Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3284_(-)_3665815_3666246
DateThu Aug 8 16:20:49 BST 2019
Unique Job ID7ac440a932a55171
SequenceMTAPASLPAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.144 Y:35.165 Z:42.596
Model (left) based on template d1mzga_
Top template information
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
Confidence and coverage
Confidence:100.0% Coverage: 92%
132 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1mzga_
100.0 17
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
2d1ni7a_
100.0 25
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
3c1wloA_
100.0 39
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sufe protein;
PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8
4d1r9pa_
94.7 15
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
5c4eb5C_
93.2 14
PDB header:transferase/metal binding protein
Chain: C: PDB Molecule:nifu protein (nifu-1);
PDBTitle: a. fulgidus iscs-iscu complex structure
6d1wfza_
87.5 15
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
7c2qq4A_
74.4 17
PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu;
PDBTitle: crystal structure of iron-sulfur cluster biosynthesis protein iscu2 (ttha1736) from thermus thermophilus hb8
8c2z7eB_
73.1 15
PDB header:biosynthetic protein
Chain: B: PDB Molecule:nifu-like protein;
PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster
9d1su0b_
73.0 15
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
10c5uftA_
68.2 12
PDB header:metal binding protein
Chain: A: PDB Molecule:nitrogen-fixing nifu-like, n-terminal;
PDBTitle: crystal structure of a nitrogen-fixing nifu-like protein (n-terminal)2 from brucella abortus
11d1xjsa_
67.4 13
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
12c4dztA_
65.5 16
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:aqualysin-1;
PDBTitle: aqualysin i: the crystal structure of a serine protease from an2 extreme thermophile, thermus aquaticus yt-1
13c4mzdA_
65.0 9
PDB header:hydrolase
Chain: A: PDB Molecule:nisin leader peptide-processing serine protease nisp;
PDBTitle: high resolution crystal structure of the nisin leader peptidase nisp2 from lactococcus lactis
14c3whiA_
64.6 11
PDB header:hydrolase
Chain: A: PDB Molecule:subtilisin e;
PDBTitle: crystal structure of unautoprocessed form of is1-inserted pro-2 subtilisin e
15c2pmwB_
63.2 20
PDB header:hydrolase
Chain: B: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9)
16c5vllA_
62.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: short pcsk9 delta-p' complex with peptide pep3
17c1s2nB_
59.8 12
PDB header:hydrolase
Chain: B: PDB Molecule:extracellular subtilisin-like serine proteinase;
PDBTitle: crystal structure of a cold adapted subtilisin-like serine proteinase
18c3f7oB_
59.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease;
PDBTitle: crystal structure of cuticle-degrading protease from paecilomyces2 lilacinus (pl646)
19c2b6nA_
58.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:proteinase k;
PDBTitle: the 1.8 a crystal structure of a proteinase k like enzyme from a2 psychrotroph serratia species
20c5z6oA_
57.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:protease;
PDBTitle: crystal structure of penicillium cyclopium protease
21c4tr2A_
not modelled 56.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:subtilisin-like 1 serine protease;
PDBTitle: crystal structure of pvsub1
22c2w2qA_
not modelled 55.6 20
PDB header:hydrolase/receptor
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: pcsk9-deltac d374h mutant bound to wt egf-a of ldlr
23c5vlpA_
not modelled 54.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: pcsk9 complex with ldlr antagonist peptide and fab7g7
24d1gcia_
not modelled 54.8 16
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
25d1pdaa2
not modelled 53.5 19
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
26c2iy9A_
not modelled 53.4 8
PDB header:toxin
Chain: A: PDB Molecule:suba;
PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli
27d1gnsa_
not modelled 52.9 11
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
28c2oxaA_
not modelled 51.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular serine protease;
PDBTitle: crystal structure of serine protease of aeromonas sobria
29c5yl7A_
not modelled 51.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:pseudoalteromonas arctica pamc 21717;
PDBTitle: proteases from pseudoalteromonas arctica pamc 21717 (pro21717)
30d1gtka2
not modelled 50.6 24
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
31c4j94A_
not modelled 50.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:membrane-anchored mycosin mycp1;
PDBTitle: crystal structure of mycp1 from the esx-1 type vii secretion system
32d1p8ja2
not modelled 48.7 16
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
33c3vv3B_
not modelled 48.6 12
PDB header:hydrolase
Chain: B: PDB Molecule:deseasin mcp-01;
PDBTitle: crystal structure of deseasin mcp-01 from pseudoalteromonas sp. sm9913
34d1r0re_
not modelled 47.7 16
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
35d1to2e_
not modelled 45.7 12
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
36c4kg7A_
not modelled 45.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase s8 and s53, subtilisin, kexin, sedolisin;
PDBTitle: structure of mycp3 protease from the type vii (esx-3) secretion2 system.
