Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3358_(-)_3771216_3771473
DateFri Aug 9 18:20:02 BST 2019
Unique Job ID72145dd49612d2fa
SequenceVRSVNFDPDA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.120 Y:30.896 Z:36.965
Model (left) based on template c3oeiH_
Top template information
PDB header:toxin, protein binding
Chain: H: PDB Molecule:relk (toxin rv3358);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
Confidence and coverage
Confidence:100.0% Coverage:100%
85 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3oeiH_



100.0 100
PDB header:toxin, protein binding
Chain: H: PDB Molecule:relk (toxin rv3358);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
2d2a6sa1



100.0 45
Fold:RelE-like
Superfamily:RelE-like
Family:YoeB/Txe-like
3c4q2uH_



99.9 18
PDB header:toxin/toxin repressor
Chain: H: PDB Molecule:mrna interferase yafq;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
4d1z8ma1



99.9 20
Fold:RelE-like
Superfamily:RelE-like
Family:RelE-like
5c2otrA_



99.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hp0892;
PDBTitle: solution structure of conserved hypothetical protein hp0892 from2 helicobacter pylori
6c2kheA_



99.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:toxin-like protein;
PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8
7c3bpqD_



99.3 17
PDB header:toxin
Chain: D: PDB Molecule:toxin rele3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
8d1wmia1



99.2 15
Fold:RelE-like
Superfamily:RelE-like
Family:RelE-like
9c3g5oC_



99.2 27
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:uncharacterized protein rv2866;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
10c3kixy_



98.6 18
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: structure of rele nuclease bound to the 70s ribosome (postcleavage2 state; part 3 of 4)
11c4mctD_



98.5 23
PDB header:toxin
Chain: D: PDB Molecule:killer protein;
PDBTitle: p. vulgaris higba structure, crystal form 1
12c5cw7H_



98.0 13
PDB header:toxin
Chain: H: PDB Molecule:plasmid stabilization protein pare;
PDBTitle: crystal structure of the paaa2-pare2 antitoxin-toxin complex
13c5cegB_



97.9 18
PDB header:toxin
Chain: B: PDB Molecule:plasmid stabilization system;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
14c3kxeB_



97.7 21
PDB header:protein binding
Chain: B: PDB Molecule:toxin protein pare-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
15c5ja9D_



95.8 18
PDB header:toxin
Chain: D: PDB Molecule:toxin higb-2;
PDBTitle: crystal structure of the higb2 toxin in complex with nb6
16c6f8sD_



95.7 17
PDB header:toxin
Chain: D: PDB Molecule:putative killer protein;
PDBTitle: toxin-antitoxin complex grata
17d3e9va1



39.3 17
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
18c2lo0B_



32.6 27
PDB header:protein binding
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the get5 carboxyl domain from a. fumigatus
19d2z15a1



26.9 17
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
20d1khba2



23.6 26
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
21c5j10A_



not modelled 20.0 32
PDB header:de novo protein
Chain: A: PDB Molecule:peptide design 2l4hc2_24;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
22d1s0ua2



not modelled 16.0 45
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
23d3bb9a1



not modelled 15.7 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
24c3sjaG_



not modelled 15.5 19
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:golgi to er traffic protein 1;
PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain
25d2qn6a2



not modelled 15.3 36
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
26d1kk1a2



not modelled 14.4 45
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
27c3sjbC_



not modelled 13.4 18
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:golgi to er traffic protein 1;
PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain
28c1rb8J_



not modelled 13.1 40
PDB header:virus/dna
Chain: J: PDB Molecule:small core protein;
PDBTitle: the phix174 dna binding protein j in two different capsid2 environments.
29c2kruA_



not modelled 12.0 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: solution nmr structure of the pcp_red domain of light-independent2 protochlorophyllide reductase subunit b from chlorobium tepidum.3 northeast structural genomics consortium target ctr69a
30d2gykb1



not modelled 11.7 10
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
31c5td6A_



not modelled 11.4 17
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
32c3e56A_



not modelled 10.3 29
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 2.0 angstrom resolution crystal structure of npr1517, a putative2 heterocyst differentiation inhibitor from nostoc punctiforme
33c2fh0A_



not modelled 10.3 11
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical 16.0 kda protein in abf2-chl12
PDBTitle: nmr ensemble of the yeast saccharomyces cerevisiae protein2 ymr074cp core region
34d1eija_



not modelled 10.0 11
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
35c2qeyA_



not modelled 9.9 24
PDB header:lyase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxykinase, cytosolic [gtp];
PDBTitle: rat cytosolic pepck in complex with gtp
36c1wmvA_



not modelled 9.6 21
PDB header:oxidoreductase, apoptosis
Chain: A: PDB Molecule:ww domain containing oxidoreductase;
PDBTitle: solution structure of the second ww domain of wwox
37d2d5ua1



not modelled 9.5 13
Fold:PUG domain-like
Superfamily:PUG domain-like
Family:PUG domain
38c2dogA_



not modelled 9.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable 16s rrna-processing protein rimm;
PDBTitle: solution structure of the n-terminal domain of rimm from thermus2 thermophilus hb8
39d2crua1



not modelled 7.7 11
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
40d2ux0a1



not modelled 7.4 37
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
41c6iqcA_



not modelled 7.2 11
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein sso0352;
PDBTitle: wild-type programmed cell death 5 protein from sulfolobus solfataricus
42c3d7iB_



not modelled 6.9 17
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
43c6ms4B_



not modelled 6.5 12
PDB header:translation
Chain: B: PDB Molecule:density-regulated protein;
PDBTitle: crystal structure of the denr-mct-1 complex
44d1ejxb_



not modelled 6.4 29
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
45c4gicB_



not modelled 6.2 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of a putative histidinol dehydrogenase (target psi-2 014034) from methylococcus capsulatus
46c4z42B_



not modelled 5.9 14
PDB header:hydrolase
Chain: B: PDB Molecule:urease subunit beta;
PDBTitle: crystal structure of urease from yersinia enterocolitica
47d2jb0b1



not modelled 5.8 11
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
48c2wx4C_



not modelled 5.7 9
PDB header:structural protein
Chain: C: PDB Molecule:decapping protein 1;
PDBTitle: asymmetric trimer of the drosophila melanogaster dcp1 c-2 terminal domain
49c2l4jA_



not modelled 5.6 29
PDB header:transcription
Chain: A: PDB Molecule:yes-associated protein 2 (yap2);
PDBTitle: yap ww2
50c2l09A_



not modelled 5.5 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:asr4154 protein;
PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143
51d4ubpb_



not modelled 5.5 14
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
52c2jxnA_



not modelled 5.4 11
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein ymr074c;
PDBTitle: solution structure of s. cerevisiae pdcd5-like protein ymr074cp
53c5nb9A_



not modelled 5.3 28
PDB header:rna
Chain: A: PDB Molecule:rna chaperone proq;
PDBTitle: structure of the n-terminal domain of the escherichia coli proq rna2 binding protein

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