Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3343c_(PPE54)_3729535_3737106
DateThu Aug 8 16:20:55 BST 2019
Unique Job ID20d8ff8b5133f869
SequenceMSFVVMPPEI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.669 Y:72.050 Z:69.688
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 7%
173 residues ( 7% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
399 residues ( 16%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 82% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 51
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2d2g38b1
100.0 32
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
3c2g38B_
100.0 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
4c4xy3A_
100.0 22
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
97.1 15
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
96.6 9
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c4iogD_
96.4 16
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
8c3gvmA_
96.0 14
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
9c3zbhC_
95.8 19
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
94.6 16
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c5nxhB_
90.8 12
PDB header:viral protein
Chain: B: PDB Molecule:long-tail fiber proximal subunit;
PDBTitle: crystal structure of the carboxy-terminal region of the bacteriophage2 t4 proximal long tail fibre protein gp34, residues 744-1289 at 2.93 angstrom resolution
12c3jywF_
76.7 43
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
13c4i0xA_
76.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
14d1xkna_
68.8 14
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
15d1wa8b1
67.9 14
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
16c4lwsA_
67.9 21
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
17d1ui5a2
67.6 18
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
18c2vsnB_
64.8 14
PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
19d1oy0a_
61.4 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
20c3pe3D_
59.4 16
PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
21c3ahrA_
not modelled 57.6 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:ero1-like protein alpha;
PDBTitle: inactive human ero1
22d2fr1a1
not modelled 57.0 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
23d3cx5d1
not modelled 54.3 28
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
24d1ppjd1
not modelled 52.6 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
25d1vkpa_
not modelled 51.8 24
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
26d2ewoa1
not modelled 51.0 24
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
27c3ed6B_
not modelled 48.4 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus
28c1qcrD_
not modelled 47.0 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:ubiquinol cytochrome c oxidoreductase;
PDBTitle: crystal structure of bovine mitochondrial cytochrome bc12 complex, alpha carbon atoms only
29c2v7iA_
not modelled 46.9 25
PDB header:biosynthetic protein
Chain: A: PDB Molecule:prnb;
PDBTitle: prnb native
30c1zrtD_
not modelled 46.7 41
PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
31c4fm9A_
not modelled 45.9 24
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 2-alpha;
PDBTitle: human topoisomerase ii alpha bound to dna
32c3qx3B_
not modelled 43.6 31
PDB header:isomerase/dna/isomerase inhibitor
Chain: B: PDB Molecule:dna topoisomerase 2-beta;
PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
33c4rqoB_
not modelled 43.2 29
PDB header:lyase
Chain: B: PDB Molecule:l-serine dehydratase;
PDBTitle: crystal structure of l-serine dehydratase from legionella pneumophila
34c3cwbQ_
not modelled 42.3 25
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
35c3fpjA_
not modelled 41.0 17
PDB header:biosynthetic protein, transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of e81q mutant of mtnas in complex with s-2 adenosylmethionine
36c4lwsB_
not modelled 40.8 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
37c5kf6B_
not modelled 39.8 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of proline utilization a from sinorhizobium meliloti2 complexed with l-tetrahydrofuroic acid and nad+ in space group p21
38c4lrvL_
not modelled 39.6 30
PDB header:dna binding protein
Chain: L: PDB Molecule:dna sulfur modification protein dnde;