37d2id4a2
not modelled 44.7 19
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
38c4lvnA_
not modelled 44.5 16
PDB header:hydrolase/inhibitor/immune system
Chain: A: PDB Molecule:subtilisin-like serine protease;
PDBTitle: crystal structure of pfsub1-prodomain-nimp.m7 fab complex
39d2ixta1
not modelled 44.5 16
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
40d1v6ca_
not modelled 44.5 23
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
41c1r64A_
not modelled 42.1 19
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:kexin;
PDBTitle: the 2.2 a crystal structure of kex2 protease in complex with ac-arg-2 glu-lys-boroarg peptidyl boronic acid inhibitor
42c1p8jB_
not modelled 39.1 16
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:furin precursor;
PDBTitle: crystal structure of the proprotein convertase furin
43d1bh6a_
not modelled 37.0 16
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
44c4mlqA_
not modelled 32.9 18
PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: crystal structure of bacillus megaterium porphobilinogen deaminase
45c3bpsA_
not modelled 31.8 20
PDB header:hydrolase/lipid transport
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: pcsk9:egf-a complex
46d1nexa1
not modelled 31.3 4
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
47c3lpcA_
not modelled 29.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:aprb2;
PDBTitle: crystal structure of a subtilisin-like protease
48c2ypnA_
not modelled 29.3 24
PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase
49d1fs1b1
not modelled 27.2 9
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
50c4htgA_
not modelled 26.3 14
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:porphobilinogen deaminase, chloroplastic;
PDBTitle: porphobilinogen deaminase from arabidopsis thaliana
51d1fs2b1
not modelled 25.9 9
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
52c3eq1A_
not modelled 25.7 24
PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution
53c3qfhE_
not modelled 22.4 12
PDB header:hydrolase
Chain: E: PDB Molecule:epidermin leader peptide processing serine protease epip;
PDBTitle: 2.05 angstrom resolution crystal structure of epidermin leader peptide2 processing serine protease (epip) from staphylococcus aureus.
54d2pwaa1
not modelled 21.7 19
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
55d2ovra1
not modelled 18.9 9
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
56d1meea_
not modelled 18.7 16
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
57c3vtaB_
not modelled 18.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:cucumisin;
PDBTitle: crystal structure of cucumisin, a subtilisin-like endoprotease from2 cucumis melo l
58d1r6va_
not modelled 18.4 20
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
59d1wwia1
not modelled 18.0 22
Fold:Histone-fold
Superfamily:Histone-fold
Family:Bacterial histone-fold protein
60d1r4va_
not modelled 17.7 19
Fold:Histone-fold
Superfamily:Histone-fold
Family:Bacterial histone-fold protein
61c6mcjA_
not modelled 17.1 21
PDB header:protein binding
Chain: A: PDB Molecule:orange carotenoid-binding protein;
PDBTitle: structure of helical carotenoid protein 2 from fremyella diplosiphon
62c4odaD_
not modelled 16.7 29
PDB header:hydrolase/replication
Chain: D: PDB Molecule:dna polymerase processivity factor component a20;
PDBTitle: crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
63c4odaC_
not modelled 16.7 29
PDB header:hydrolase/replication
Chain: C: PDB Molecule:dna polymerase processivity factor component a20;
PDBTitle: crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
64d1n83a_
not modelled 14.7 9
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
65c3t41B_
not modelled 14.5 12
PDB header:hydrolase
Chain: B: PDB Molecule:epidermin leader peptide processing serine protease epip;
PDBTitle: 1.95 angstrom resolution crystal structure of epidermin leader peptide2 processing serine protease (epip) s393a mutant from staphylococcus3 aureus
66c3wozA_
not modelled 12.8 25
PDB header:structural protein
Chain: A: PDB Molecule:clip-associating protein 2;
PDBTitle: crystal structure of clasp2 tog domain (tog3)
67d1m98a1
not modelled 11.8 17
Fold:Orange carotenoid protein, N-terminal domain
Superfamily:Orange carotenoid protein, N-terminal domain
Family:Orange carotenoid protein, N-terminal domain
68c2kvhA_
not modelled 11.1 35
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
69c3cuoB_
not modelled 11.0 19
PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
70c4zoqM_
not modelled 10.0 20
