Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3378c_(-)_3792538_3793428
DateFri Aug 9 18:20:04 BST 2019
Unique Job IDc1b424aefddd301e
SequenceMNLVSEKEFL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.243 Y:51.461 Z:65.530
Model (left) based on template c4cmxB_
Top template information
PDB header:nuclear protein
Chain: B: PDB Molecule:rv3378c;
PDBTitle: crystal structure of rv3378c
Confidence and coverage
Confidence:100.0% Coverage: 98%
291 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4cmxB_
100.0 100
PDB header:nuclear protein
Chain: B: PDB Molecule:rv3378c;
PDBTitle: crystal structure of rv3378c
2c6acsA_
98.9 18
PDB header:transferase
Chain: A: PDB Molecule:ditrans,polycis-undecaprenyl-diphosphate synthase ((2e,6e)-
PDBTitle: poly-cis-prenyltransferase
3c4h8eA_
98.6 13
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of s. aureus undecaprenyl diphosphate synthase in complex2 with fpp and sulfate
4c2vg2C_
98.5 15
PDB header:transferase
Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase;
PDBTitle: rv2361 with ipp
5c5hc7A_
98.5 14
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:prenyltransference for protein;
PDBTitle: crystal structure of lavandulyl diphosphate synthase from lavandula x2 intermedia in complex with s-thiolo-isopentenyldiphosphate
6c5hxpA_
98.4 20
PDB header:transferase
Chain: A: PDB Molecule:(2z,6z)-farnesyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of z,z-farnesyl diphosphate synthase (d71m, e75a and2 h103y mutants) complexed with ipp
7c4q9mA_
98.4 16
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:isoprenyl transferase;
PDBTitle: crystal structure of upps in complex with fpp and an allosteric2 inhibitor
8d1f75a_
98.3 16
Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
9d1ueha_
98.3 17
Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
10c3ugsB_
98.3 15
PDB header:transferase
Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni
11c1jp3A_
98.2 17
PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase
12c2d2rA_
98.2 18
PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase
13c2vfwB_
98.1 19
PDB header:transferase
Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase;
PDBTitle: rv1086 native
14c5xk9F_
97.7 18
PDB header:transferase
Chain: F: PDB Molecule:undecaprenyl diphosphate synthase;
PDBTitle: crystal structure of isosesquilavandulyl diphosphate synthase from2 streptomyces sp. strain cnh-189 in complex with gspp and dmapp
15c5gukA_
97.1 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cyclolavandulyl diphosphate synthase;
PDBTitle: crystal structure of apo form of cyclolavandulyl diphosphate synthase2 (clds) from streptomyces sp. cl190
16d1jhfa1
68.7 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
17c6jcnB_
58.3 11
PDB header:transferase
Chain: B: PDB Molecule:dehydrodolichyl diphosphate synthase complex subunit nus1;
PDBTitle: yeast dehydrodolichyl diphosphate synthase complex subunit nus1
18c4kvjA_
45.1 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:fatty acid alpha-oxidase;
PDBTitle: crystal structure of oryza sativa fatty acid alpha-dioxygenase with2 hydrogen peroxide
19c5iq5A_
44.4 20
PDB header:viral protein
Chain: A: PDB Molecule:macro domain;
PDBTitle: nmr solution structure of mayaro virus macro domain
20c2kmuA_
38.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase q4;
PDBTitle: recql4 amino-terminal domain
21d1k8ba_
not modelled 37.9 19
Fold:Ribosome binding domain-like
Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
22d1xo1a2
not modelled 31.9 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
23d1qwga_
not modelled 30.7 24
Fold:TIM beta/alpha-barrel
Superfamily:(2r)-phospho-3-sulfolactate synthase ComA
Family:(2r)-phospho-3-sulfolactate synthase ComA
24c6b1zA_
not modelled 30.7 21
PDB header:ligase
Chain: A: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of glutamate-trna synthetase from elizabethkingia2 anophelis
25c2e9hA_
not modelled 30.2 30
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5
26c5hr4J_
not modelled 26.9 24
PDB header:hydrolase/dna
Chain: J: PDB Molecule:mmei;
PDBTitle: structure of type iil restriction-modification enzyme mmei in complex2 with dna has implications for engineering of new specificities
27c3ff4A_
not modelled 26.5 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
28d1cvua1
not modelled 25.7 10
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Myeloperoxidase-like
29c1ddxA_
not modelled 25.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (prostaglandin h2 synthase-2);
PDBTitle: crystal structure of a mixture of arachidonic acid and prostaglandin2 bound to the cyclooxygenase active site of cox-2: prostaglandin3 structure
30c5bthA_
not modelled 24.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:decapping nuclease rai1;
PDBTitle: crystal structure of candida albicans rai1
31c1oheA_
not modelled 24.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
