Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3385c_(-)_3799815_3800123
DateFri Aug 9 18:20:05 BST 2019
Unique Job ID83ef391435da522a
SequenceMTPTACATVS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.654 Y:27.230 Z:39.039
Model (left) based on template c2odkD_
Top template information
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
Confidence and coverage
Confidence: 99.4% Coverage: 49%
50 residues ( 49% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2odkD_
99.4 20
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
2d2odka1
99.3 20
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
3c3hryA_
99.2 36
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
4c3hs2H_
99.1 39
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
5d2a6qb1
98.7 23
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3g5oA_
98.6 20
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7d2a6qa1
98.4 23
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3oeiB_
97.7 24
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
9c3d55A_
97.6 24
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
10c3k6qB_
86.7 11
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c1skoA_
62.3 20
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
12d3cpta1
56.3 26
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
13d2ns0a1
33.3 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
14d1ogda_
19.4 30
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
15c2wcvI_
18.9 19
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
16c3e7nB_
16.8 26
PDB header:transport protein
Chain: B: PDB Molecule:d-ribose high-affinity transport system;
PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2
17c1gk7A_
16.5 19
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 1a fragment (1a)
18c3p13B_
16.1 22
PDB header:isomerase
Chain: B: PDB Molecule:d-ribose pyranase;
PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose
19c4a34L_
14.9 19
PDB header:isomerase
Chain: L: PDB Molecule:rbsd/fucu transport protein family protein;
PDBTitle: crystal structure of the fucose mutarotase in complex with2 l-fucose from streptococcus pneumoniae
20c3mvkA_
14.7 19
PDB header:isomerase
Chain: A: PDB Molecule:protein fucu;
PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a
21c2wcuB_
not modelled 14.6 27
PDB header:isomerase
Chain: B: PDB Molecule:protein fucu homolog;
PDBTitle: crystal structure of mammalian fucu
22d2ob5a1
not modelled 12.8 31
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
23d1bifa2
not modelled 12.2 18
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
24c3s4rB_
not modelled 12.2 25
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment with a stabilizing2 mutation
25c2vm2C_
not modelled 11.6 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:thioredoxin h isoform 1.;
PDBTitle: crystal structure of barley thioredoxin h isoform 1 crystallized using2 peg as precipitant
26d1k6ma2
not modelled 11.5 18
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
27d1tipa_
not modelled 11.1 18
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
28d1y8xb1
not modelled 10.4 21
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Ubiquitin activating enzymes (UBA)
29c5zf2A_
not modelled 10.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin (h-type,trx-h);
PDBTitle: crystal structure of trxlp from edwardsiella tarda eib202
30c4heoA_
not modelled 10.1 35
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
31d2hq7a1
not modelled 9.5 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
32c2wtoB_
not modelled 9.3 33
PDB header:metal binding protein
Chain: B: PDB Molecule:orf131 protein;
PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34
33d1x6va1
not modelled 8.9 27
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
34c3jvoA_
not modelled 8.2 6
PDB header:viral protein
Chain: A: PDB Molecule:gp6;
PDBTitle: crystal structure of bacteriophage hk97 gp6
35c2qsiB_
not modelled 8.0 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
36c3iprC_
not modelled 7.7 19
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
37c2pptA_
not modelled 7.5 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
38c5lddA_
not modelled 7.5 20
PDB header:protein transport
Chain: A: PDB Molecule:mon1;
PDBTitle: crystal structure of the heterodimeric gef mon1-ccz1 in complex with2 ypt7
39c4ewvB_
not modelled 6.8 30
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
40c3v62F_
not modelled 6.3 50
PDB header:protein binding/dna binding protein
Chain: F: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
41c3v62C_
not modelled 6.3 50
PDB header:protein binding/dna binding protein
Chain: C: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
42c4jj0B_
not modelled 5.7 17
PDB header:electron transport
Chain: B: PDB Molecule:mamp;
PDBTitle: crystal structure of mamp
43c4x3iA_
not modelled 5.7 30
PDB header:signaling protein
Chain: A: PDB Molecule:activity-regulated cytoskeleton-associated protein;
PDBTitle: the crystal structure of arc n-lobe complexed with camk2a fragment

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