Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3353c_(-)_3768907_3769167
DateThu Aug 8 16:20:56 BST 2019
Unique Job IDca119aae5967f88a
SequenceMSRQTFLRGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.591 Y:35.447 Z:27.338
Model (left) based on template c3w8wA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative fad-dependent oxygenase encm;
PDBTitle: the crystal structure of encm
Confidence and coverage
Confidence: 98.7% Coverage: 59%
51 residues ( 59% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
69 residues ( 80%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3w8wA_
98.7 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative fad-dependent oxygenase encm;
PDBTitle: the crystal structure of encm
2c2y3rC_
98.6 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:taml;
PDBTitle: structure of the tirandamycin-bound fad-dependent tirandamycin oxidase2 taml in p21 space group
3c2bvfA_
98.6 29
PDB header:oxidase
Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase;
PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1)
4c5i1wD_
98.5 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:crmk;
PDBTitle: crystal structure of crmk, a flavoenzyme involved in the shunt product2 recycling mechanism in caerulomycin biosynthesis
5c6eo5A_
98.3 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:ppbbe-like 1 d396n;
PDBTitle: physcomitrella patens bbe-like 1 variant d396n
6c1zr6A_
98.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucooligosaccharide oxidase;
PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation
7c2wdwB_
98.2 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative hexose oxidase;
PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis
8c3popD_
98.1 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:gilr oxidase;
PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis
9c2ipiD_
98.0 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox);
PDBTitle: crystal structure of aclacinomycin oxidoreductase
10c3rjaA_
98.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:carbohydrate oxidase;
PDBTitle: crystal structure of carbohydrate oxidase from microdochium nivale in2 complex with substrate analogue
11c3tsjA_
97.9 20
PDB header:allergen, oxidoreductase
Chain: A: PDB Molecule:pollen allergen phl p 4;
PDBTitle: crystal structure of phl p 4, a grass pollen allergen with glucose2 dehydrogenase activity
12c3vteA_
97.5 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:tetrahydrocannabinolic acid synthase;
PDBTitle: crystal structure of tetrahydrocannabinolic acid synthase from2 cannabis sativa
13c3fwaA_
97.4 13
PDB header:flavoprotein
Chain: A: PDB Molecule:reticuline oxidase;
PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline
14c3d2hA_
97.3 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:berberine bridge-forming enzyme;
PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form
15c5l6fA_
97.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad linked oxidase-like protein;
PDBTitle: xylooligosaccharide oxidase from myceliophthora thermophila c1 in2 complex with xylobiose
16c6f74B_
97.1 20
PDB header:flavoprotein
Chain: B: PDB Molecule:alcohol oxidase;
PDBTitle: crystal structure of vao-type flavoprotein mtvao713 from2 myceliophthora thermophila c1
17c5d79B_
97.1 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:berberine bridge enzyme-like protein;
PDBTitle: structure of bbe-like #28 from arabidopsis thaliana
18c6f73B_
97.0 33
PDB header:flavoprotein
Chain: B: PDB Molecule:mtvao615;
PDBTitle: crystal structure of vao-type flavoprotein mtvao615 at ph 5.0 from2 myceliophthora thermophila c1
19c5fxpA_
96.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:eugenol oxidase;
PDBTitle: crystal structure of eugenol oxidase in complex with2 vanillin
20c2exrA_
96.8 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytokinin dehydrogenase 7;
PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx) from2 arabidopsis thaliana at5g21482
21c1i19B_
not modelled 96.6 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:cholesterol oxidase;
PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum
22c1wveB_
not modelled 96.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating]
PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit
23c3pm9A_
not modelled 96.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution
24c3js8A_
not modelled 96.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: solvent-stable cholesterol oxidase
25c4oalB_
not modelled 96.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytokinin dehydrogenase 4;
PDBTitle: crystal structure of maize cytokinin oxidase/dehydrogenase 4 (zmcko4)2 in complex with phenylurea inhibitor cppu in alternative spacegroup
