Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3297_(nei)_3681317_3682084
DateThu Aug 8 16:20:50 BST 2019
Unique Job IDc9e82c7131eff0cc
SequenceMPEGDTVWHT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.605 Y:56.301 Z:52.838
Model (left) based on template c1k82D_
Top template information
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
Confidence and coverage
Confidence:100.0% Coverage: 99%
252 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1k82D_
100.0 25
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
2c2f5qA_
100.0 27
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
3c1nnjA_
100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
4c3twkB_
100.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase 1;
PDBTitle: crystal structure of arabidopsis thaliana fpg
5c1ee8A_
100.0 28
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
6c2opfA_
100.0 25
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
7c3a46B_
100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of mvnei1/thf complex
8c3w0fA_
100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
9c4mb7A_
100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like l720;
PDBTitle: crystal structure of a viral dna glycosylase
10c1tdhA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:nei endonuclease viii-like 1;
PDBTitle: crystal structure of human endonuclease viii-like 1 (neil1)
11c5ituB_
100.0 20
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:endonuclease 8-like 1;
PDBTitle: crystal structure of human neil1(242k) bound to duplex dna containing2 thf
12d1k82a2
100.0 22
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
13d1r2za2
100.0 20
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
14d1k3xa1
99.9 24
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
15d1tdza2
99.9 22
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
16d1ee8a2
99.9 25
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
17d1k82a1
99.9 22
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
18d1r2za1
99.9 28
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
19d1ee8a1
99.9 29
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
20d1tdza1
99.9 21
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
21d1k3xa2
not modelled 99.9 23
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
22d1tdha2
not modelled 99.8 14
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
23d1tdha1
not modelled 99.8 28
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
24d1ee8a3
not modelled 99.6 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
25d1tdza3
not modelled 99.6 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
26d1r2za3
not modelled 99.6 39
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
27d1k82a3
not modelled 99.6 36
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
28d1l1ta3
not modelled 99.6 45
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
29d2hkja1
not modelled 99.5 18
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Topoisomerase VI-B subunit middle domain
30d1k3xa3
not modelled 99.5 47
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
31d2uubm1
not modelled 95.7 24
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
32c3doaA_
not modelled 95.4 14
PDB header:protein binding
Chain: A: PDB Molecule:fibrinogen binding protein;
PDBTitle: the crystal structure of the fibrinogen binding protein from2 staphylococcus aureus
33d2gy9m1
not modelled 95.2 18
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
34c3iz6M_
not modelled 95.0 16
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
35c2zkqm_
not modelled 94.9 20
PDB header:ribosomal protein/rna
Chain: M: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
36c5o5jM_
not modelled 94.7 29
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s13;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
37c2xznM_
not modelled 94.6 22
PDB header:ribosome
Chain: M: PDB Molecule:rps18e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
38c3j20O_
not modelled 94.3 24
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
39d1i94m_
not modelled 94.2 24
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
40c5xyiS_
not modelled 93.8 18
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s13p/s18e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
41c3zeyM_
not modelled 91.8 18
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
42c5mmjm_
not modelled 90.9 13
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
43c5h3xA_
not modelled 90.7 17
PDB header:cell adhesion
Chain: A: PDB Molecule:fibronectin/fibrinogen binding protein;
PDBTitle: the structure of the n-terminal of the fibronectin/fibrinogen-binding2 protein from streptococcus suis (fbps)
44c2gb5B_
not modelled 89.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
45c4rulA_
not modelled 86.3 29
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of full-length e.coli topoisomerase i in complex2 with ssdna
46c2m6nA_
not modelled 83.0 30
PDB header:cell cycle
Chain: A: PDB Molecule:f-box only protein 5;
PDBTitle: 3d solution structure of emi1 (early mitotic inhibitor 1)
47c6i52C_
not modelled 81.2 17
PDB header:dna binding protein
Chain: C: PDB Molecule:replication factor a protein 1;
PDBTitle: yeast rpa bound to ssdna
48c2jneA_
not modelled 78.8 21
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein yfgj;
PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound. northeast2 structural genomics consortium target er317.
