Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3349c_(-)_3754464_3755204
DateThu Aug 8 16:20:56 BST 2019
Unique Job IDc8ce6958f02edec8
SequenceVAIDPAAAYA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.106 Y:45.108 Z:52.123
Model (left) based on template c4r4zD_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:pngf-ii;
PDBTitle: structure of pngf-ii in p21 space group
Confidence and coverage
Confidence: 28.9% Coverage: 25%
62 residues ( 25% of your sequence) have been modelled with 28.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4r4zD_
28.9 24
PDB header:hydrolase
Chain: D: PDB Molecule:pngf-ii;
PDBTitle: structure of pngf-ii in p21 space group
2c1yt3A_
25.9 18
PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
3d1yt3a1
23.3 18
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
4c3u0kA_
22.9 14
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
5d3deoa1
21.6 53
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
6c3sztB_
19.8 6
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
7c5twaD_
19.4 48
PDB header:apoptosis
Chain: D: PDB Molecule:bak-2 protein;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
8d1f54a_
19.2 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
9c5twaC_
18.4 48
PDB header:apoptosis
Chain: C: PDB Molecule:bak-2 protein;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
10c5jffD_
18.4 21
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict mutant g55r in complex with ecfica
11c4wwaB_
16.2 17
PDB header:transferase
Chain: B: PDB Molecule:ekc/keops complex subunit cgi121;
PDBTitle: crystal structure of binary complex bud32-cgi121
12c5jw9A_
14.8 53
PDB header:protein binding
Chain: A: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the crystal structure of ell2 oclludin domain and aff4 peptide
13c3cymA_
13.0 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
14d1yioa1
12.6 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
15c2kukA_
12.5 80
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
16c5ly5A_
12.1 60
PDB header:unknown function
Chain: A: PDB Molecule:arcadin-1;
PDBTitle: arcadin-1 from pyrobaculum calidifontis
17c6irtA_
12.0 33
PDB header:membrane protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: human lat1-4f2hc complex bound with bch
18c4ct0B_
11.9 40
PDB header:circadian clock protein
Chain: B: PDB Molecule:period circadian protein homolog 2;
PDBTitle: crystal structure of mouse cryptochrome1 in complex with period2
19c2amiA_
11.6 13
PDB header:cell cycle
Chain: A: PDB Molecule:caltractin;
PDBTitle: solution structure of the calcium-loaded n-terminal sensor domain of2 centrin
20c3enpA_
11.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:tp53rk-binding protein;
PDBTitle: crystal structure of human cgi121
21c2zpnB_
not modelled 11.1 26
PDB header:protein transport
Chain: B: PDB Molecule:autophagy-related protein 8;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg8-2 atg19(412-415) complex
22c3k1qE_
not modelled 11.1 35
PDB header:
PDB COMPND:
23c6cfwK_
not modelled 11.0 32
PDB header:membrane protein
Chain: K: PDB Molecule:membrane-bound hydrogenase subunit beta;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
24c4i2yB_
not modelled 10.7 14
PDB header:fluorescent protein
Chain: B: PDB Molecule:rgeco1;
PDBTitle: crystal structure of the genetically encoded calcium indicator rgeco1
25c2ipcB_
not modelled 10.7 41
PDB header:transport protein
Chain: B: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer
26c3w1yA_
not modelled 10.4 26
PDB header:transport protein/ribosomal protein
Chain: A: PDB Molecule:microtubule-associated protein 1a/1b, light chain 3;
PDBTitle: crystal structure of t brucei atg8.2 in complex with e coli s10
27c1nl3B_
not modelled 10.4 41
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase seca 1 subunit;
PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form
28c1zljE_
not modelled 10.1 16
PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
29c5f5tD_
not modelled 10.1 42
PDB header:splicing
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the prp38-mfap1 complex of chaetomium2 thermophilum
30c2yskA_
not modelled 10.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1432;
PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus
31c2w6bA_
not modelled 9.8 25
PDB header:signaling protein
Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 7;
PDBTitle: crystal structure of the trimeric beta-pix coiled-coil2 domain
32c2krfB_
not modelled 9.8 9
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
33c5camC_
not modelled 9.7 18
PDB header:transcription
Chain: C: PDB Molecule:pupr protein;
PDBTitle: crystal structure of the cytoplasmic domain of the pseudomonas putida2 anti-sigma factor pupr (semet)
34d1dvja_