32c1pggB_
not modelled 23.6 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:prostaglandin h2 synthase-1;
PDBTitle: prostaglandin h2 synthase-1 complexed with 1-(4-iodobenzoyl)-5-2 methoxy-2-methylindole-3-acetic acid (iodoindomethacin), trans model
33c1ht8B_
not modelled 23.5 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:prostaglandin h2 synthase-1;
PDBTitle: the 2.7 angstrom resolution model of ovine cox-1 complexed with2 alclofenac
34d1bdga2
not modelled 22.9 14
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
35c3pghD_
not modelled 22.6 10
PDB header:oxidoreductase
Chain: D: PDB Molecule:cyclooxygenase-2;
PDBTitle: cyclooxygenase-2 (prostaglandin synthase-2) complexed with a non-2 selective inhibitor, flurbiprofen
36c6md3F_
not modelled 22.4 17
PDB header:hydrolase/rna
Chain: F: PDB Molecule:rrp44p homologue;
PDBTitle: structure of t. brucei rrp44 pin domain
37d1q4ga1
not modelled 22.1 17
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Myeloperoxidase-like
38c1ig8A_
not modelled 21.7 24
PDB header:transferase
Chain: A: PDB Molecule:hexokinase pii;
PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence
39c4zwjA_
not modelled 21.0 26
PDB header:signaling protein
Chain: A: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
40c3gebC_
not modelled 20.8 25
PDB header:hydrolase
Chain: C: PDB Molecule:eyes absent homolog 2;
PDBTitle: crystal structure of edeya2
41c2oyuP_
not modelled 20.5 17
PDB header:oxidoreductase
Chain: P: PDB Molecule:prostaglandin g/h synthase 1;
PDBTitle: indomethacin-(s)-alpha-ethyl-ethanolamide bound to cyclooxygenase-1
42d2bgxa1
not modelled 20.4 37
Fold:PGBD-like
Superfamily:PGBD-like
Family:Peptidoglycan binding domain, PGBD
43c5uqyB_
not modelled 20.1 20
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope glycoprotein gp2;
PDBTitle: crystal structure of marburg virus gp in complex with the human2 survivor antibody mr78
44c6d6rK_
not modelled 19.9 20
PDB header:hydrolase
Chain: K: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
45d2npta1
not modelled 19.3 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
46c6ajjA_
not modelled 19.1 26
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
47c1jpeA_
not modelled 18.6 20
PDB header:electron transport
Chain: A: PDB Molecule:dsbd-alpha;
PDBTitle: crystal structure of dsbd-alpha; the n-terminal domain of2 dsbd
48d1ig8a2
not modelled 18.5 24
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
49d1iuka_
not modelled 18.4 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
50c2of5A_
not modelled 18.3 21
PDB header:apoptosis
Chain: A: PDB Molecule:death domain-containing protein cradd;
PDBTitle: oligomeric death domain complex
51c4pv6E_
not modelled 18.1 19
PDB header:transferase
Chain: E: PDB Molecule:n-terminal acetyltransferase complex subunit [ard1];
PDBTitle: crystal structure analysis of ard1 from thermoplasma volcanium
52c4zwjC_
not modelled 17.5 26
PDB header:signaling protein
Chain: C: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
53d2qtva4
not modelled 17.3 27
Fold:Gelsolin-like
Superfamily:C-terminal, gelsolin-like domain of Sec23/24
Family:C-terminal, gelsolin-like domain of Sec23/24
54d1iuqa_
not modelled 17.2 12
Fold:Glycerol-3-phosphate (1)-acyltransferase
Superfamily:Glycerol-3-phosphate (1)-acyltransferase
Family:Glycerol-3-phosphate (1)-acyltransferase
55d1u83a_
not modelled 17.2 24
Fold:TIM beta/alpha-barrel
Superfamily:(2r)-phospho-3-sulfolactate synthase ComA
Family:(2r)-phospho-3-sulfolactate synthase ComA
56c1u83A_
not modelled 17.2 24
PDB header:lyase
Chain: A: PDB Molecule:phosphosulfolactate synthase;
PDBTitle: psl synthase from bacillus subtilis
57c4p9eA_
not modelled 16.8 27
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from the cyanophage s-tim5 in apo2 form
58c3al0C_
not modelled 16.7 16
PDB header:ligase/rna
Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c,linker,
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
59d1l6pa_
not modelled 16.6 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
Family:Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
60c3zddA_
not modelled 16.2 17
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
61c3j6vJ_
not modelled 15.3 30
PDB header:ribosome
Chain: J: PDB Molecule:28s ribosomal protein s10, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
62c2x7bA_
not modelled 15.2 17
PDB header:transferase
Chain: A: PDB Molecule:n-acetyltransferase sso0209;
PDBTitle: crystal structure of the n-terminal acetylase ard1 from2 sulfolobus solfataricus p2
63d1l0oc_
not modelled 14.9 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
64c1l0oC_
not modelled 14.9 20
PDB header:protein binding
Chain: C: PDB Molecule:sigma factor;
PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
65c2fb6A_
not modelled 14.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron
66c4bqeA_
not modelled 14.5 23