PDBTitle: crystal structure of dnde from escherichia coli b7a involved in dna2 phosphorothioation modification
39c5evyX_
not modelled 39.3 11
PDB header:oxidoreductase
Chain: X: PDB Molecule:salicylate hydroxylase;
PDBTitle: salicylate hydroxylase substrate complex
40d2jera1
not modelled 39.1 22
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
41c2yiuE_
not modelled 38.9 41
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
42d2cmua1
not modelled 38.8 18
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
43c3u4jB_
not modelled 38.4 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad-dependent aldehyde dehydrogenase;
PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 sinorhizobium meliloti
44c3lhoA_
not modelled 37.5 42
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of putative hydrolase (yp_751971.1) from shewanella2 frigidimarina ncimb 400 at 1.80 a resolution
45c1p84D_
not modelled 37.4 28
PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
46c5lzkB_
not modelled 37.1 4
PDB header:structural genomics
Chain: B: PDB Molecule:protein fam83b;
PDBTitle: structure of the domain of unknown function duf1669 from human fam83b
47c2fynH_
not modelled 36.9 35
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c1;
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
48d1bjta_
not modelled 35.6 22
Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
49c1bjtA_
not modelled 35.6 22
PDB header:topoisomerase
Chain: A: PDB Molecule:topoisomerase ii;
PDBTitle: topoisomerase ii residues 409-1201
50d2f7fa1
not modelled 35.5 17
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
51c4evxA_
not modelled 34.3 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative phage endolysin;
PDBTitle: crystal structure of putative phage endolysin from s. enterica
52c2kg7B_
not modelled 33.9 18
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
53c2ve5H_
not modelled 33.4 18
PDB header:oxidoreductase
Chain: H: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa
54c5djsA_
not modelled 32.9 19
PDB header:transferase
Chain: A: PDB Molecule:tetratricopeptide tpr_2 repeat protein;
PDBTitle: thermobaculum terrenum o-glcnac transferase mutant - k341m
55c6b2wB_
not modelled 32.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:putative peptidyl-arginine deiminase family protein;
PDBTitle: c. jejuni c315s agmatine deiminase with substrate bound
56d1byra_
not modelled 32.2 28
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Nuclease
57c5tjrE_
not modelled 32.1 20
PDB header:oxidoreductase
Chain: E: PDB Molecule:methylmalonate-semialdehyde dehydrogenase;
PDBTitle: x-ray crystal structure of a methylmalonate semialdehyde dehydrogenase2 from pseudomonas sp. aac
58c3r8rJ_
not modelled 31.9 13
PDB header:transferase
Chain: J: PDB Molecule:transaldolase;
PDBTitle: transaldolase from bacillus subtilis
59d2a15a1
not modelled 31.3 22
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ketosteroid isomerase-like
60c2jerG_
not modelled 30.8 22
PDB header:hydrolase
Chain: G: PDB Molecule:agmatine deiminase;
PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction.
61c4jzaB_
not modelled 30.2 35
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a legionella phosphoinositide phosphatase:2 insights into lipid metabolism in pathogen host interaction
62c2vakF_
not modelled 29.7 25
PDB header:viral protein
Chain: F: PDB Molecule:sigma a;
PDBTitle: crystal structure of the avian reovirus inner capsid protein sigmaa
63d2gxfa1
not modelled 29.6 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
64d1zbra1
not modelled 28.5 16
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
65d1vpxa_
not modelled 28.3 13
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
66d1wx0a1
not modelled 27.9 13
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
67d1c9ka_
not modelled 27.8 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
68c6ca8A_
not modelled 27.7 19
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 2;
PDBTitle: crystal structure of plasmodium falciparum topoisomerase ii dna-2 binding, cleavage and re-ligation domain
69c1ga2A_
not modelled 27.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase 9g;
PDBTitle: the crystal structure of endoglucanase 9g from clostridium2 cellulolyticum complexed with cellobiose
70c4gfhA_
not modelled 27.1 22