not modelled 9.7 24
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
35d1nwwa_
not modelled 9.5 25
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Limonene-1,2-epoxide hydrolase-like
36c6humJ_
not modelled 9.3 27
PDB header:proton transport
Chain: J: PDB Molecule:nad(p)h-quinone oxidoreductase subunit j;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
37c5jxdA_
not modelled 9.3 14
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor alpha-induced protein 8;
PDBTitle: crystal structure of murine tnfaip8 c165s mutant
38c3me5A_
not modelled 9.3 46
PDB header:transferase
Chain: A: PDB Molecule:cytosine-specific methyltransferase;
PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 2457t
39c4uz0B_
not modelled 8.8 42
PDB header:apoptosis
Chain: B: PDB Molecule:nucleolar protein 3;
PDBTitle: crystal structure of apoptosis repressor with card (arc)
40c5tz0B_
not modelled 8.8 40
PDB header:protein binding
Chain: B: PDB Molecule:fluorescence recovery protein;
PDBTitle: structure of the fremyella diplosiphon fluorescence recovery protein
41d1sw8a_
not modelled 8.8 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
42c2vdaA_
not modelled 8.7 35
PDB header:protein transport
Chain: A: PDB Molecule:translocase subunit seca;
PDBTitle: solution structure of the seca-signal peptide complex
43c3pt9A_
not modelled 8.6 57
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of mouse dnmt1(731-1602) in the free state
44c3r9jD_
not modelled 8.6 26
PDB header:cell cycle,hydrolase/cell cycle
Chain: D: PDB Molecule:cell division topological specificity factor;
PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex
45c2ynqD_
not modelled 8.4 19
PDB header:membrane protein
Chain: D: PDB Molecule:essb;
PDBTitle: crystal structure of geobacillus thermodenitrificans essb2 extracellular fragment
46d2fug51
not modelled 8.3 23
Fold:Nqo5-like
Superfamily:Nqo5-like
Family:Nqo5-like
47c3evrA_
not modelled 8.3 14
PDB header:signaling protein
Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent protein,
PDBTitle: crystal structure of calcium bound monomeric gcamp2
48c6honB_
not modelled 8.2 25
PDB header:gene regulation
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
49c6homB_
not modelled 8.2 25
PDB header:gene regulation
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
50c6honD_
not modelled 8.2 25
PDB header:gene regulation
Chain: D: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
51c2qrvA_
not modelled 8.2 20
PDB header:transferase/transferase regulator
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex
52c5f5uB_
not modelled 8.1 42
PDB header:splicing
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the snu23-prp38-mfap1(217-258) complex of2 chaetomium thermophilum
53c5f5uH_
not modelled 8.1 42
PDB header:splicing
Chain: H: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the snu23-prp38-mfap1(217-258) complex of2 chaetomium thermophilum
54c3mcrA_
not modelled 8.1 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh dehydrogenase, subunit c;
PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution
55c6aagF_
not modelled 8.1 26
PDB header:membrane protein
Chain: F: PDB Molecule:transmembrane protein 184 homolog ykr051w,autophagy-related
PDBTitle: crystal structure of budding yeast atg8 complexed with the helical aim2 of hfl1.
56c6homD_
not modelled 8.0 25
PDB header:gene regulation
Chain: D: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
57d3d32a1
not modelled 7.9 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:GABARAP-like
58d1n0ya_
not modelled 7.9 15
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
59c3n70F_
not modelled 7.8 12
PDB header:transport protein
Chain: F: PDB Molecule:transport activator;
PDBTitle: the crystal structure of the p-loop ntpase domain of the sigma-542 transport activator from e. coli to 2.8a
60c3f09B_
not modelled 7.7 14
PDB header:transferase
Chain: B: PDB Molecule:holo-[acyl-carrier-protein] synthase;
PDBTitle: 1.82 angstrom resolution crystal structure of holo-(acyl-carrier-2 protein) synthase (acps) from staphylococcus aureus
61d1klva_
not modelled 7.7 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:GABARAP-like
62c2mn1A_
not modelled 7.6 80
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
63c1h0mD_
not modelled 7.5 16
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein trar bound2 to its autoinducer and to its target dna
64c6gnxB_
not modelled 7.5 55
PDB header:structural protein
Chain: B: PDB Molecule:telomere repeats-binding bouquet formation protein 2;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex -2 selenomethionine derivative
65c6gnyD_
not modelled 7.4 55
PDB header:structural protein
