Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3333c_(-)_3720108_3720953
DateThu Aug 8 16:20:54 BST 2019
Unique Job IDfb5f4765300bb3a2
SequenceMFTGIASHAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.258 Y:29.695 Z:41.303
Model (left) based on template c2y69R_
Top template information
PDB header:electron transport
Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
Confidence and coverage
Confidence: 71.6% Coverage: 25%
71 residues ( 25% of your sequence) have been modelled with 71.6% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2y69R_
71.6 25
PDB header:electron transport
Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
2d1v54e_
70.9 25
Fold:alpha-alpha superhelix
Superfamily:Cytochrome c oxidase subunit E
Family:Cytochrome c oxidase subunit E
3c5yysC_
70.4 19
PDB header:transferase
Chain: C: PDB Molecule:l-fucokinase, l-fucose-1-p guanylyltransferase;
PDBTitle: cryo-em structure of l-fucokinase, gdp-fucose pyrophosphorylase (fkp)2 in bacteroides fragilis
4d1zsqa2
69.3 18
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Myotubularin-like phosphatases
5c4y7iB_
65.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:myotubularin-related protein 8;
PDBTitle: crystal structure of mtmr8
6c1lw3A_
58.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 2;
PDBTitle: crystal structure of myotubularin-related protein 22 complexed with phosphate
7c3g2bA_
55.4 24
PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
8d1ajsa_
52.9 21
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
9c6hu9r_
52.8 16
PDB header:oxidoreductase/electron transport
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit 7;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
10c1zsqA_
52.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 2;
PDBTitle: crystal structure of mtmr2 in complex with2 phosphatidylinositol 3-phosphate
11c2yf0A_
51.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 6;
PDBTitle: human myotubularin related protein 6 (mtmr6)
12c5u32A_
44.5 24
PDB header:transferase
Chain: A: PDB Molecule:trna ligase;
PDBTitle: crystal structure of fungal rna kinase
13c5sxyA_
43.8 31
PDB header:chaperone
Chain: A: PDB Molecule:bifunctional coenzyme pqq synthesis protein c/d;
PDBTitle: the solution nmr structure for the pqqd truncation of methylobacterium2 extorquens pqqcd representing a functional and stand-alone3 ribosomally synthesized and post-translational modified (ripp)4 recognition element (rre)
14c6jx3B_
43.5 23
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
15d1iqpa1
40.8 22
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
16c4rodA_
38.1 9
PDB header:transcription
Chain: A: PDB Molecule:transcription factor iiib 50 kda subunit;
PDBTitle: human tfiib-related factor 2 (brf2) and tbp bound to trnau1 promoter
17d1j6ua3
37.7 16
Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
18d1sxjd1
35.8 19
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
19c4f43A_
32.7 19
PDB header:recombination/dna
Chain: A: PDB Molecule:protelomerase;
PDBTitle: protelomerase tela mutant r255a complexed with caag hairpin dna
20c5vykC_
32.1 21
PDB header:signaling protein
Chain: C: PDB Molecule:chimera protein of brs domain of braf and cc-sam domain of
PDBTitle: crystal structure of the brs domain of braf in complex with the cc-sam2 domain of ksr1
21c2lnmA_
not modelled 31.7 30
PDB header:protein transport
Chain: A: PDB Molecule:protein tic 40, chloroplastic;
PDBTitle: solution structure of the c-terminal np-repeat domain of tic40, a co-2 chaperone during protein import into chloroplasts
22c4gduB_
not modelled 30.9 15
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of sulfate-bound human l-asparaginase protein
23c3t5qA_
not modelled 29.5 31
PDB header:viral protein/rna
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: 3a structure of lassa virus nucleoprotein in complex with ssrna
24d1sxjc1
not modelled 29.5 19
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
25c3qflA_
not modelled 28.5 17
PDB header:protein binding
Chain: A: PDB Molecule:mla10;
PDBTitle: coiled-coil domain-dependent homodimerization of intracellular mla2 immune receptors defines a minimal functional module for triggering3 cell death
26c5v1uB_
not modelled 28.3 19
PDB header:protein binding
Chain: B: PDB Molecule:tbib1;
PDBTitle: tbib1 in complex with the tbia(beta) leader peptide
27d1rp3a3
not modelled 27.3 19
Fold:Sigma2 domain of RNA polymerase sigma factors
Superfamily:Sigma2 domain of RNA polymerase sigma factors
Family:Sigma2 domain of RNA polymerase sigma factors
28c4cmrB_
not modelled 27.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase/deacetylase family protein;
PDBTitle: the crystal structure of novel exo-type maltose-forming2 amylase(py04_0872) from pyrococcus sp. st04
29c5fmmA_
not modelled 26.6 33
PDB header:viral protein
Chain: A: PDB Molecule:influenza a pb2 subunit;