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 2;
PDBTitle: topoisomerase ii-dna-amppnp complex
71d1o66a_
not modelled 27.1 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
72c4nl6C_
not modelled 26.2 86
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
73c4urjA_
not modelled 25.9 13
PDB header:unknown function
Chain: A: PDB Molecule:protein fam83a;
PDBTitle: crystal structure of human bj-tsa-9
74c3q3hA_
not modelled 25.4 15
PDB header:transferase
Chain: A: PDB Molecule:hmw1c-like glycosyltransferase;
PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
75c1ybeA_
not modelled 25.3 17
PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase
76c5zdhD_
not modelled 25.2 13
PDB header:protein transport
Chain: D: PDB Molecule:type ii secretion system protein d;
PDBTitle: cryoem structure of etec pilotin-secretin asps-gspd complex
77c2pheC_
not modelled 24.9 38
PDB header:transcription
Chain: C: PDB Molecule:alpha trans-inducing protein;
PDBTitle: model for vp16 binding to pc4
78c4aoaA_
not modelled 24.7 20
PDB header:transferase
Chain: A: PDB Molecule:beta-phenylalanine aminotransferase;
PDBTitle: biochemical properties and crystal structure of a novel2 beta-phenylalanine aminotransferase from variovorax3 paradoxus
79d1rp4a_
not modelled 24.5 25
Fold:ERO1-like
Superfamily:ERO1-like
Family:ERO1-like
80c5fhzF_
not modelled 24.2 16
PDB header:oxidoreductase
Chain: F: PDB Molecule:aldehyde dehydrogenase family 1 member a3;
PDBTitle: human aldehyde dehydrogenase 1a3 complexed with nad(+) and retinoic2 acid
81d1luaa2
not modelled 24.0 32
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Methylene-tetrahydromethanopterin dehydrogenase
82d1ohwa_
not modelled 23.8 7
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
83d1tpla_
not modelled 23.2 12
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
84c2k2uB_
not modelled 23.2 38
PDB header:transcription
Chain: B: PDB Molecule:alpha trans-inducing protein;
PDBTitle: nmr structure of the complex between tfb1 subunit of tfiih2 and the activation domain of vp16
85c6ghrF_
not modelled 23.1 65
PDB header:photosynthesis
Chain: F: PDB Molecule:cp12 polypeptide;
PDBTitle: cyanobacterial gapdh with full-length cp12
86c3vohA_
not modelled 22.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:cellobiohydrolase;
PDBTitle: cccel6a catalytic domain complexed with cellobiose
87c3hx8A_
not modelled 21.8 27
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
88d3cu3a1
not modelled 21.5 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
89d1yymg1
not modelled 20.8 23
Fold:gp120 core
Superfamily:gp120 core
Family:gp120 core
90c4o5hD_
not modelled 20.7 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:phenylacetaldehyde dehydrogenase;
PDBTitle: x-ray crystal structure of a putative phenylacetaldehyde dehydrogenase2 from burkholderia cenocepacia
91c5x5uB_
not modelled 20.4 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:alpha-ketoglutaric semialdehyde dehydrogenase;
PDBTitle: crystal strcuture of alpha-ketoglutarate-semialdehyde dehydrogenase2 (kgsadh) complexed with nad
92c6cboB_
not modelled 20.2 15
PDB header:transferase
Chain: B: PDB Molecule:c-6' aminotransferase;
PDBTitle: x-ray structure of genb1 from micromonospora echinospora in complex2 with neamine and plp (as the external aldimine)
93c2zcaB_
not modelled 20.1 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein tthb189;
PDBTitle: crystal structure of tthb189, a crispr-associated protein,2 cse2 family from thermus thermophilus hb8
94c3rf7A_
not modelled 19.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution
95d2nxya1
not modelled 19.6 23
Fold:gp120 core
Superfamily:gp120 core
Family:gp120 core
96c2phgB_
not modelled 19.6 38
PDB header:transcription
Chain: B: PDB Molecule:alpha trans-inducing protein;
PDBTitle: model for vp16 binding to tfiib
97c4aw7A_
not modelled 19.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:gh86a beta-porphyranase;
PDBTitle: bpgh86a: a beta-porphyranase of glycoside hydrolase family 86 from the2 human gut bacterium bacteroides plebeius
98c6fhjA_
not modelled 19.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:protein,protein;
PDBTitle: structural dynamics and catalytic properties of a multi-modular2 xanthanase, native.
99d1bvsa1
not modelled 18.6 29
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below