PDB header:hydrolase
Chain: M: PDB Molecule:intracellular serine protease;
PDBTitle: crystal structure of a lanthipeptide protease
71d1pq9a_
not modelled 10.0 14
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
72c2hc4A_
not modelled 9.8 15
PDB header:gene regulation
Chain: A: PDB Molecule:vitamin d receptor;
PDBTitle: crystal structure of the lbd of vdr of danio rerio in2 complex with calcitriol
73c6cw3F_
not modelled 9.7 33
PDB header:gene regulation
Chain: F: PDB Molecule:histone acetyltransferase gcn5;
PDBTitle: crystal structure of a yeast saga transcriptional coactivator2 ada2/gcn5 hat subcomplex, crystal form 2
74c5o1mA_
not modelled 9.6 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
75c4h08A_
not modelled 9.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of a putative hydrolase (bt3161) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution
76c3i74B_
not modelled 9.6 32
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:subtilisin-like protease;
PDBTitle: crystal structure of the plant subtilisin-like protease sbt3 in2 complex with a chloromethylketone inhibitor
77c2hl7A_
not modelled 9.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
78c2mn4A_
not modelled 8.1 25
PDB header:de novo protein
Chain: A: PDB Molecule:computational designed protein based on structure template
PDBTitle: nmr solution structure of a computational designed protein based on2 structure template 1cy5
79d1dbia_
not modelled 7.9 17
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
80d2g84a1
not modelled 7.9 16
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
81c3lbdA_
not modelled 7.7 15
PDB header:nuclear receptor
Chain: A: PDB Molecule:retinoic acid receptor gamma;
PDBTitle: ligand-binding domain of the human retinoic acid receptor gamma bound2 to 9-cis retinoic acid
82d1osva_
not modelled 7.6 18
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
83d1n46a_
not modelled 7.6 15
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
84c4ozrE_
not modelled 7.3 29
PDB header:transcription
Chain: E: PDB Molecule:ecdysone receptor;
PDBTitle: crystal structure of the ligand binding domains of the bovicola ovis2 ecdysone receptor ecr/usp heterodimer (methylene lactam crystal)
85d1ie9a_
not modelled 7.1 12
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
86c4nn7A_
not modelled 7.0 50
PDB header:cytokine/cytokine receptor
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: cytokine receptor complex - crystal form 2
87d2zmia1
not modelled 6.8 9
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
88d1i36a1
not modelled 6.8 27
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Conserved hypothetical protein MTH1747
89c3l0jA_
not modelled 6.6 15
PDB header:transcription
Chain: A: PDB Molecule:nuclear receptor ror-gamma;
PDBTitle: crystal structure of orphan nuclear receptor rorgamma in complex with2 natural ligand
90c3dm5A_
not modelled 6.5 26
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling the2 ribonucleic core of the signal recognition particle from the archaeon3 pyrococcus furiosus.
91c6f9mA_
not modelled 6.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:serine protease;
PDBTitle: the lipy/f-motif in an intracellular subtilisin protease is involved2 in inhibition
92c2qw4D_
not modelled 6.5 14
PDB header:hormone receptor
Chain: D: PDB Molecule:orphan nuclear receptor nr4a1;
PDBTitle: human nr4a1 ligand-binding domain
93c2nogA_
not modelled 6.4 15
PDB header:dna binding protein
Chain: A: PDB Molecule:iswi protein;
PDBTitle: sant domain structure of xenopus remodeling factor iswi
94c4j8cB_
not modelled 6.3 8
PDB header:chaperone
Chain: B: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
95c4j8cA_
not modelled 6.3 8
PDB header:chaperone
Chain: A: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
96c5j12A_
not modelled 6.1 38
PDB header:signaling protein
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: structure of human tslp:tslpr in complex with mouse il-7ralpha
97d2r40d1
not modelled 6.1 24
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
98c4trkA_
not modelled 5.8 18
PDB header:dna binding protein
Chain: A: PDB Molecule:c. elegans him-3;
PDBTitle: structure of c. elegans him-3
99c3bc5A_
not modelled 5.8 20
PDB header:transcription
Chain: A: PDB Molecule:peroxisome proliferator-activated receptor gamma;
PDBTitle: x-ray crystal structure of human ppar gamma with 2-(5-(3-(2-(5-methyl-2 2-phenyloxazol-4-yl)ethoxy)benzyl)-2-phenyl-2h-1,2,3-triazol-4-yl)3 acetic acid

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