Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3369_(-)_3781158_3781592
DateFri Aug 9 18:20:03 BST 2019
Unique Job IDcc89dfe7dd3f596e
SequenceMWAGYRWAMS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.019 Y:29.053 Z:40.185
Model (left) based on template c3f7eB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
Confidence and coverage
Confidence: 99.9% Coverage: 85%
123 residues ( 85% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3f7eB_



99.9 23
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
2d1w9aa_



99.9 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
3d1rfea_



99.9 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
4d2asfa1



99.9 23
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
5c2iabB_



99.9 20
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
6c3tgvD_



99.9 18
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
7c4zkyB_



99.9 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
8c3db0B_



99.9 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
9d2i02a1



99.9 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
10d2fhqa1



99.9 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
11c3ec6A_



99.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
12d2hq7a1



99.9 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
13d2fg9a1



99.9 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
14c2re7A_



99.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
15d2hq9a1



99.9 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
16d1vl7a_



99.9 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
17c3u0iA_



99.9 10
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
18c2htdB_



99.9 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
19d2htia1



99.8 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
20c2htiA_



99.8 16
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
21c5escD_



not modelled 99.8 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
22c3fkhB_



not modelled 99.8 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
23c6eciQ_



not modelled 99.8 15
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
24d2arza1



not modelled 99.8 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
25c3u34D_



not modelled 99.8 13
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
26c2qeaB_



not modelled 99.8 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
27c2ig6B_



not modelled 99.8 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
28c5bncB_



not modelled 99.8 14
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
29c3dmbA_



not modelled 99.8 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
30c2hhzA_



not modelled 99.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
31d2fura1



not modelled 99.8 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
32d1flma_



not modelled 99.8 23
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
33c2q9kA_



not modelled 99.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
34c3gasA_



not modelled 99.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
35c3cp3A_



not modelled 99.8 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
36c3dnhB_



not modelled 99.8 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
37c4ybnB_



not modelled 99.8 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
38d2vpaa1



not modelled 99.7 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
39c6rk0A_



not modelled 99.7 11
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
40d1t9ma_



not modelled 99.7 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
41d1ty9a_



not modelled 99.7 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42c4hmwB_



not modelled 99.6 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
43d1dnla_



not modelled 99.6 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
44c1nrgA_



not modelled 99.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
45d1nrga_



not modelled 99.6 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
46d2a2ja1



not modelled 99.6 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
47c2a2jA_



not modelled 99.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
48c2ou5B_



not modelled 99.6 18
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
49c2ol5B_



not modelled 99.5 12
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
50d1xhna1



not modelled 99.5 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
51c2i51B_



not modelled 99.4 19
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
52d1ci0a_



not modelled 99.3 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
53c4n7rD_



not modelled 99.1 14
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
54c3r5zB_



not modelled 98.7 19
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
55c3r5yC_



not modelled 98.6 19
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
56c3r5wO_



not modelled 98.6 18
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
57c3h96B_



not modelled 98.6 14
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
58c3ba3A_



not modelled 98.4 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-like protein;
PDBTitle: crystal structure of pyridoxamine 5'-phosphate oxidase-like protein2 (np_783940.1) from lactobacillus plantarum at 1.55 a resolution
59c4y9iA_



not modelled 98.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
60d2ptfa1



not modelled 97.0 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
61c2ptfB_



not modelled 96.5 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mth_863;
PDBTitle: crystal structure of protein mth_863 from methanobacterium2 thermoautotrophicum bound to fmn
62d2imla1



not modelled 95.7 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
63c3b5mD_



not modelled 94.6 9
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved uncharacterized protein from2 rhodopirellula baltica
64c3fgeA_



not modelled 93.8 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative flavin reductase with split barrel domain;
PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution
65d2nr4a1



not modelled 93.0 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
66d1ejea_



not modelled 92.9 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
67c3bpkB_



not modelled 92.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b from2 bacillus cereus
68c3e4vA_



not modelled 92.4 11
PDB header:flavoprotein
Chain: A: PDB Molecule:nadh:fmn oxidoreductase like protein;
PDBTitle: crystal structure of nadh:fmn oxidoreductase like protein in complex2 with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a3 resolution
69c4z85A_



