Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3331_(sugI)_3717261_3718769
DateThu Aug 8 16:20:54 BST 2019
Unique Job ID36fa95c6ae37174e
SequenceVTTLWQPHRN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.942 Y:51.302 Z:72.863
Model (left) based on template c6h7dA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
Confidence and coverage
Confidence:100.0% Coverage: 90%
451 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6h7dA_
100.0 26
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
2c4ybqB_
100.0 25
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
3c5c65A_
100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
4c4gbzA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:d-xylose-proton symporter;
PDBTitle: the structure of the mfs (major facilitator superfamily) proton:xylose2 symporter xyle bound to d-glucose
5c4ldsB_
100.0 30
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
6c4pypA_
100.0 25
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
7c4j05A_
100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
8c6e9oA_
100.0 16
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
9d1pw4a_
100.0 15
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
10c4zp0A_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
11c6gs7A_
100.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:dipeptide and tripeptide permease a;
PDBTitle: crystal structure of peptide transporter dtpa-nanobody in glycine2 buffer
12c6exsA_
100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
13c4cl5B_
100.0 13
PDB header:transport protein
Chain: B: PDB Molecule:nitrate transporter 1.1;
PDBTitle: crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
14c4w6vA_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
15c4ikyA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
16c3wdoA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
17c4apsB_
100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
18c6g9xB_
100.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
19c3o7pA_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
20c4lepB_
100.0 13
PDB header:membrane protein, tranport protein
Chain: B: PDB Molecule:proton:oligopeptide symporter pot family;
PDBTitle: structural insights into substrate recognition in proton dependent2 oligopeptide transporters
21c6ei3A_
not modelled 100.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:proton-dependent oligopeptide transporter family protein;
PDBTitle: crystal structure of auto inhibited pot family peptide transporter
22c4iu8A_
not modelled 100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
23d1pv7a_
not modelled 100.0 12
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
24c1pv7B_
not modelled 100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
25c2xutC_
not modelled 100.0 14
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot) family2 transporter.
26c2gfpA_
not modelled 100.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
27c4q65A_
not modelled 100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:dipeptide permease d;
PDBTitle: structure of the e. coli peptide transporter ybgh
28c4iu9A_
not modelled 99.9 15
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
29c5aynA_
not modelled 99.9 14
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
30c5aymA_
not modelled 99.8 13
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
31c4m64D_
not modelled 99.7 12
PDB header:transport protein
Chain: D: PDB Molecule:melibiose carrier protein;
PDBTitle: 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
32c6ob7A_
not modelled 99.4 11
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
33c2b6pA_
not modelled 81.5 11
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
34c4djiA_
not modelled 77.3 11
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
35c5xjjA_
not modelled 38.0 11
PDB header:transport protein
Chain: A: PDB Molecule:multi drug efflux transporter;
PDBTitle: crystal structure of a mate family protein
36c3b9yA_
not modelled 37.7 10
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
37d2j85a1
not modelled 36.1 25
Fold:STIV B116-like
Superfamily:STIV B116-like
Family:STIV B116-like
38c3ff5B_
not modelled 36.0 31
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
39c5aonB_
not modelled 34.7 31
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
40c5l87A_
not modelled 32.5 31
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
41d1fs1b1
not modelled 27.8 46
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
42c2w85A_
not modelled 26.2 31
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
43c3c9pA_
not modelled 25.7 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sp1917;
PDBTitle: crystal structure of uncharacterized protein sp1917
44c5i6xA_
not modelled 22.0 10
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
45c4kppA_
not modelled 21.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
46c5aexJ_
not modelled 20.4 14
PDB header:membrane protein
Chain: J: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
47c6eu6A_
not modelled 20.2 13
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
48d1rhzb_
not modelled 18.6 30
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
49c3oc5A_
not modelled 18.1 23
PDB header:cell adhesion
Chain: A: PDB Molecule:toxin coregulated pilus biosynthesis protein f;
PDBTitle: crystal structure of the vibrio cholerae secreted colonization factor2 tcpf
50c3mkuB_
not modelled 17.3 10
PDB header:transport protein
Chain: B: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
51c2f9jP_
not modelled 15.0 28
PDB header:rna binding protein
Chain: P: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
52d1ov9a_
not modelled 14.6 13
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
53d1xjsa_
not modelled 14.5 7
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
54d1fs2b1
