Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3315c_(cdd)_3703635_3704036
DateThu Aug 8 16:20:52 BST 2019
Unique Job IDd83a172193558129
SequenceMPDVDWNMLR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.237 Y:34.263 Z:37.622
Model (left) based on template d1uwza_
Top template information
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
Confidence and coverage
Confidence:100.0% Coverage: 94%
125 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1uwza_



100.0 36
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
2c3ijfX_



100.0 100
PDB header:hydrolase
Chain: X: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis
3d1r5ta_



100.0 32
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
4d2fr5a1



100.0 39
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
5d1mq0a_



100.0 37
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
6c3r2nC_



100.0 58
PDB header:hydrolase
Chain: C: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae
7d2d30a1



100.0 42
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
8c3dmoD_



100.0 44
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from burkholderia2 pseudomallei
9c3b8fB_



100.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
10c3oj6C_



100.0 35
PDB header:hydrolase
Chain: C: PDB Molecule:blasticidin-s deaminase;
PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis
11c1alnA_



100.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
12c4eg2G_



100.0 30
PDB header:hydrolase
Chain: G: PDB Molecule:cytidine deaminase;
PDBTitle: 2.2 angstrom crystal structure of cytidine deaminase from vibrio2 cholerae in complex with zinc and uridine
13d2z3ga1



100.0 32
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
14d1alna1



100.0 31
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
15d1alna2



100.0 21
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
16c4p9eA_



98.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from the cyanophage s-tim5 in apo2 form
17c2hvwC_



98.3 26
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from streptococcus mutans
18c5jfyC_



98.2 17
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidine deaminase;
PDBTitle: crystal structure of a plant cytidine deaminase
19c5xkrA_



98.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:cmp/dcmp deaminase, zinc-binding protein;
PDBTitle: crystal structure of msmeg3575 in complex with benzoguanamine
20d1wkqa_



98.1 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
21d1p6oa_



not modelled 98.0 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
22c2w4lC_



not modelled 98.0 24
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: human dcmp deaminase
23c3ocqA_



not modelled 97.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytosine/adenosine deaminase;
PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica
24d1z3aa1



not modelled 97.8 15
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
25d1wwra1



not modelled 97.8 17
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
26d2b3ja1



not modelled 97.8 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
27c2o7pA_



not modelled 97.6 17
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
28d2g84a1



not modelled 97.5 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
29d2a8na1



not modelled 97.5 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
30c2nx8A_



not modelled 97.3 12
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
31c2hxvA_



not modelled 97.3 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-
PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution
32d1vq2a_



not modelled 97.2 22
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
33d2hxva2



not modelled 97.2 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
34c3zpgA_



not modelled 97.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:ribd;
PDBTitle: acinetobacter baumannii ribd, form 2
35c2d5nB_



not modelled 96.6 16
PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
36d2b3za2



not modelled 96.3 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
37c3dh1D_



not modelled 96.1 17
PDB header:hydrolase
Chain: D: PDB Molecule:trna-specific adenosine deaminase 2;
PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2
38d3d37a2



not modelled 44.6 23
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
39c2gacD_



not modelled 35.0 14
PDB header:hydrolase
Chain: D: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
40c2eqjA_



not modelled 30.5 33
PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
41d2eppa1



not modelled 25.4 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42c2eppA_



not modelled 23.0 36
PDB header:transcription
Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing
PDBTitle: solution structure of the first c2h2 type zinc finger2 domain of zinc finger protein 278
43c3trkA_



not modelled 21.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
44c5lf9A_



not modelled 20.9 21
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 22;
PDBTitle: crystal structure of human nudt22
45c2f42A_



not modelled 20.7 28
PDB header:chaperone
Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1;
PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein
46c5cm2M_



not modelled 19.0 27
PDB header:transferase
Chain: M: PDB Molecule:trna methyltransferase activator subunit;
PDBTitle: insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
47c2kreA_



not modelled 18.2 33
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b;
PDBTitle: solution structure of e4b/ufd2a u-box domain
48c6g4wr_



not modelled 16.4 27
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
49c1apzB_



not modelled 16.1 11
PDB header:complex (hydrolase/peptide)
Chain: B: PDB Molecule:aspartylglucosaminidase;
PDBTitle: human aspartylglucosaminidase complex with reaction product
50d2pg3a1



not modelled 15.4 29
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
51c4m90A_



not modelled 15.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:tumor suppressor candidate 3;
PDBTitle: crystal structure of oxidized hn33/tusc3
52c6dnuB_



not modelled 15.3 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:thiol:disulfide interchange protein dsbd;
PDBTitle: crystal structure of neisseria meningitidis dsbd c-terminal domain in2 the oxidised form
53c3dmlA_



not modelled 14.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the periplasmic thioredoxin soxs from paracoccus2 pantotrophus (reduced form)
54d1ua4a_



not modelled 14.2 36
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:ADP-specific Phosphofructokinase/Glucokinase
55c2j6aA_



not modelled 14.1 27
PDB header:transferase
Chain: A: PDB Molecule:protein trm112;
PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex.
56d1r2za1



not modelled 14.0 10
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
57d1no1a_



not modelled 13.4 36
Fold:Replisome organizer (g39p helicase loader/inhibitor protein)
Superfamily:Replisome organizer (g39p helicase loader/inhibitor protein)
Family:Replisome organizer (g39p helicase loader/inhibitor protein)
58d1sjya_



not modelled 13.4 23
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
59c3cwfA_



not modelled 13.3 33
PDB header:transferase
Chain: A: PDB Molecule:alkaline phosphatase synthesis sensor protein phor;
PDBTitle: crystal structure of pas domain of two-component sensor histidine2 kinase
60d2djja1