not modelled 91.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitrobenzoate nitroreductase;
PDBTitle: crystal structur of pseudomonas fluorescens 2-nitrobenzoate 2-2 nitroreductase nbaa
70c2d5mA_



not modelled 83.9 13
PDB header:electron transport
Chain: A: PDB Molecule:flavoredoxin;
PDBTitle: flavoredoxin of desulfovibrio vulgaris (miyazaki f)
71c4f07A_



not modelled 80.2 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:styrene monooxygenase component 2;
PDBTitle: structure of the styrene monooxygenase flavin reductase (smob) from2 pseudomonas putida s12
72c4l82D_



not modelled 77.3 3
PDB header:oxidoreductase
Chain: D: PDB Molecule:rifea.00250.a;
PDBTitle: structure of a putative oxidoreductase from rickettsia felis
73c3bnkB_



not modelled 76.5 15
PDB header:electron transport
Chain: B: PDB Molecule:flavoredoxin;
PDBTitle: x-ray crystal structure of flavoredoxin from methanosarcina2 acetivorans
74c3hmzA_



not modelled 72.5 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding;
PDBTitle: crystal structure of a fmn-binding domain of flavin reductases-like2 enzyme (sbal_0626) from shewanella baltica os155 at 1.50 a resolution
75c2d38A_



not modelled 69.5 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical nadh-dependent fmn oxidoreductase;
PDBTitle: the crystal structure of flavin reductase hpac complexed with nadp+
76c2qckA_



not modelled 68.6 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein;
PDBTitle: crystal structure of flavin reductase domain protein (yp_831077.1)2 from arthrobacter sp. fb24 at 1.90 a resolution
77c4xhyA_



not modelled 68.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding protein;
PDBTitle: nadh:fmn oxidoreductase from paracoccus denitrificans
78c3pftA_



not modelled 68.4 4
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
79c3rh7A_



not modelled 64.8 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
80c3cb0B_



not modelled 62.9 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase;
PDBTitle: cobr
81d1usca_



not modelled 59.3 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
82c2r6vA_



not modelled 57.2 11
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein ph0856;
PDBTitle: crystal structure of fmn-binding protein (np_142786.1) from pyrococcus2 horikoshii at 1.35 a resolution
83d1i0ra_



not modelled 55.2 8
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
84d1rz0a_



not modelled 54.3 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
85c3k87B_



not modelled 50.9 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1;
PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex
86c2r0xA_



not modelled 47.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
87c3ipzA_



not modelled 47.2 16
PDB header:electron transport, oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic;
PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp
88c2ecrA_



not modelled 43.4 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase component (hpac) of 4-hydroxyphenylacetate
PDBTitle: crystal structure of the ligand-free form of the flavin reductase2 component (hpac) of 4-hydroxyphenylacetate 3-monooxygenase
89d2d9ra1



not modelled 42.3 13
Fold:Double-split beta-barrel
Superfamily:AF2212/PG0164-like
Family:PG0164-like
90d1wgba_



not modelled 36.9 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
91c3nfwB_



not modelled 36.8 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin reductase-like, fmn-binding protein;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b2 (a0r521 homolog) from mycobacterium thermoresistibile
92d1e5ra_



not modelled 28.6 9
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Type II Proline 3-hydroxylase (proline oxidase)
93c4p7xA_



not modelled 24.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-proline cis-4-hydroxylase;
PDBTitle: l-pipecolic acid-bound l-proline cis-4-hydroxylase
94c4hx6D_



not modelled 24.7 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase;
PDBTitle: streptomyces globisporus c-1027 nadh:fad oxidoreductase sgce6
95c3zywB_



not modelled 19.8 10
PDB header:metal binding protein
Chain: B: PDB Molecule:glutaredoxin-3;
PDBTitle: crystal structure of the first glutaredoxin domain of human2 glutaredoxin 3 (glrx3)
96d1qnaa2



not modelled 18.2 22
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
97d1aisa2



not modelled 17.8 25
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
98d1nh2a2



not modelled 16.8 19
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
99d2es2a1



not modelled 15.1 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite