 lacking the calcium-binding site
48d1gwya_



not modelled 5.3 15
Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Anemone pore-forming cytolysin
49c5dfzD_



not modelled 5.3 26
PDB header:transferase
Chain: D: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
50c2nclA_



not modelled 5.2 28
PDB header:protein binding
Chain: A: PDB Molecule:bola-like protein 3;
PDBTitle: solution structure of bola3 from homo sapiens
51c1t0fC_



not modelled 5.2 22
PDB header:dna binding protein
Chain: C: PDB Molecule:transposon tn7 transposition protein tnsc;
PDBTitle: crystal structure of the tnsa/tnsc(504-555) complex

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below