PDBTitle: crystal structure of the mid, cap-binding, mid-link and 627 domains2 from avian influenza a virus polymerase pb2 subunit bound to m7gtp
30d1aoaa2
not modelled 26.2 25
Fold:CH domain-like
Superfamily:Calponin-homology domain, CH-domain
Family:Calponin-homology domain, CH-domain
31c5wl0A_
not modelled 24.9 33
PDB header:viral protein/inhibitor
Chain: A: PDB Molecule:polymerase basic protein 2;
PDBTitle: co-crystal structure of influenza a h3n2 pb2 (241-741) bound to vx-787
32c6cfzJ_
not modelled 24.1 12
PDB header:nuclear protein
Chain: J: PDB Molecule:spc34;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
33c3brtC_
not modelled 23.6 29
PDB header:transferase/transcription
Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase subunit beta,
PDBTitle: nemo/ikk association domain structure
34c4v1ah_
not modelled 22.8 17
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
35c6f7sB_
not modelled 22.3 20
PDB header:rna binding protein
Chain: B: PDB Molecule:serrate rna effector molecule homolog;
PDBTitle: crystal structure of human ars2 residues 147-270 + 408-763 with2 deletion of loop b
36d1l9la_
not modelled 22.0 19
Fold:Saposin-like
Superfamily:Saposin
Family:NKL-like
37c3okqA_
not modelled 21.8 21
PDB header:protein binding
Chain: A: PDB Molecule:bud site selection protein 6;
PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6
38c1vw45_
not modelled 21.2 19
PDB header:ribosome
Chain: 5: PDB Molecule:54s ribosomal protein l3, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
39c6hqaE_
not modelled 21.0 17
PDB header:transcription
Chain: E: PDB Molecule:subunit (60 kda) of tfiid and saga complexes;
PDBTitle: molecular structure of promoter-bound yeast tfiid
40c3mx2A_
not modelled 20.7 31
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: lassa fever virus nucleoprotein complexed with dttp
41c2o01D_
not modelled 20.6 35
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem i reaction center subunit ii, chloroplast;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
42c3o8jH_
not modelled 20.1 17
PDB header:transferase
Chain: H: PDB Molecule:2-methylcitrate synthase;
PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium
43c3fymA_
not modelled 20.0 14
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus
44c6fosD_
not modelled 19.7 27
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem i p700 chlorophyll a apoprotein a2;
PDBTitle: cyanidioschyzon merolae photosystem i
45d2ntka1
not modelled 18.9 25
Fold:Ntn hydrolase-like
Superfamily:Archaeal IMP cyclohydrolase PurO
Family:Archaeal IMP cyclohydrolase PurO
46d1sxjb1
not modelled 18.8 19
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
47c1vgmB_
not modelled 18.6 29
PDB header:transferase
Chain: B: PDB Molecule:378aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
48c4h63H_
not modelled 18.3 10
PDB header:transcription
Chain: H: PDB Molecule:mediator of rna polymerase ii transcription subunit 8;
PDBTitle: structure of the schizosaccharomyces pombe mediator head module
49c3e1yD_
not modelled 18.2 12
PDB header:translation
Chain: D: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of human erf1/erf3 complex
50c6f42V_
not modelled 17.9 12
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
51c4qicB_
not modelled 17.8 56
PDB header:signaling protein/dna binding protein
Chain: B: PDB Molecule:anti-sigma factor nepr;
PDBTitle: co-crystal structure of anti-anti-sigma factor phyr complexed with2 anti-sigma factor nepr from bartonella quintana
52c2ptwA_
not modelled 17.7 17
PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of the t. brucei enolase complexed with2 sulphate, identification of a metal binding site iv
53c5ed7A_
not modelled 17.5 21
PDB header:viral protein
Chain: A: PDB Molecule:tegument protein ul21;
PDBTitle: crystal structure of hsv-1 ul21 c-terminal domain
54c2w61A_
not modelled 17.2 16
PDB header:glycoprotein
Chain: A: PDB Molecule:glycolipid-anchored surface protein 2;
PDBTitle: saccharomyces cerevisiae gas2p apostructure (e176q mutant)
55d1euca2
not modelled 17.1 9
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
56c6f1yf_
not modelled 16.5 20
PDB header:motor protein
Chain: F: PDB Molecule:
PDBTitle: dynein light intermediate chain region of the dynein2 tail/dynactin/bicdr1 complex
57d2csua3
not modelled 16.5 27
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
58c6egkB_
not modelled 16.4 14
PDB header:lyase
Chain: B: PDB Molecule:cucumene synthase;
PDBTitle: t181n cucumene synthase
59d1llib_
not modelled 16.1 12
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
60d1jb0d_
not modelled 15.9 27
Fold:Photosystem I subunit PsaD
Superfamily:Photosystem I subunit PsaD
Family:Photosystem I subunit PsaD
61c5d3aA_
not modelled 15.9 19
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein kif21a;
PDBTitle: kif21a regulatory coiled coil
62c6igmH_
not modelled 15.6 18
PDB header:transcription