not modelled 13.2 27
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
61c4pv3D_



not modelled 13.0 17
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
62c3gwnA_



not modelled 12.9 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable fad-linked sulfhydryl oxidase r596;
PDBTitle: crystal structure of the fad binding domain from mimivirus sulfhydryl2 oxidase r596
63c1q5rD_



not modelled 12.8 20
PDB header:hydrolase
Chain: D: PDB Molecule:proteasome alpha-type subunit 1;
PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides
64d1q5qa_



not modelled 12.8 20
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
65c4wz1B_



not modelled 12.7 17
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase lubx;
PDBTitle: crystal structure of u-box 2 of lubx / legu2 / lpp2887 from legionella2 pneumophila str. paris, wild-type
66d1r0ka3



not modelled 12.5 7
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
67c2knnA_



not modelled 12.4 80
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin-o2;
PDBTitle: solution structure of the cyclotide cycloviolacin o2 with2 glu6 methylated (cyo2me)
68c3gwlB_



not modelled 12.4 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:fad-linked sulfhydryl oxidase;
PDBTitle: crystal structure of asfv pb119l, a viral sulfhydryl oxidase
69c3p8dB_



not modelled 12.3 26
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
70c1no1C_



not modelled 12.2 36
PDB header:replication
Chain: C: PDB Molecule:replisome organizer;
PDBTitle: structure of truncated variant of b.subtilis spp1 phage g39p helicase2 loader/inhibitor protein
71c2ldmA_



not modelled 12.0 26
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
72d1l5ja3



not modelled 12.0 12
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
73c3htkC_



not modelled 12.0 10
PDB header:recombination/replication/ligase
Chain: C: PDB Molecule:e3 sumo-protein ligase mms21;
PDBTitle: crystal structure of mms21 and smc5 complex
74c3jugA_



not modelled 11.6 38
PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
75c3g9bA_



not modelled 11.2 18
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein
PDBTitle: crystal structure of reduced ost6l
76d1jr8a_



not modelled 11.0 33
Fold:Four-helical up-and-down bundle
Superfamily:FAD-dependent thiol oxidase
Family:FAD-dependent thiol oxidase
77c2ppvA_



not modelled 11.0 21
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution
78c5hkqA_



not modelled 10.7 16
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: crystal structure of cdi complex from escherichia coli stec_o31
79c4e6kI_



not modelled 10.6 16
PDB header:metal binding protein/electron transport
Chain: I: PDB Molecule:bacterioferritin-associated ferredoxin;
PDBTitle: 2.0 a resolution structure of pseudomonas aeruginosa bacterioferritin2 (bfrb) in complex with bacterioferritin associated ferredoxin (bfd)
80c2r2jA_



not modelled 10.2 9
PDB header:chaperone
Chain: A: PDB Molecule:thioredoxin domain-containing protein 4;
PDBTitle: crystal structure of human erp44
81d1sena_



not modelled 10.2 15
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
82c1senA_



not modelled 10.2 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-like protein p19;
PDBTitle: endoplasmic reticulum protein rp19 o95881
83c5ly0B_



not modelled 9.9 50
PDB header:transcription
Chain: B: PDB Molecule:lob family transfactor ramosa2.1;
PDBTitle: crystal structure of lob domain of ramosa2 from wheat
84c5fmga_



not modelled 9.9 11
PDB header:hydrolase
Chain: A: PDB Molecule:proteasome subunit alpha, putative;
PDBTitle: structure and function based design of plasmodium-selective proteasome2 inhibitors
85c1p4vA_



not modelled 9.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase
PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine
86c3hypB_



not modelled 9.6 36
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant
87c2vocA_



not modelled 9.6 18
PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: thioredoxin a active site mutants form mixed disulfide dimers that2 resemble enzyme-substrate reaction intermediate
88c2xb1A_



not modelled 9.5 56
PDB header:transcription
Chain: A: PDB Molecule:pygopus homolog 2, b-cell cll/lymphoma 9-like protein;
PDBTitle: crystal structure of the human pygo2 phd finger in complex with the2 b9l hd1 domain
89c3td7A_



not modelled 9.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-linked sulfhydryl oxidase r596;
PDBTitle: crysal structure of the mimivirus sulfhydryl oxidase r596
90d1ryp1_



not modelled 9.5 8
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
91d2hzba1



not modelled 9.5 30
Fold:CofD-like
Superfamily:CofD-like
Family:CofD-like
92d1j9ba_



not modelled 9.4 40
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ArsC-like
93d1t1ha_



not modelled 9.4 17
Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
94c6qm7V_



not modelled 9.1 22
PDB header:hydrolase
Chain: V: PDB Molecule:proteasome beta1 chain;
PDBTitle: leishmania tarentolae proteasome 20s subunit complexed with gsk3494245
95c1wkyA_



not modelled 9.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module
96d1qqra_



not modelled 9.0 11
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Staphylokinase/streptokinase
Family:Staphylokinase/streptokinase
97c4a0tB_



not modelled 9.0 35
PDB header:viral protein
Chain: B: PDB Molecule:tail fiber protein;
PDBTitle: structure of the carboxy-terminal domain of bacteriophage t7 fibre2 gp17 containing residues 371-553.
98c1jlzA_



not modelled 8.9 67
PDB header:toxin
Chain: A: PDB Molecule:tityustoxin alpha-ktx;
PDBTitle: solution structure of a k+-channel blocker from the2 scorpion toxin of tityus cambridgei
99d1jlza_



not modelled 8.9 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins

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