26c6c80B_
not modelled 96.0 23
PDB header:immune system
Chain: B: PDB Molecule:cytokinin oxidase luckx1.1;
PDBTitle: crystal structure of a flax cytokinin oxidase
27c4bc9C_
not modelled 95.9 17
PDB header:transferase
Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase, peroxisomal;
PDBTitle: mammalian alkyldihydroxyacetonephosphate synthase: wild-type, adduct2 with cyanoethyl
28d1w1oa2
not modelled 95.6 23
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
29c4ml8C_
not modelled 95.6 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytokinin oxidase 2;
PDBTitle: structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
30c3bw7A_
not modelled 94.8 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytokinin dehydrogenase 1;
PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1
31d1wvfa2
not modelled 94.0 20
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
32c2uuvC_
not modelled 93.9 17
PDB header:transferase
Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase;
PDBTitle: alkyldihydroxyacetonephosphate synthase in p1
33d2i0ka2
not modelled 93.4 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
34c4ud8B_
not modelled 93.2 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:fad-binding and bbe domain-containing protein;
PDBTitle: atbbe15
35d1e8ga2
not modelled 91.7 16
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
36c2vfvA_
not modelled 85.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:xylitol oxidase;
PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite
37c1ahuB_
not modelled 77.5 18
PDB header:flavoenzyme
Chain: B: PDB Molecule:vanillyl-alcohol oxidase;
PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol
38d1f0xa2
not modelled 71.5 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
39d2cjra1
not modelled 65.8 14
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
40c2pq4B_
not modelled 63.7 31
PDB header:chaperone/oxidoreductase
Chain: B: PDB Molecule:periplasmic nitrate reductase precursor;
PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide
41c4fdoA_
not modelled 62.6 8
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:oxidoreductase dpre1;
PDBTitle: mycobacterium tuberculosis dpre1 in complex with ct319
42c1f0xA_
not modelled 61.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral membrane2 respiratory enzyme.
43d2giba1
not modelled 60.5 14
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
44c2e76D_
not modelled 58.1 16
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
45c4pytA_
not modelled 56.5 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: crystal structure of a murb family ep-udp-n-acetylglucosamine2 reductase
46d2ge7a1
not modelled 48.2 14
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
47c2fynO_
not modelled 42.9 24
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
48c2fyuE_
not modelled 37.0 9
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
49c6g13B_
not modelled 28.8 11
PDB header:viral protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: c-terminal domain of mers-cov nucleocapsid
50c1p84E_
not modelled 27.3 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
51d1uxya1
not modelled 22.7 15
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
52c6fo2R_
not modelled 19.9 10
PDB header:membrane protein
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cryoem structure of bovine cytochrome bc1 with no ligand bound
53d1hska1
not modelled 15.0 22
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
54d2ca1a1
not modelled 13.0 12
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
55c6f0gD_
not modelled 10.7 40
PDB header:chaperone
Chain: D: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
56c6f0gC_
not modelled 10.7 40
PDB header:chaperone
Chain: C: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
57c2l5aA_
not modelled 8.8 32
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3,
PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3
58d1nbaa_
not modelled 7.7 35
Fold:Isochorismatase-like hydrolases
Superfamily:Isochorismatase-like hydrolases
Family:Isochorismatase-like hydrolases
59c5whaF_
not modelled 7.3 5
PDB header:protein binding
Chain: F: PDB Molecule:miniprotein 225-11;
PDBTitle: kras g12v, bound to gdp and miniprotein 225-11
60d2cwja1
not modelled 6.0 12
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
61c5aj3i_
not modelled 5.8 20
PDB header:ribosome
Chain: I: PDB Molecule:mitoribosomal protein us9m, mrps9;
PDBTitle: structure of the small subunit of the mammalian mitoribosome

Binding site prediction 

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