Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3312A_(-)_3700876_3701187
DateThu Aug 8 16:20:52 BST 2019
Unique Job ID8a3045a9f05c6d51
SequenceMYRFACRTLM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:12.860 Y:14.989 Z:13.707
Model (left) based on template c1pgsA_
Top template information
PDB header:endoglycosidase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-d-glucosaminyl)
PDBTitle: the three-dimensional structure of pngase f, a2 glycosylasparaginase from flavobacterium meningosepticum
Confidence and coverage
Confidence: 48.3% Coverage: 9%
9 residues ( 9% of your sequence) have been modelled with 48.3% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1pgsA_



48.3 44
PDB header:endoglycosidase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-d-glucosaminyl)
PDBTitle: the three-dimensional structure of pngase f, a2 glycosylasparaginase from flavobacterium meningosepticum
2d1pgsa2



34.3 63
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:PHM/PNGase F
Family:Glycosyl-asparaginase
3c6mizC_



27.4 23
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: human trpm2 ion channel in an adpr-bound state
4c3ks7D_



25.0 56
PDB header:hydrolase
Chain: D: PDB Molecule:putative putative pngase f;
PDBTitle: crystal structure of putative peptide:n-glycosidase f (pngase f)2 (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a3 resolution
5c4m1xB_



15.9 54
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein 201phi2-1p060;
PDBTitle: tetrameric ring structure of 201phi2-1p060 from pseudomonas phage2 201phi2-1
6d1dkga1



15.0 30
Fold:Head domain of nucleotide exchange factor GrpE
Superfamily:Head domain of nucleotide exchange factor GrpE
Family:Head domain of nucleotide exchange factor GrpE
7c3lnoA_



13.2 22
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis
8c1dkgB_



13.2 30
PDB header:complex (hsp24/hsp70)
Chain: B: PDB Molecule:nucleotide exchange factor grpe;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
9c3oruA_



12.5 23
PDB header:metal binding protein
Chain: A: PDB Molecule:duf1989 family protein;
PDBTitle: crystal structure of a duf1989 family protein (tm1040_0329) from2 silicibacter sp. tm1040 at 1.11 a resolution
10d1q33a_



12.2 31
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
11d2ccya_



10.9 44
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
12c1iyjC_



10.0 44
PDB header:gene regulation/antitumor protein
Chain: C: PDB Molecule:deleted in split hand/split foot protein 1;
PDBTitle: structure of a brca2-dss1 complex
13d1g7ea_



9.3 6
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ERP29 N domain-like
14c6gvwJ_



8.6 67
PDB header:signaling protein
Chain: J: PDB Molecule:brca1-a complex subunit rap80;
PDBTitle: crystal structure of the brca1-a complex
15c2jobA_



8.5 44
PDB header:lipid binding protein
Chain: A: PDB Molecule:antilipopolysaccharide factor;
PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site
16c4ulvB_



8.0 50
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c, class ii;
PDBTitle: cytochrome c prime from shewanella frigidimarina
17c6a3kA_



7.5 50
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of cytochrome c' from shewanella benthica db6705
18c2nasA_



6.8 33
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of a pwwp doamin from trypanosoma brucei
19c3t5xB_



6.8 50
PDB header:transcription
Chain: B: PDB Molecule:26s proteasome complex subunit dss1;
PDBTitle: pcid2:dss1 structure
20c4aniA_



6.1 63
PDB header:chaperone
Chain: A: PDB Molecule:protein grpe;
PDBTitle: structural basis for the intermolecular communication between2 dnak and grpe in the dnak chaperone system from3 geobacillus kaustophilus hta426
21c1dmlD_



not modelled 5.9 37
PDB header:dna binding protein/transferase
Chain: D: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
22c1dmlB_



not modelled 5.9 37
PDB header:dna binding protein/transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
23c1dmlF_



not modelled 5.8 37
PDB header:dna binding protein/transferase
Chain: F: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
24c1dmlH_



not modelled 5.8 37
PDB header:dna binding protein/transferase
Chain: H: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
25d1lcsa_



not modelled 5.6 50
Fold:ENV polyprotein, receptor-binding domain
Superfamily:ENV polyprotein, receptor-binding domain
Family:ENV polyprotein, receptor-binding domain
26d1qmga2



not modelled 5.3 36
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
27c3t5vC_



not modelled 5.2 50
PDB header:transcription
Chain: C: PDB Molecule:26s proteasome complex subunit sem1;
PDBTitle: sac3:thp1:sem1 complex

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