Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3366_(spoU)_3777908_3778372
DateFri Aug 9 18:20:03 BST 2019
Unique Job ID407eff1a76ed143f
SequenceMFRLLFVSPR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.044 Y:46.800 Z:40.731
Model (left) based on template d1mxia_
Top template information
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
Confidence and coverage
Confidence:100.0% Coverage:100%
154 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1mxia_



100.0 47
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
2c4pzkA_



100.0 40
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: crystal strucrure of putative rna methyltransferase from bacillus2 anthracis.
3c1gz0H_



100.0 19
PDB header:transferase
Chain: H: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
4c5co4A_



100.0 49
PDB header:transferase
Chain: A: PDB Molecule:putative trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: structural insights into the 2-oh methylation of c/u34 on trna
5c1x7pB_



100.0 26
PDB header:transferase
Chain: B: PDB Molecule:rrna methyltransferase;
PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet
6c4x3mB_



100.0 31
PDB header:transferase
Chain: B: PDB Molecule:rna 2'-o ribose methyltransferase;
PDBTitle: crystal structure of ttha0275 from thermus thermophilus (hb8) in2 complex with adenosine in space group p212121
7c1gz0G_



100.0 19
PDB header:transferase
Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
8d1gz0a1



100.0 19
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
9c1ipaA_



100.0 32
PDB header:transferase
Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase;
PDBTitle: crystal structure of rna 2'-o ribose methyltransferase
10c2i6dA_



100.0 21
PDB header:transferase
Chain: A: PDB Molecule:rna methyltransferase, trmh family;
PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis.
11c3e5yB_



100.0 49
PDB header:transferase
Chain: B: PDB Molecule:trmh family rna methyltransferase;
PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei
12c5kzkA_



100.0 22
PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna methyltransferase, trmh family;
PDBTitle: crystal structure of rrna methyltransferase from sinorhizobium2 meliloti
13c3gyqB_



100.0 21
PDB header:transferase
Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase;
PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex
14d1ipaa1



100.0 33
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
15d1v2xa_



100.0 29
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
16c1zjrA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase;
PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme
17c3l8uA_



100.0 34
PDB header:transferase
Chain: A: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159
18c2ha8A_



100.0 18
PDB header:rna binding protein
Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein;
PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1
19c3onpA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:trna/rrna methyltransferase (spou);
PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides
20c3ic6A_



100.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative methylase family protein;
PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae
21c5gm8A_



not modelled 100.0 25
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: methylation at position 32 of trna catalyzed by trmj alters oxidative2 stress response in pseudomonas aeruiginosa
22c4xboA_



not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of full length e.coli trmj in complex with sah
23c5graA_



not modelled 100.0 25
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of trmj from z. mobilis zm4
24c3ilkB_



not modelled 100.0 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380;
PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20
25c4cngB_



not modelled 100.0 21
PDB header:transferase
Chain: B: PDB Molecule:spou rrna methylase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trmj in2 complex with s-adenosyl-l-homocysteine
26c3ktyA_



not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:probable methyltransferase;
PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i
27c4cndB_



not modelled 100.0 20
PDB header:transferase
Chain: B: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of e.coli trmj
28c3dcmX_



not modelled 99.9 17
PDB header:transferase
Chain: X: PDB Molecule:uncharacterized protein tm_1570;
PDBTitle: crystal structure of the thermotoga maritima spout family rna-2 methyltransferase protein tm1570 in complex with s-adenosyl-l-3 methionine
29c6ahwB_



not modelled 99.9 47
PDB header:transferase
Chain: B: PDB Molecule:circular-permutated trna (cytidine(34)-2'-o)-
PDBTitle: crystal structure of circular-permutated yibk methyltransferase from2 haemophilus influenzae
30d1vhka2



not modelled 97.4 12
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
31c2yy8B_



not modelled 97.2 11
PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
32c1vhkA_



not modelled 97.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yqeu;
PDBTitle: crystal structure of an hypothetical protein
33c1vhyB_



not modelled 96.7 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein hi0303;
PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558
34d1nxza2



not modelled 96.2 17
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
35d2o3aa1



not modelled 95.9 12
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
36c2egwB_



not modelled 95.4 11
PDB header:rna methyltransferase
Chain: B: PDB Molecule:upf0088 protein aq_165;
PDBTitle: crystal structure of rrna methyltransferase with sah ligand
37c5o96F_



not modelled 95.3 15
PDB header:transferase
Chain: F: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: structure of the putative methyltransferase lpg2936 from legionella2 pneumophila in complex with the bound cofactor sam
38c4j3cB_



not modelled 94.8 17
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s ribosomal rna methyltransferase rsme
39c4e8bA_



not modelled 94.7 18
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s rrna methyltransferase rsme from e.coli
40c5vm8A_



not modelled 94.7 13
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of a ribosomal rna small subunit methyltransferase e2 from neisseria gonorrhoeae bound to s-adenosyl methionine
41c3kw2A_