Chain: D: PDB Molecule:telomere repeats-binding bouquet formation protein 2;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex
66c2kt5B_
not modelled 7.1 71
PDB header:rna binding protein / viral protein
Chain: B: PDB Molecule:icp27;
PDBTitle: rrm domain of mrna export adaptor ref2-i bound to hsv-1 icp27 peptide
67c1yybA_
not modelled 7.1 28
PDB header:apoptosis
Chain: A: PDB Molecule:programmed cell death protein 5;
PDBTitle: solution structure of 1-26 fragment of human programmed2 cell death 5 protein
68d1ykha1
not modelled 7.0 47
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:MED7 hinge region
69c6gboG_
not modelled 7.0 54
PDB header:viral protein
Chain: G: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the oligomerization domain of vp35 from ebola2 virus
70c3vvwB_
not modelled 7.0 21
PDB header:protein transport
Chain: B: PDB Molecule:microtubule-associated proteins 1a/1b light chain 3c;
PDBTitle: ndp52 in complex with lc3c
71c4uecB_
not modelled 6.9 57
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 4g, isoform a;
PDBTitle: complex of d. melanogaster eif4e with eif4g and cap analog
72c4fsxB_
not modelled 6.8 46
PDB header:transferase
Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of se-substituted zea mays zmet2 in complex with sah
73c1jhnA_
not modelled 6.8 32
PDB header:chaperone
Chain: A: PDB Molecule:calnexin;
PDBTitle: crystal structure of the lumenal domain of calnexin
74c3dinB_
not modelled 6.5 41
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:protein translocase subunit seca;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
75d2fd6u3
not modelled 6.5 41
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
76c4jdxB_
not modelled 6.5 40
PDB header:protein binding
Chain: B: PDB Molecule:slr1964 protein;
PDBTitle: structure of the fluorescence recovery protein from synechocystis sp2 pcc 6803
77c2gj0A_
not modelled 6.5 60
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
78c1vw4c_
not modelled 6.5 20
PDB header:ribosome
Chain: C: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
79d2zjda1
not modelled 6.5 32
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:GABARAP-like
80c2rnjA_
not modelled 6.5 17
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
81c2k7bA_
not modelled 6.4 12
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
82d1lyva_
not modelled 6.4 18
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Higher-molecular-weight phosphotyrosine protein phosphatases
83c2xv9A_
not modelled 6.3 8
PDB header:lipid binding protein
Chain: A: PDB Molecule:aba-1a1 repeat unit;
PDBTitle: the solution structure of aba-1a saturated with oleic acid
84c6a0cB_
not modelled 6.3 62
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
85d1a04a1
not modelled 6.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
86c3juxA_
not modelled 6.2 41
PDB header:protein transport
Chain: A: PDB Molecule:protein translocase subunit seca;
PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima
87d1ftha_
not modelled 6.1 13
Fold:4'-phosphopantetheinyl transferase
Superfamily:4'-phosphopantetheinyl transferase
Family:Holo-(acyl carrier protein) synthase ACPS
88c5u0pG_
not modelled 6.1 41
PDB header:transcription
Chain: G: PDB Molecule:mediator complex subunit 7;
PDBTitle: cryo-em structure of the transcriptional mediator
89c4z9vG_
not modelled 6.1 77
PDB header:apoptosis
Chain: G: PDB Molecule:translationally-controlled tumor protein;
PDBTitle: tctp contains a bh3-like domain, which instead of inhibiting,2 activates bcl-xl
90d1l3la1
not modelled 6.0 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
91c1x3uA_
not modelled 6.0 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
92c4lfuA_
not modelled 6.0 12
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
93c3lx6B_
not modelled 5.9 43
PDB header:transferase
Chain: B: PDB Molecule:cytosine-specific methyltransferase;
PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 2457t
94c5xxuY_
not modelled 5.9 23
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein es24;
PDBTitle: small subunit of toxoplasma gondii ribosome
95c1ej6D_
not modelled 5.9 22
PDB header:virus
Chain: D: PDB Molecule:sigma2;
PDBTitle: reovirus core
96c6gbrA_
not modelled 5.7 46
PDB header:viral protein
Chain: A: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the oligomerization domain of vp35 from reston2 virus, mercury derivative
97c5aj3k_
not modelled 5.7 50
PDB header:ribosome
Chain: K: PDB Molecule:mitoribosomal protein us11m, mrps11;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
98c2kgrA_
not modelled 5.7 20
PDB header:protein binding
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a
99c6a0cA_
not modelled 5.7 62
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii

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