Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3321c_(-)_3708245_3708487
DateThu Aug 8 16:20:53 BST 2019
Unique Job ID74bba0970ed54d90
SequenceMRTTLSIDDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.503 Y:37.578 Z:32.370
Model (left) based on template c1q5vB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
Confidence and coverage
Confidence: 95.1% Coverage: 70%
56 residues ( 70% of your sequence) have been modelled with 95.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1q5vB_
95.1 27
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
2c5x3tA_
95.1 24
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
3c2bj3D_
94.9 14
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
4c2k5jB_
94.0 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
5d2bsqe1
93.7 17
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
6c3kk4B_
93.6 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
7c2h1oH_
93.3 17
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
8d2bj7a1
92.9 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9c2ca9B_
91.8 16
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
10d2hzaa1
90.1 30
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
11d2hzab1
87.7 30
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
12c6a7vU_
87.2 23
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
13c1xrxD_
73.2 29
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
14d1xrxa1
73.2 29
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
15c3h87D_
69.1 29
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
16c2k29A_
67.4 20
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
17c6g1nB_
53.3 26
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
18c2an7A_
47.9 21
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
19d1mnta_
43.0 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
20c3fmtF_
42.9 16
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
21d2cpga_
not modelled 40.2 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
22c1ea4K_
not modelled 40.2 23
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
23c1u9pA_
not modelled 24.9 15
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
24c4fxeB_
not modelled 24.8 20
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
25c4p7dA_
not modelled 23.4 21
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
26c2mdvB_
not modelled 21.9 25
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
27c1t01B_
not modelled 20.9 47
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:talin 1;
PDBTitle: vinculin complexed with the vbs1 helix from talin
28d1wuda1
not modelled 19.8 17
Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
29c6a6xC_
not modelled 19.0 26
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
30d1s4ka_
not modelled 19.0 22
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
31c1syqB_
not modelled 18.3 47
PDB header:cell adhesion
Chain: B: PDB Molecule:talin 1;
PDBTitle: human vinculin head domain vh1, residues 1-258, in complex with human2 talin's vinculin binding site 1, residues 607-636
32d1a2za_
not modelled 17.9 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
33c3qoqC_
not modelled 16.6 16
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
34c4q2uM_
not modelled 16.1 10
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
35d1iofa_
not modelled 13.9 19
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
36d1zq1c2
not modelled 13.5 21
Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
37d1iu8a_
not modelled 13.4 20
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
38c4a1qB_
not modelled 13.1 28
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: solution structure of e73 protein from sulfolobus spindle-2 shaped virus ragged hills, a hyperthermophilic3 crenarchaeal virus from yellowstone national park
39c4aaiB_
not modelled 13.1 28
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: thermostable protein from hyperthermophilic virus ssv-rh
40c3lacA_
not modelled 12.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: crystal structure of bacillus anthracis pyrrolidone-carboxylate2 peptidase, pcp
41c3giuA_
not modelled 12.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: 1.25 angstrom crystal structure of pyrrolidone-carboxylate peptidase2 (pcp) from staphylococcus aureus
42c2jr6A_
not modelled 11.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
43c5htlA_
not modelled 11.8 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:msha biogenesis protein mshe;
PDBTitle: structure of mshe with cdg
44c3t98C_
not modelled 11.5 24
PDB header:protein transport
Chain: C: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
45d1d8wa_
not modelled 11.4 24
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:L-rhamnose isomerase
46c4gxhC_
not modelled 10.4 23
PDB header:hydrolase
Chain: C: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: crystal structure of a pyrrolidone-carboxylate peptidase 1 (target id2 nysgrc-012831) from xenorhabdus bovienii ss-2004
47c6ejfQ_
not modelled 10.4 11
PDB header:motor protein
Chain: Q: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (apoprotein form)
48d1auga_
not modelled 9.8 27
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
49d2d6fc2
not modelled 9.6 23
Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
50d1xrsa_
not modelled 9.1 11
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:D-lysine 5,6-aminomutase alpha subunit, KamD
51c3t98A_
not modelled 9.1 24
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
52c6iyaD_
not modelled 8.8 19
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
53c1zw2B_
not modelled 8.4 33
PDB header:protein binding
Chain: B: PDB Molecule:talin;
PDBTitle: vinculin head (0-258) in complex with the talin rod2 residues 2345-2369
54c2gpyB_
not modelled 8.0 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of putative o-methyltransferase from bacillus2 halodurans
55c2ebjB_
not modelled 7.6 40
PDB header:hydrolase
Chain: B: PDB Molecule:pyrrolidone carboxyl peptidase;
PDBTitle: crystal structure of pyrrolidone carboxyl peptidase from thermus2 thermophilus
56d1ltqa1
not modelled 7.6 0
Fold:HAD-like
Superfamily:HAD-like
Family:phosphatase domain of polynucleotide kinase
57c4d8jD_
not modelled 7.5 21
PDB header:dna binding protein
Chain: D: PDB Molecule:macrodomain ter protein;
PDBTitle: structure of e. coli matp-mats complex
58c4hv0B_
not modelled 7.0 13
PDB header:transcription, viral protein
Chain: B: PDB Molecule:avtr;
PDBTitle: structure and function of avtr, a novel transcriptional regulator from2 a hyperthermophilic archaeal lipothrixvirus
59d1p94a_
not modelled 5.8 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
60d1a4ia2
not modelled 5.7 19
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Tetrahydrofolate dehydrogenase/cyclohydrolase
61c3kxeD_
not modelled 5.7 15
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
62c3abqA_
not modelled 5.6 19
PDB header:lyase
Chain: A: PDB Molecule:ethanolamine ammonia-lyase heavy chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and 2-amino-1-propanol
63c4xc8B_
not modelled 5.4 17
PDB header:isomerase
Chain: B: PDB Molecule:isobutyryl-coa mutase fused;
PDBTitle: isobutyryl-coa mutase fused with bound butyryl-coa, gdp, and mg and2 without cobalamin (apo-icmf/gdp)
64c6dy3G_
not modelled 5.4 20
PDB header:hydrolase
Chain: G: PDB Molecule:n-acylethanolamine-hydrolyzing acid amidase alpha-subunit;
PDBTitle: caenorhabditis elegans n-acylethanolamine-hydrolyzing acid amidase2 (naaa) ortholog
65c6dy1A_
not modelled 5.4 4
PDB header:hydrolase
Chain: A: PDB Molecule:n-acylethanolamine acid amidase alpha-subunit;
PDBTitle: rabbit n-acylethanolamine-hydrolyzing acid amidase (naaa) with fatty2 acid (myristate), in presence of triton x-100

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