not modelled 92.5 8
PDB header:transferase
Chain: A: PDB Molecule:probable r-rna methyltransferase;
PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
42d1v6za2



not modelled 91.9 16
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
43c1z85B_



not modelled 91.2 17
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein tm1380;
PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution
44c4l69A_



not modelled 90.2 20
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: rv2372c of mycobacterium tuberculosis is rsme like methyltransferse
45c2cx8A_



not modelled 89.3 17
PDB header:transferase
Chain: A: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
46c3ai9X_



not modelled 82.4 9
PDB header:transferase
Chain: X: PDB Molecule:upf0217 protein mj1640;
PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase
47d1k3ra2



not modelled 81.6 19
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:Hypothetical protein MTH1 (MT0001), dimerisation domain
48c2cx8B_



not modelled 77.9 14
PDB header:transferase
Chain: B: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
49d1saza1



not modelled 75.4 23
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
50d2qmma1



not modelled 74.3 15
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
51d2qwva1



not modelled 66.5 10
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
52c1k3rA_



not modelled 61.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein mt0001;
PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum
53d1otha2



not modelled 52.5 13
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
54c4rg1A_



not modelled 47.4 24
PDB header:transferase
Chain: A: PDB Molecule:c9orf114;
PDBTitle: methyltransferase domain of c9orf114
55c4fmwA_



not modelled 45.4 15
PDB header:transferase
Chain: A: PDB Molecule:rna (guanine-9-)-methyltransferase domain-containing
PDBTitle: crystal structure of methyltransferase domain of human rna (guanine-9-2 ) methyltransferase domain containing protein 2
56d1pvva2



not modelled 36.0 13
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
57c4jwhB_



not modelled 34.3 8
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sptrm10(full length)-sah complex
58d1duvg2



not modelled 33.5 18
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
59c4jwjA_



not modelled 32.7 18
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sctrm10(84)-sah complex
60d1vlva2



not modelled 32.2 16
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
61d1ml4a2



not modelled 22.5 11
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
62c2e2kC_



not modelled 22.0 15
PDB header:hydrolase
Chain: C: PDB Molecule:formamidase;
PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad
63c2w37A_



not modelled 20.2 17
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic;
PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii
64c3j1rD_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
65c3j1rO_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
66c3j1rC_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
67c3j1rR_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
68c3j1rH_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
69c3j1rL_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
70c3j1rT_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
71c3j1rM_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
72c3j1rF_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
73c3j1rN_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
74c3j1rB_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
75c3j1rP_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
76c3j1rI_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
77c3j1rS_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
78c3j1rA_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
79c3j1rK_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
80c3j1rG_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
81c3j1rJ_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
82c3j1rQ_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
83c3j1rE_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
84c3j1rU_



not modelled 18.8 38
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
85c1a1sA_



not modelled 17.9 13
PDB header:transcarbamylase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: ornithine carbamoyltransferase from pyrococcus furiosus
86d1dxha2



not modelled 14.5 10
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
87c2n9rA_



not modelled 12.3 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide padbs1r1;
PDBTitle: novel antimicrobial peptide padbs1r1 designed from the ribosomal2 protein l39e from pyrobaculum aerophilum using bioinformatics
88c5nfjA_



not modelled 11.0 16
PDB header:transferase
Chain: A: PDB Molecule:mitochondrial ribonuclease p protein 1;
PDBTitle: crystal structure of the methyltransferase subunit of human2 mitochondrial ribonuclease p (mrpp1) bound to s-adenosyl-methionine3 (sam)
89c3d6nB_



not modelled 10.5 12
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:aspartate carbamoyltransferase;
PDBTitle: crystal structure of aquifex dihydroorotase activated by aspartate2 transcarbamoylase
90c1fvoB_



not modelled 10.2 11
PDB header:transferase
Chain: B: PDB Molecule:ornithine transcarbamylase;
PDBTitle: crystal structure of human ornithine transcarbamylase complexed with2 carbamoyl phosphate
91c4ep1B_



not modelled 10.2 13
PDB header:transferase
Chain: B: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of anabolic ornithine carbamoyltransferase from2 bacillus anthracis
92c1vlvA_



not modelled 10.1 14
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution
93d2ivya1



not modelled 9.0 13
Fold:Ferredoxin-like
Superfamily:TTP0101/SSO1404-like
Family:TTP0101/SSO1404-like
94c2vhiG_



not modelled 8.8 11
PDB header:hydrolase
Chain: G: PDB Molecule:cg3027-pa;
PDBTitle: crystal structure of a pyrimidine degrading enzyme from2 drosophila melanogaster
95d1pg5a2



not modelled 8.7 6
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
96d1ekxa2



not modelled 8.6 11
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
97c3updA_



not modelled 8.0 12
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus
98c6emvA_



not modelled 7.6 9
PDB header:rna binding protein
Chain: A: PDB Molecule:trna (guanine(9)-/adenine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of dual specific trm10 construct from thermococcus2 kodakaraensis.
99c2ef0A_



not modelled 7.2 15
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from thermus2 thermophilus

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