Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3357_(-)_3770944_3771219
DateFri Aug 9 18:20:01 BST 2019
Unique Job ID008bb43b60e07789
SequenceMSISASEARQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.414 Y:54.232 Z:59.208
Model (left) based on template c3oeiB_
Top template information
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
Confidence and coverage
Confidence:100.0% Coverage:100%
91 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3oeiB_



100.0 100
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
2c3d55A_



99.9 100
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
3d2a6qa1



99.9 44
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
4c3g5oA_



99.9 28
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
5d2a6qb1



99.7 46
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3hs2H_



99.5 29
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
7c3hryA_



99.3 30
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
8c2odkD_



99.0 19
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
9d2odka1



98.9 17
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
10c3k6qB_



95.4 19
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c5ytpA_



53.0 22
PDB header:dna binding protein
Chain: A: PDB Molecule:ttha0139;
PDBTitle: crystal structure of ttha0139 l34a from thermus thermophilus hb8
12c4q2uM_



39.7 20
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
13d1n0ea_



34.5 14
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
14c3ia7A_



34.3 16
PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
15c1n0fF_



33.4 14
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
16c4q8jE_



33.2 11
PDB header:hydrolase
Chain: E: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan3;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
17c4cyiH_



31.7 9
PDB header:transferase
Chain: H: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan3-
PDBTitle: chaetomium thermophilum pan3
18c6r5kO_



30.8 11
PDB header:rna binding protein
Chain: O: PDB Molecule:pan2-pan3 deadenylation complex subunit pan3;
PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
19d1grja1



28.1 25
Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
20c6nklD_



25.2 13
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
21c1nexC_



not modelled 25.0 14
PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
22c2iyfA_



not modelled 24.7 25
PDB header:transferase
Chain: A: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
23c4bwpA_



not modelled 23.6 10
PDB header:gene regulation
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan-3;
PDBTitle: structure of drosophila melanogaster pan3 pseudokinase
24d2ovra1



not modelled 22.2 15
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
25c2ovqA_



not modelled 21.7 14
PDB header:transcription/cell cycle
Chain: A: PDB Molecule:s-phase kinase-associated protein 1a;
PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
26d1nexa1



not modelled 21.3 15
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
27c4xsuB_



not modelled 21.2 6
PDB header:transferase
Chain: B: PDB Molecule:alr3699 protein;
PDBTitle: crystal structure of anabaena alr3699/hepe in complex with udp and2 glucose
28d1y0ua_



not modelled 20.1 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
29c4ebrB_



not modelled 19.1 21
PDB header:ligase
Chain: B: PDB Molecule:ubiquitin-like-conjugating enzyme atg10;
PDBTitle: crystal structure of autophagic e2, atg10
30d1fs2b1



not modelled 18.2 15
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
31c4d0kC_



not modelled 17.5 9
PDB header:gene regulation
Chain: C: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit
PDBTitle: complex of chaetomium thermophilum pan2 (wd40-cs1) with pan3 (c-term)
32c5l6mA_



not modelled 17.3 5
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
33c2jjmH_



not modelled 16.6 16
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from bacillus2 anthracis orf ba1558.
34c2qzsA_



not modelled 16.1 8
PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp and2 glucose(wtgsb)
35d1rzua_



not modelled 15.4 13
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
36c3zvkG_



not modelled 14.6 12
PDB header:antitoxin/toxin/dna
Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
37c2p1nD_



not modelled 14.6 14
PDB header:signaling protein
Chain: D: PDB Molecule:skp1-like protein 1a;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
38c6ct6B_



not modelled 14.5 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate dehydrogenase;
PDBTitle: crystal structure of lactate dehydrogenase from eimeria maxima with2 nadh and oxamate
39c3iaaB_



not modelled 13.9 13
PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form
40d1ghca_



not modelled 13.7 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Linker histone H1/H5
41c3fiwB_



not modelled 13.5 13
PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
42c4bwxB_



not modelled 13.4 10
PDB header:gene regulation
Chain: B: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan-3;
PDBTitle: structure of neurospora crassa pan3 pseudokinase mutant
43c5d00A_



not modelled 13.4 14
PDB header:transferase
Chain: A: PDB Molecule:n-acetyl-alpha-d-glucosaminyl l-malate synthase;
PDBTitle: crystal structure of bsha from b. subtilis complexed with n-2 acetylglucosaminyl-malate and ump
44c2fy2A_



not modelled 13.0 18
PDB header:transferase
Chain: A: PDB Molecule:choline o-acetyltransferase;
PDBTitle: structures of ligand bound human choline acetyltransferase provide2 insight into regulation of acetylcholine synthesis
45c2p6pB_



not modelled 12.5 16
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
46c5zmyF_



not modelled 12.3 14
PDB header:hydrolase
Chain: F: PDB Molecule:cis-epoxysuccinate hydrolase;
PDBTitle: crystal structure of a cis-epoxysuccinate hydrolase producing d(-)-2 tartaric acids
47c2m4hA_



not modelled 12.2 42
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
48c6d9tA_



not modelled 12.0 14
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase;
PDBTitle: bsha from staphylococcus aureus complexed with udp
49d1ez4a2



not modelled 11.9 9
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
50c3ctoE_



not modelled 11.8 100
PDB header:toxin inhibitor
Chain: E: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
51c3okaA_



not modelled 11.7 14
PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
52c3himA_



not modelled 11.4 14
PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a
53d1ui5a1



not modelled 11.3 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
54c1grjA_



not modelled 11.0 24
PDB header:transcription regulation
Chain: A: PDB Molecule:grea protein;
PDBTitle: grea transcript cleavage factor from escherichia coli
55c2dg7A_