PDB header:transferase
Chain: A: PDB Molecule:alpha-glucan phosphorylase 2,4-glucan phosphorylase;
PDBTitle: arabidopsis thaliana cytosolic alpha-1,4-glucan phosphorylase (phs2)
67c2mxtA_
not modelled 14.5 13
PDB header:splicing
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein q;
PDBTitle: nmr structure of the acidic domain of syncrip (hnrnpq)
68d2bcqa2
not modelled 13.9 21
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
69d1o98a1
not modelled 13.8 18
Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
70c5y26A_
not modelled 13.6 27
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase epsilon subunit d;
PDBTitle: crystal structure of native dpb4-dpb3
71c4f0qC_
not modelled 13.5 18
PDB header:hydrolase
Chain: C: PDB Molecule:restriction endonuclease;
PDBTitle: mspji restriction endonuclease - p21 form
72c4f0qA_
not modelled 13.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease;
PDBTitle: mspji restriction endonuclease - p21 form
73c3d7iB_
not modelled 13.4 17
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
74c2a5wC_
not modelled 13.2 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma
PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus
75c2k0rA_
not modelled 13.1 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbd;
PDBTitle: solution structure of the c103s mutant of the n-terminal2 domain of dsbd from neisseria meningitidis
76c5kzoA_
not modelled 13.0 44
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
77c6c95B_
not modelled 12.7 12
PDB header:transferase
Chain: B: PDB Molecule:n-alpha-acetyltransferase 10;
PDBTitle: the human nata (naa10/naa15) amino-terminal acetyltransferase complex2 bound to hypk
78d1stza1
not modelled 12.7 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
79c3jsoA_
not modelled 12.4 31
PDB header:hydrolase/dna
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: classic protein with a new twist: crystal structure of a lexa2 repressor dna complex
80d1ygha_
not modelled 12.2 9
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
81d2icwg1
not modelled 11.9 23
Fold:Superantigen MAM
Superfamily:Superantigen MAM
Family:Superantigen MAM
82c2jpmA_
not modelled 11.5 15
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in tfe
83c3qbuD_
not modelled 11.4 13
PDB header:hydrolase
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of putative peptidoglycan deactelyase (hp0310) from2 helicobacter pylori
84c2n6vA_
not modelled 11.4 25
PDB header:unknown function
Chain: A: PDB Molecule:astexin3;
PDBTitle: solution study of astexin3
85c1yx3A_
not modelled 11.3 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dsrc;
PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
86c4giwB_
not modelled 11.3 24
PDB header:signaling protein
Chain: B: PDB Molecule:run and sh3 domain-containing protein 1;
PDBTitle: crystal structure of the run domain of human nesca
87c4im4F_
not modelled 11.1 13
PDB header:hydrolase
Chain: F: PDB Molecule:endoglucanase e;
PDBTitle: multifunctional cellulase, xylanase, mannanase
88c3wo6A_
not modelled 10.9 13
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein insertase yidc 2;
PDBTitle: crystal structure of yidc from bacillus halodurans (form i)
89d2iw0a1
not modelled 10.8 15
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
90c4e5gB_
not modelled 10.8 20
PDB header:viral protein, transcription
Chain: B: PDB Molecule:polymerase protein pa;
PDBTitle: crystal structure of avian influenza virus pan bound to compound 2
91c4oc8A_
not modelled 10.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease aspbhi;
PDBTitle: dna modification-dependent restriction endonuclease aspbhi
92c2jpkA_
not modelled 10.7 15
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in dpc
93c4griB_
not modelled 10.6 18
PDB header:ligase
Chain: B: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of a glutamyl-trna synthetase glurs from borrelia2 burgdorferi bound to glutamic acid and zinc
94c4hhsA_
not modelled 10.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-dioxygenase;
PDBTitle: crystal structure of fatty acid alpha-dioxygenase (arabidopsis2 thaliana)
95c5ccuA_
not modelled 10.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative secreted endoglycosylceramidase;
PDBTitle: crystal structure of endoglycoceramidase i from rhodococ-cus equi
96c3gqeA_
not modelled 10.5 13
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus
97c6mzdC_
not modelled 10.4 18
PDB header:transcription
Chain: C: PDB Molecule:transcription initiation factor tfiid subunit 3;
PDBTitle: human tfiid lobe a canonical
98c2m8fA_
not modelled 10.3 25
PDB header:unknown function
Chain: A: PDB Molecule:astexin3;
PDBTitle: structure of lasso peptide astexin3
99c1kbiB_
not modelled 10.3 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome b2;
PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme

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