not modelled 14.2 50
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
55c2g9pA_
not modelled 13.8 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
56d1ni8a_
not modelled 13.8 22
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
57c2fhoA_
not modelled 13.0 29
PDB header:rna binding protein
Chain: A: PDB Molecule:spliceosomal protein sf3b155;
PDBTitle: nmr solution structure of the human spliceosomal protein2 complex p14-sf3b155
58d1ofcx1
not modelled 12.3 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
59c4k1cA_
not modelled 12.2 12
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
60c3hd6A_
not modelled 12.1 10
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
61d1nexa1
not modelled 11.6 46
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
62c3qnqD_
not modelled 11.1 15
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
63d2csba1
not modelled 10.8 46
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
64c5tgyA_
not modelled 10.4 35
PDB header:unknown function
Chain: A: PDB Molecule:ps1;
PDBTitle: nmr structure of holo-ps1
65c5uftA_
not modelled 10.2 18
PDB header:metal binding protein
Chain: A: PDB Molecule:nitrogen-fixing nifu-like, n-terminal;
PDBTitle: crystal structure of a nitrogen-fixing nifu-like protein (n-terminal)2 from brucella abortus
66c6adqP_
not modelled 9.8 10
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
67c2wwbB_
not modelled 9.4 17
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
68d1su0b_
not modelled 9.4 9
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
69c3h1cD_
not modelled 9.2 36
PDB header:transferase
Chain: D: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
70c3h1cS_
not modelled 9.2 36
PDB header:transferase
Chain: S: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
71c3h1cH_
not modelled 9.2 36
PDB header:transferase
Chain: H: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
72c3h1cU_
not modelled 9.2 36
PDB header:transferase
Chain: U: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
73c3h1cN_
not modelled 9.2 36
PDB header:transferase
Chain: N: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
74c3gcmF_
not modelled 9.2 36
PDB header:transferase / protein binding
Chain: F: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of e. coli polynucleotide phosphorylase2 bound to rna and rnase e
75c3gcmD_
not modelled 9.2 36
PDB header:transferase / protein binding
Chain: D: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of e. coli polynucleotide phosphorylase2 bound to rna and rnase e
76c3gmeD_
not modelled 9.2 36
PDB header:transferase / protein binding
Chain: D: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase in complex2 with rnase e and manganese
77c3h1cY_
not modelled 9.2 36
PDB header:transferase
Chain: Y: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
78c3h1cF_
not modelled 9.2 36
PDB header:transferase
Chain: F: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
79c3h1cP_
not modelled 9.2 36
PDB header:transferase
Chain: P: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
80c3h1cW_
not modelled 9.2 36
PDB header:transferase
Chain: W: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
81c3h1cL_
not modelled 9.2 36
PDB header:transferase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
82c3h1cE_
not modelled 9.2 36
PDB header:transferase
Chain: E: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
83c3h1cJ_
not modelled 9.2 36
PDB header:transferase
Chain: J: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
84c3gcmE_
not modelled 9.1 36
PDB header:transferase / protein binding
Chain: E: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of e. coli polynucleotide phosphorylase2 bound to rna and rnase e
85d2ovra1
not modelled 9.0 50
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
86d3proc1
not modelled 8.4 7
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
87c5vf3Z_
not modelled 8.4 33
PDB header:virus
Chain: Z: PDB Molecule:highly immunogenic outer capsid protein;
PDBTitle: bacteriophage t4 isometric capsid
88c2vpzG_
not modelled 8.3 23
PDB header:oxidoreductase
Chain: G: PDB Molecule:hypothetical membrane spanning protein;
PDBTitle: polysulfide reductase native structure
89c3mmyF_
not modelled 8.1 31
PDB header:nuclear protein
Chain: F: PDB Molecule:nuclear pore complex protein nup98;
PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1
90d1xtda2
not modelled 8.1 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
91c2mkvA_
not modelled 8.1 17
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
92c1y7oE_
not modelled 8.0 20
PDB header:hydrolase
Chain: E: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: the structure of streptococcus pneumoniae a153p clpp
93c3ervA_
not modelled 8.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative c39-like peptidase;
PDBTitle: crystal structure of an putative c39-like peptidase from bacillus2 anthracis
94c3t7vA_
not modelled 8.0 24
PDB header:transferase
Chain: A: PDB Molecule:methylornithine synthase pylb;
PDBTitle: crystal structure of methylornithine synthase (pylb)
95c2lr8A_
not modelled 7.8 0
PDB header:apoptosis
Chain: A: PDB Molecule:casp8-associated protein 2;
PDBTitle: solution nmr structure of casp8-associated protein 2 from homo2 sapiens, northeast structural genomics consortium (nesg) target3 hr8150a
96d1xeqa1
not modelled 7.7 27
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:N-terminal, RNA-binding domain of nonstructural protein NS1
97d1w7ca3
not modelled 7.6 8
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
98c4jjgB_
not modelled 7.6 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase;
PDBTitle: crystal structure of fe-hydrogenase from methanothermobacter2 marburgensis in complex with toluenesulfonylmethylisocyanide
99d1nh2d1
not modelled 7.6 19
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below