not modelled 11.0 25
PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
56c3tndF_



not modelled 10.6 15
PDB header:translation, toxin
Chain: F: PDB Molecule:antitoxin vapb;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
57c5du2B_



not modelled 10.1 14
PDB header:transferase
Chain: B: PDB Molecule:espg2 glycosyltransferase;
PDBTitle: structural analysis of espg2 glycosyltransferase
58d2id3a1



not modelled 10.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
59c2ktlA_



not modelled 10.0 14
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans
60c4qxzA_



not modelled 9.9 18
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein from staphylococcus aureus
61c2hxoB_



not modelled 9.8 15
PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of the transcriptional regulator sco7222, a tetr from2 streptomyces coelicolor
62d2i10a1



not modelled 9.7 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
63c5d5nA_



not modelled 9.5 13
PDB header:viral protein
Chain: A: PDB Molecule:virion egress protein ul34 homolog;
PDBTitle: crystal structure of the human cytomegalovirus pul50-pul53 complex
64d2fq4a1



not modelled 8.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
65c3msqC_



not modelled 8.7 33
PDB header:biosynthetic protein
Chain: C: PDB Molecule:putative ubiquinone biosynthesis protein;
PDBTitle: crystal structure of a putative ubiquinone biosynthesis protein2 (npun02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution
66c2p4vA_



not modelled 8.5 18
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
67c2iyaB_



not modelled 8.0 19
PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a blueprint2 for antibiotic engineering
68c5xvmB_



not modelled 8.0 5
PDB header:transferase
Chain: B: PDB Molecule:sterol 3-beta-glucosyltransferase;
PDBTitle: sterol 3-beta-glucosyltransferase (ugt51) from saccharomyces2 cerevisiae (strain atcc 204508 / s288c)
69c3s29C_



not modelled 7.7 14
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
70d1lvaa3



not modelled 7.7 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
71c3beoA_



not modelled 7.7 16
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: a structural basis for the allosteric regulation of non-2 hydrolyzing udp-glcnac 2-epimerases
72c3wadA_



not modelled 7.4 17
PDB header:transferase
Chain: A: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of glycosyltransferase vinc involved in the2 biosynthesis of vicenistatin
73c5hjzA_



not modelled 7.3 31
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
74c2mxdA_



not modelled 7.2 35
PDB header:viral protein
Chain: A: PDB Molecule:viral protein genome-linked;
PDBTitle: solution structure of vpg of porcine sapovirus
75d1f6da_



not modelled 7.1 16
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
76c4leiB_



not modelled 7.1 16
PDB header:transferase
Chain: B: PDB Molecule:ndp-forosamyltransferase;
PDBTitle: spinosyn forosaminyltransferase spnp
77d1o6ca_



not modelled 7.0 23
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
78c3no5C_



not modelled 6.9 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution
79c6expD_



not modelled 6.9 11
PDB header:viral protein
Chain: D: PDB Molecule:sirv3 acrid1 (gp02) anti-crispr protein;
PDBTitle: crystal structure of the sirv3 acrid1 (gp02) anti-crispr protein
80c5ngwA_



not modelled 6.9 6
PDB header:hydrolase
Chain: A: PDB Molecule:opgh99a;
PDBTitle: glycoside hydrolase-like protein
81d1rp3a1



not modelled 6.8 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
82c5d17L_



not modelled 6.7 21
PDB header:dna binding protein
Chain: L: PDB Molecule:transposon tn7 transposition protein tnse;
PDBTitle: structure of the c-terminal domain of tnse at 2.85 resolution
83c5yhhA_



not modelled 6.7 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized conserved protein yiim;
PDBTitle: crystal structure of yiim from geobacillus stearothermophilus
84d1nm8a1



not modelled 6.3 9
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
85c3ot5D_



not modelled 6.2 21
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
86d1g8ma1



not modelled 6.2 11
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
87c4e1pA_



not modelled 6.2 27
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 1 21 1 space group
88c4e1rA_



not modelled 6.2 27
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 31 2 1 space group
89c6ejiA_



not modelled 6.0 14
PDB header:transferase
Chain: A: PDB Molecule:wlac protein;
PDBTitle: structure of a glycosyltransferase
90c3iuvA_



not modelled 6.0 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
91c6fqbE_



not modelled 6.0 19
PDB header:ligase
Chain: E: PDB Molecule:cobyric acid synthase;
PDBTitle: murt/gatd peptidoglycan amidotransferase complex from streptococcus2 pneumoniae r6
92c2qkoA_



not modelled 5.9 21
PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of transcriptional regulator rha06399 from2 rhodococcus sp. rha1
93c5gl5B_



not modelled 5.9 5
PDB header:transferase
Chain: B: PDB Molecule:sterol 3-beta-glucosyltransferase;
PDBTitle: sterol 3-beta-glucosyltransferase (ugt51) from saccharomyces2 cerevisiae (strain atcc 204508 / s288c): udpg complex
94d1m1fa_



not modelled 5.8 0
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
95c3kb4D_



not modelled 5.7 14
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr8543 protein;
PDBTitle: crystal structure of the alr8543 protein in complex with2 geranylgeranyl monophosphate and magnesium ion from nostoc sp. pcc3 7120, northeast structural genomics consortium target nsr141
96c3co5B_



not modelled 5.5 32
PDB header:transcription regulator
Chain: B: PDB Molecule:putative two-component system transcriptional response
PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae
97d1j2ga2



not modelled 5.4 25
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:Urate oxidase (uricase)
98d1vi0a1



not modelled 5.2 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
99d2csua2



not modelled 5.1 11
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains

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