Chain: H: PDB Molecule:helicase srcap;
PDBTitle: cryo-em structure of human srcap complex
63d1vp8a_
not modelled 15.5 21
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:MTH1675-like
64c3rfiA_
not modelled 15.4 10
PDB header:hydrolase
Chain: A: PDB Molecule:asp;
PDBTitle: crystal structure of the saposin-like domain of plant aspartic2 protease from solanum tuberosum
65d2nu7a2
not modelled 15.3 20
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
66c2wseD_
not modelled 15.1 35
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem i reaction center subunit ii, chloroplastic;
PDBTitle: improved model of plant photosystem i
67d1k47a2
not modelled 14.8 13
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Phosphomevalonate kinase (PMK)
68c3tb4A_
not modelled 14.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:vibriobactin-specific isochorismatase;
PDBTitle: crystal structure of the isc domain of vibb
69c2h5xA_
not modelled 14.5 16
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva;
PDBTitle: ruva from mycobacterium tuberculosis
70d2dula1
not modelled 14.4 30
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TRM1-like
71d2jfga3
not modelled 14.4 20
Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
72d2p10a1
not modelled 14.3 32
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Mll9387-like
73c6cauA_
not modelled 14.3 24
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii2 ab5075-uw with amppnp
74c2wusR_
not modelled 14.3 7
PDB header:structural protein
Chain: R: PDB Molecule:putative uncharacterized protein;
PDBTitle: bacterial actin mreb assembles in complex with cell shape protein rodz
75c5f4tA_
not modelled 14.2 30
PDB header:cell adhesion
Chain: A: PDB Molecule:izumo sperm-egg fusion protein 1;
PDBTitle: crystal structure of the human sperm izumo1 residues 22-254
76d1ngra_
not modelled 14.2 30
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
77c5b5yA_
not modelled 14.1 32
PDB header:metal binding protein
Chain: A: PDB Molecule:ptlcib4;
PDBTitle: crystal structure of ptlcib4, a homolog of the limiting co2-inducible2 protein lcib
78c2zakB_
not modelled 14.1 22
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase precursor;
PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation
79d1dpua_
not modelled 14.1 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal domain of RPA32
80c1dpuA_
not modelled 14.1 20
PDB header:dna binding protein
Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain;
PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88)
81c6cngA_
not modelled 14.1 14
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b3 protein;
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b3 protein loaded with linoleic acid to 1.47 angstrom3 resolution
82c3j7yf_
not modelled 13.2 38
PDB header:ribosome
Chain: F: PDB Molecule:ul4;
PDBTitle: structure of the large ribosomal subunit from human mitochondria
83c4pu6A_
not modelled 13.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with k+ cations
84d1p3da3
not modelled 13.1 24
Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
85c1mgpA_
not modelled 13.1 21
PDB header:lipid binding protein
Chain: A: PDB Molecule:hypothetical protein tm841;
PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function
86d1mgpa_
not modelled 13.1 21
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
87d1kwma2
not modelled 13.1 18
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
88d1h8ua_
not modelled 12.9 17
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
89d1gg4a4
not modelled 12.7 28
Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
90c4lwsB_
not modelled 12.6 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
91c2p10D_
not modelled 12.2 32
PDB header:hydrolase
Chain: D: PDB Molecule:mll9387 protein;
PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution
92c1u0iA_
not modelled 12.1 44
PDB header:de novo protein
Chain: A: PDB Molecule:iaal-e3;
PDBTitle: iaal-e3/k3 heterodimer
93c3t76A_
not modelled 12.0 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
94c2hl7A_
not modelled 11.9 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
95d1dlwa_
not modelled 11.7 15
Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
96c4gwpC_
not modelled 11.7 7
PDB header:transcription
Chain: C: PDB Molecule:mediator of rna polymerase ii transcription subunit 8;
PDBTitle: structure of the mediator head module from s. cerevisiae
97d1a6db2
not modelled 11.4 31
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
98d1up8a_
not modelled 11.3 28
Fold:Acid phosphatase/Vanadium-dependent haloperoxidase
Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase
Family:Haloperoxidase (bromoperoxidase)
99c3ke2A_
not modelled 11.2 23
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_928783.1;
PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution

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