49d2jnea1
not modelled 78.8 21
Fold:Rubredoxin-like
Superfamily:YfgJ-like
Family:YfgJ-like
50c2jrpA_
not modelled 77.8 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
51c4gopC_
not modelled 77.7 26
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna
52c4ui9S_
not modelled 77.6 26
PDB header:cell cycle
Chain: S: PDB Molecule:f-box only protein 5;
PDBTitle: atomic structure of the human anaphase-promoting complex
53c5f4tA_
not modelled 76.5 32
PDB header:cell adhesion
Chain: A: PDB Molecule:izumo sperm-egg fusion protein 1;
PDBTitle: crystal structure of the human sperm izumo1 residues 22-254
54c6o3pA_
not modelled 75.5 9
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
55c3u50C_
not modelled 75.0 24
PDB header:dna binding protein
Chain: C: PDB Molecule:telomerase-associated protein 82;
PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-c
56c6ifsB_
not modelled 73.7 5
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: ksga from bacillus subtilis 168
57c4gc5A_
not modelled 72.7 11
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase 1, mitochondrial;
PDBTitle: crystal structure of murine tfb1m
58d2fiya1
not modelled 72.0 20
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
59d1l1oc_
not modelled 71.4 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
60c5b5kA_
not modelled 71.2 32
PDB header:cell adhesion
Chain: A: PDB Molecule:izumo sperm-egg fusion protein 1;
PDBTitle: crystal structure of izumo1, the mammalian sperm ligand for egg juno
61c2lcqA_
not modelled 70.5 19
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
62d1qyra_
not modelled 67.4 19
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
63d1pfta_
not modelled 65.6 24
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
64c6f5zC_
not modelled 65.3 8
PDB header:transferase
Chain: C: PDB Molecule:upf0434 family protein;
PDBTitle: complex between the haloferax volcanii trm112 methyltransferase2 activator and the hvo_0019 putative methyltransferase
65c5fywW_
not modelled 65.3 24
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
66c2kpiA_
not modelled 63.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sco3027;
PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
67c5ijlA_
not modelled 62.5 41
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
68c2owoA_
not modelled 62.2 21
PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
69d1qf8a_
not modelled 62.0 31
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
70c3wwnB_
not modelled 61.8 21
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
71c1dgsB_
not modelled 61.7 30
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
72d1vd4a_
not modelled 61.5 33
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
73c2js4A_
not modelled 60.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
74c3bbnM_
not modelled 60.0 10
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein s13;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
75c3na7A_
not modelled 59.2 23
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
76c2jr6A_
not modelled 57.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
77c3kp9A_
not modelled 56.5 60
PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
78c5oqmW_
not modelled 55.8 24
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
79c3fteA_
not modelled 55.4 13
PDB header:transferase/rna
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of a. aeolicus ksga in complex with rna
80c5oqjW_
not modelled 55.2 24
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
81c5d5hA_
not modelled 55.1 17
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of mycobacterium tuberculosis topoisomerase i
82d2f4ma1
not modelled 55.1 27
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
83c2riqA_
not modelled 54.6 19
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: crystal structure of the third zinc-binding domain of human parp-1
84c2hr5B_
not modelled 54.4 30
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
85d2avue1
not modelled 54.1 20
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
86d1odha_
not modelled 53.8 13
Fold:GCM domain
Superfamily:GCM domain
Family:GCM domain
87c3fuxB_
not modelled 53.6 18
PDB header:transferase
Chain: B: PDB Molecule:dimethyladenosine transferase;
PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121
88c4opxD_
not modelled 53.5 19
PDB header:transferase/dna/transferase inhibitor
Chain: D: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: structure of human parp-1 bound to a dna double strand break in2 complex with (2r)-5-fluoro-2-methyl-2,3-dihydro-1-benzofuran-7-3 carboxamide
89c5fmfR_
not modelled 53.4 24
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
90c4itqA_
not modelled 52.9 19
PDB header:gene regulation, structural protein/dna
Chain: A: PDB Molecule:putative uncharacterized protein sco1480;
PDBTitle: crystal structure of hypothetical protein sco1480 bound to dna
91c1dvbA_
not modelled 52.6 38
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
92c4kblA_
not modelled 52.5 23
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: structure of hhari, a ring-ibr-ring ubiquitin ligase: autoinhibition2 of an ariadne-family e3 and insights into ligation mechanism
93d1jwhc_
not modelled 52.0 31
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
94c6hmsB_
not modelled 51.8 47
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
95d2akla2
not modelled 51.7 26
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
96c4u3eA_
not modelled 51.5 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
97c4kisA_
not modelled 50.9 17
PDB header:recombination/dna
Chain: A: PDB Molecule:putative integrase [bacteriophage a118];
PDBTitle: crystal structure of a lsr-dna complex
98c4glxA_
not modelled 50.5 17
PDB header:ligase/ligase inhibitor/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: dna ligase a in complex with inhibitor
99c1yuzB_
not modelled 50.5 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
100c2avuF_
not modelled 50.4 20
PDB header:transcription activator
Chain: F: PDB Molecule:flagellar transcriptional activator flhc;
PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
101d2jnya1
not modelled 50.0 9
Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
102d2i0za2
not modelled 49.4 17
Fold:HI0933 insert domain-like
Superfamily:HI0933 insert domain-like
Family:HI0933 insert domain-like
103c2jvnA_
not modelled 48.9 19
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: domain c of human parp-1
104d2k4xa1
not modelled 48.3 36
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
105c6gymW_
not modelled 48.2 24
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
106c3eg9B_
not modelled 48.0 27
PDB header:protein transport
Chain: B: PDB Molecule:sec24 related gene family, member d;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23/24 bound2 to the transport signal sequence of membrin
107c6erpJ_
not modelled 47.7 8
PDB header:transcription
Chain: J: PDB Molecule:dimethyladenosine transferase 2, mitochondrial;
PDBTitle: structure of the human mitochondrial transcription initiation complex2 at the lsp promoter
108d2pk7a1
not modelled 46.3 8
Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
109c2mvwA_
not modelled 45.3 35
PDB header:metal binding protein
Chain: A: PDB Molecule:protein pml;
PDBTitle: solution structure of the trim19 b-box1 (b1) of human promyelocytic2 leukemia (pml)
110c1pd0A_
not modelled 45.1 27
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5)
111d1twfi2
not modelled 44.9 21
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
112d1dl6a_
not modelled 44.2 22
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
113d1qypa_
not modelled 44.1 26
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
114d1ctla1
not modelled 43.9 45
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
115d2hf1a1
not modelled 43.7 17
Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
116c6g5iy_
not modelled 43.3 13
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
117d2ct7a1
not modelled 43.1 29
Fold:RING/U-box
Superfamily:RING/U-box
Family:IBR domain
118d2b9da1
not modelled 43.0 30
Fold:E7 C-terminal domain-like
Superfamily:E7 C-terminal domain-like
Family:E7 C-terminal domain-like
119c2m48A_
not modelled 42.4 23
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: solution structure of ibr-ring2 tandem domain from parkin
120c3uzuA_
not modelled 42.2 11
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite